Wall clock time and date at job start Mon Mar 30 2020 03:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46897 * 2 1 4 4 N 1.46899 * 109.47037 * 176.25142 * 3 2 1 5 5 C 1.48067 * 111.00392 * 293.43931 * 4 3 2 6 6 H 1.09002 * 108.69628 * 46.94000 * 5 4 3 7 7 C 1.53003 * 108.78526 * 288.66879 * 5 4 3 8 8 C 1.50743 * 112.94297 * 167.77501 * 5 4 3 9 9 C 1.54514 * 108.93845 * 267.34597 * 8 5 4 10 10 N 1.40081 * 111.51468 * 76.02152 * 9 8 5 11 11 C 1.46901 * 111.00057 * 171.85660 * 10 9 8 12 12 C 1.47690 * 114.56251 * 298.54990 * 10 9 8 13 13 C 1.47758 * 110.99930 * 61.03464 * 4 3 2 14 14 H 1.08999 * 108.99052 * 154.42790 * 13 4 3 15 15 C 1.50702 * 108.92761 * 35.64365 * 13 4 3 16 16 H 1.08005 * 119.99500 * 355.74899 * 15 13 4 17 17 C 1.37869 * 120.00308 * 175.74646 * 15 13 4 18 18 N 1.31511 * 120.00331 * 179.97438 * 17 15 13 19 19 Si 1.86802 * 119.99833 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47252 * 89.99498 * 19 17 15 21 21 H 1.48504 * 109.47295 * 209.99520 * 19 17 15 22 22 H 1.48506 * 109.47012 * 329.99583 * 19 17 15 23 23 H 1.08997 * 109.47126 * 299.99541 * 1 2 3 24 24 H 1.08990 * 109.47239 * 60.00401 * 1 2 3 25 25 H 1.09002 * 109.46733 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47512 * 240.00111 * 2 1 3 27 27 H 1.08999 * 109.47400 * 119.99532 * 2 1 3 28 28 H 1.08993 * 109.47060 * 56.25352 * 3 2 1 29 29 H 1.08998 * 109.47268 * 296.25228 * 3 2 1 30 30 H 1.08997 * 109.46991 * 296.58115 * 7 5 4 31 31 H 1.09007 * 109.46847 * 176.58817 * 7 5 4 32 32 H 1.08996 * 109.47309 * 56.58660 * 7 5 4 33 33 H 1.08997 * 109.55918 * 27.17776 * 8 5 4 34 34 H 1.09002 * 109.55947 * 147.39556 * 8 5 4 35 35 H 1.08998 * 109.07356 * 196.54672 * 9 8 5 36 36 H 1.09005 * 109.07123 * 315.56969 * 9 8 5 37 37 H 1.08994 * 109.46716 * 63.95674 * 11 10 9 38 38 H 1.09003 * 109.46800 * 183.95935 * 11 10 9 39 39 H 1.08999 * 109.46749 * 303.95476 * 11 10 9 40 40 H 1.09002 * 109.73031 * 200.95174 * 12 10 9 41 41 H 1.08998 * 109.73673 * 321.64722 * 12 10 9 42 42 H 0.97006 * 119.99768 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5062 1.4436 0.0905 5 6 3.9573 0.9219 1.4008 6 1 3.4106 0.0043 1.6185 7 6 3.6332 1.9558 2.4809 8 6 5.4352 0.6272 1.4386 9 6 5.6609 -0.8543 1.0623 10 7 5.5213 -1.0613 -0.3161 11 6 5.9249 -2.4241 -0.6874 12 6 4.1831 -0.7409 -0.8526 13 6 4.1086 0.7498 -1.0666 14 1 5.1152 1.1359 -1.2270 15 6 3.2760 1.0284 -2.2914 16 1 2.3602 1.5945 -2.2044 17 6 3.6832 0.5609 -3.5228 18 7 2.9563 0.8036 -4.5916 19 14 5.2666 -0.4187 -3.6730 20 1 4.9732 -1.8639 -3.4983 21 1 5.8629 -0.1932 -5.0142 22 1 6.2227 0.0224 -2.6257 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6228 1.9753 0.8545 29 1 1.7325 1.9366 -0.9216 30 1 4.1970 2.8690 2.2906 31 1 3.9056 1.5577 3.4584 32 1 2.5661 2.1773 2.4633 33 1 5.9534 1.2679 0.7251 34 1 5.8188 0.8132 2.4418 35 1 6.6648 -1.1503 1.3669 36 1 4.9327 -1.4707 1.5895 37 1 5.2545 -3.1426 -0.2158 38 1 5.8736 -2.5358 -1.7705 39 1 6.9459 -2.6049 -0.3514 40 1 4.0337 -1.2567 -1.8011 41 1 3.4176 -1.0492 -0.1406 42 1 3.2427 0.4743 -5.4579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249993820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:39 Heat of formation + Delta-G solvation = 34.869426 kcal Electronic energy + Delta-G solvation = -19662.912775 eV Core-core repulsion = 17065.036663 eV Total energy + Delta-G solvation = -2597.876112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.70158 -36.22861 -33.97500 -32.64067 -31.17593 -29.05560 -28.05972 -25.57800 -25.11929 -23.85946 -21.59015 -21.15254 -19.94734 -18.22965 -17.13523 -15.60765 -15.24368 -14.80077 -14.65285 -14.20687 -14.07653 -13.33278 -12.99837 -12.82429 -12.52500 -12.21819 -12.08564 -11.80048 -11.65832 -11.62846 -11.43738 -11.20298 -10.83259 -10.68469 -10.53816 -10.50340 -10.32217 -10.06320 -9.85352 -9.48597 -9.37858 -8.71921 -8.53912 -7.69215 -7.07897 -6.02406 -4.03232 3.30549 3.46237 3.65567 4.47783 4.50063 4.77804 5.22903 5.25220 5.32160 5.49959 5.63193 5.67902 5.70087 5.77700 5.84069 5.89082 5.93379 6.05749 6.08257 6.12904 6.17423 6.22130 6.27075 6.39912 6.44566 6.49172 6.52384 6.60115 6.63567 6.69289 6.82312 7.07442 7.12649 7.28011 7.63150 7.72477 7.93702 8.10955 8.26836 8.72197 9.02679 9.58410 11.07318 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018383 B = 0.013484 C = 0.009644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.758520 B = 2076.073695 C = 2902.810029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.161 4.161 3 C 0.064 3.936 4 N -0.529 5.529 5 C 0.078 3.922 6 H 0.032 0.968 7 C -0.139 4.139 8 C -0.115 4.115 9 C 0.078 3.922 10 N -0.561 5.561 11 C 0.026 3.974 12 C 0.025 3.975 13 C 0.192 3.808 14 H 0.055 0.945 15 C -0.518 4.518 16 H 0.091 0.909 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.867 3.133 20 H -0.284 1.284 21 H -0.302 1.302 22 H -0.235 1.235 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.009 0.991 37 H 0.017 0.983 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -3.361 11.670 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C -0.064 4.064 4 N -0.253 5.253 5 C -0.031 4.031 6 H 0.049 0.951 7 C -0.197 4.197 8 C -0.153 4.153 9 C -0.052 4.052 10 N -0.285 5.285 11 C -0.122 4.122 12 C -0.102 4.102 13 C 0.084 3.916 14 H 0.073 0.927 15 C -0.556 4.556 16 H 0.109 0.891 17 C -0.131 4.131 18 N -0.537 5.537 19 Si 0.696 3.304 20 H -0.211 1.211 21 H -0.229 1.229 22 H -0.158 1.158 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.026 0.974 37 H 0.036 0.964 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.500 -2.585 11.276 11.836 hybrid contribution -0.027 -2.193 0.133 2.197 sum 2.472 -4.777 11.409 12.614 Atomic orbital electron populations 1.21672 0.96888 1.00442 1.01119 1.22406 0.95234 1.00521 1.01862 1.22204 0.87712 0.94610 1.01845 1.62184 1.06814 1.55785 1.00485 1.21352 0.94914 0.95764 0.91025 0.95059 1.21890 1.01463 0.99704 0.96663 1.21606 0.96418 0.96045 1.01266 1.20986 0.99485 0.96391 0.88290 1.59182 1.30208 1.24394 1.14737 1.22391 0.99483 0.88859 1.01470 1.23495 0.85800 1.01984 0.98942 1.19540 0.97146 0.86511 0.88400 0.92744 1.21377 1.09428 1.35203 0.89580 0.89138 1.24954 0.96491 0.95932 0.95713 1.69892 1.38463 1.46303 0.99050 0.87190 0.85876 0.79917 0.77412 1.21147 1.22947 1.15813 0.93913 0.92445 0.93938 0.89386 0.93959 0.93441 0.88595 0.92230 0.93550 0.92987 0.89764 0.91526 0.92042 0.97357 0.96414 0.91688 0.92171 0.90726 0.93872 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.16 -3.00 4.15 -26.73 -0.11 -3.11 16 3 C 0.06 1.25 4.69 -3.82 -0.02 1.23 16 4 N -0.53 -10.78 4.61 -221.16 -1.02 -11.80 16 5 C 0.08 1.33 1.77 -68.20 -0.12 1.21 16 6 H 0.03 0.56 4.53 -51.93 -0.24 0.33 16 7 C -0.14 -2.02 9.00 37.16 0.33 -1.69 16 8 C -0.12 -1.86 5.19 -27.07 -0.14 -2.00 16 9 C 0.08 1.28 4.95 -6.55 -0.03 1.25 16 10 N -0.56 -10.75 3.57 -248.02 -0.89 -11.64 16 11 C 0.03 0.44 9.28 60.07 0.56 1.00 16 12 C 0.02 0.53 2.55 -4.51 -0.01 0.52 16 13 C 0.19 4.42 1.39 -69.51 -0.10 4.32 16 14 H 0.05 1.38 6.02 -51.93 -0.31 1.07 16 15 C -0.52 -13.81 7.45 -34.44 -0.26 -14.07 16 16 H 0.09 2.58 5.25 -52.48 -0.28 2.30 16 17 C 0.07 1.99 5.33 -17.82 -0.10 1.90 16 18 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 19 Si 0.87 21.48 22.88 -169.99 -3.89 17.59 16 20 H -0.28 -6.83 6.09 56.52 0.34 -6.48 16 21 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 22 H -0.24 -5.70 6.14 56.52 0.35 -5.36 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 1.90 5.08 -51.93 -0.26 1.64 16 27 H 0.04 0.76 5.66 -51.93 -0.29 0.46 16 28 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 29 H 0.10 2.12 5.43 -51.93 -0.28 1.84 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.05 0.75 6.47 -51.93 -0.34 0.41 16 33 H 0.08 1.54 7.19 -51.93 -0.37 1.17 16 34 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 35 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 36 H 0.01 0.14 7.59 -51.93 -0.39 -0.26 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 1.20 5.69 -51.93 -0.30 0.90 16 39 H 0.06 0.87 7.98 -51.93 -0.41 0.46 16 40 H 0.07 1.76 4.16 -51.93 -0.22 1.54 16 41 H 0.04 0.90 3.89 -51.93 -0.20 0.70 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 284.01 15.07 4.28 4.28 Total: -1.00 -28.45 284.01 -7.18 -35.63 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.81 Total: 3.44 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 0.38 Total: -11.39 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -1.13 Total: -49.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -3.89 Total: 17.59 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.45 -7.18 -35.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249993820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.503 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds