Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46897 * 2 1 4 4 N 1.46899 * 109.47037 * 176.25142 * 3 2 1 5 5 C 1.48067 * 111.00392 * 293.43931 * 4 3 2 6 6 H 1.09002 * 108.69628 * 46.94000 * 5 4 3 7 7 C 1.53003 * 108.78526 * 288.66879 * 5 4 3 8 8 C 1.50743 * 112.94297 * 167.77501 * 5 4 3 9 9 C 1.54514 * 108.93845 * 267.34597 * 8 5 4 10 10 N 1.40081 * 111.51468 * 76.02152 * 9 8 5 11 11 C 1.46901 * 111.00057 * 171.85660 * 10 9 8 12 12 C 1.47690 * 114.56251 * 298.54990 * 10 9 8 13 13 C 1.47758 * 110.99930 * 61.03464 * 4 3 2 14 14 H 1.08999 * 108.99052 * 154.42790 * 13 4 3 15 15 C 1.50702 * 108.92761 * 35.64365 * 13 4 3 16 16 H 1.08005 * 119.99500 * 355.74899 * 15 13 4 17 17 C 1.37869 * 120.00308 * 175.74646 * 15 13 4 18 18 N 1.31511 * 120.00331 * 179.97438 * 17 15 13 19 19 Si 1.86802 * 119.99833 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47252 * 89.99498 * 19 17 15 21 21 H 1.48504 * 109.47295 * 209.99520 * 19 17 15 22 22 H 1.48506 * 109.47012 * 329.99583 * 19 17 15 23 23 H 1.08997 * 109.47126 * 299.99541 * 1 2 3 24 24 H 1.08990 * 109.47239 * 60.00401 * 1 2 3 25 25 H 1.09002 * 109.46733 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47512 * 240.00111 * 2 1 3 27 27 H 1.08999 * 109.47400 * 119.99532 * 2 1 3 28 28 H 1.08993 * 109.47060 * 56.25352 * 3 2 1 29 29 H 1.08998 * 109.47268 * 296.25228 * 3 2 1 30 30 H 1.08997 * 109.46991 * 296.58115 * 7 5 4 31 31 H 1.09007 * 109.46847 * 176.58817 * 7 5 4 32 32 H 1.08996 * 109.47309 * 56.58660 * 7 5 4 33 33 H 1.08997 * 109.55918 * 27.17776 * 8 5 4 34 34 H 1.09002 * 109.55947 * 147.39556 * 8 5 4 35 35 H 1.08998 * 109.07356 * 196.54672 * 9 8 5 36 36 H 1.09005 * 109.07123 * 315.56969 * 9 8 5 37 37 H 1.08994 * 109.46716 * 63.95674 * 11 10 9 38 38 H 1.09003 * 109.46800 * 183.95935 * 11 10 9 39 39 H 1.08999 * 109.46749 * 303.95476 * 11 10 9 40 40 H 1.09002 * 109.73031 * 200.95174 * 12 10 9 41 41 H 1.08998 * 109.73673 * 321.64722 * 12 10 9 42 42 H 0.97006 * 119.99768 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5062 1.4436 0.0905 5 6 3.9573 0.9219 1.4008 6 1 3.4106 0.0043 1.6185 7 6 3.6332 1.9558 2.4809 8 6 5.4352 0.6272 1.4386 9 6 5.6609 -0.8543 1.0623 10 7 5.5213 -1.0613 -0.3161 11 6 5.9249 -2.4241 -0.6874 12 6 4.1831 -0.7409 -0.8526 13 6 4.1086 0.7498 -1.0666 14 1 5.1152 1.1359 -1.2270 15 6 3.2760 1.0284 -2.2914 16 1 2.3602 1.5945 -2.2044 17 6 3.6832 0.5609 -3.5228 18 7 2.9563 0.8036 -4.5916 19 14 5.2666 -0.4187 -3.6730 20 1 4.9732 -1.8639 -3.4983 21 1 5.8629 -0.1932 -5.0142 22 1 6.2227 0.0224 -2.6257 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6228 1.9753 0.8545 29 1 1.7325 1.9366 -0.9216 30 1 4.1970 2.8690 2.2906 31 1 3.9056 1.5577 3.4584 32 1 2.5661 2.1773 2.4633 33 1 5.9534 1.2679 0.7251 34 1 5.8188 0.8132 2.4418 35 1 6.6648 -1.1503 1.3669 36 1 4.9327 -1.4707 1.5895 37 1 5.2545 -3.1426 -0.2158 38 1 5.8736 -2.5358 -1.7705 39 1 6.9459 -2.6049 -0.3514 40 1 4.0337 -1.2567 -1.8011 41 1 3.4176 -1.0492 -0.1406 42 1 3.2427 0.4743 -5.4579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249993820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = 14.030447 kcal Electronic energy + Delta-G solvation = -19663.816421 eV Core-core repulsion = 17065.036663 eV Total energy + Delta-G solvation = -2598.779758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23182 -37.70558 -35.56951 -34.39072 -32.93969 -30.47652 -29.50514 -27.41791 -26.53710 -25.27825 -23.26021 -22.60270 -21.46435 -19.82779 -19.02995 -17.26460 -16.80573 -16.35990 -16.11572 -15.90519 -15.64796 -14.88458 -14.63482 -14.20063 -13.99202 -13.74985 -13.62222 -13.25539 -13.19501 -13.11795 -12.92223 -12.58012 -12.40935 -12.27697 -12.09039 -11.97186 -11.85341 -11.71036 -11.40331 -11.25453 -10.96422 -10.69573 -10.65429 -9.14822 -8.66888 -8.20898 -6.23878 1.30527 1.41202 1.63833 2.39943 3.00640 3.19412 3.26661 3.96040 3.97628 4.12724 4.20942 4.28983 4.34514 4.43464 4.49306 4.53518 4.59838 4.62785 4.74275 4.77904 4.87687 4.88121 4.91042 4.95700 5.05372 5.07608 5.11768 5.17885 5.25646 5.35405 5.42055 5.47317 5.51848 5.59880 5.79566 6.13006 6.19482 6.53500 6.54296 6.87196 6.91060 7.41671 8.91389 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018383 B = 0.013484 C = 0.009644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.758520 B = 2076.073695 C = 2902.810029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.153 4.153 3 C 0.069 3.931 4 N -0.544 5.544 5 C 0.075 3.925 6 H 0.030 0.970 7 C -0.133 4.133 8 C -0.113 4.113 9 C 0.074 3.926 10 N -0.577 5.577 11 C 0.025 3.975 12 C 0.040 3.960 13 C 0.204 3.796 14 H 0.032 0.968 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.017 3.983 18 N -0.947 5.947 19 Si 0.927 3.073 20 H -0.273 1.273 21 H -0.312 1.312 22 H -0.226 1.226 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.016 0.984 37 H 0.030 0.970 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -4.428 14.848 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.192 4.192 3 C -0.058 4.058 4 N -0.267 5.267 5 C -0.033 4.033 6 H 0.048 0.952 7 C -0.191 4.191 8 C -0.151 4.151 9 C -0.055 4.055 10 N -0.301 5.301 11 C -0.123 4.123 12 C -0.088 4.088 13 C 0.096 3.904 14 H 0.050 0.950 15 C -0.547 4.547 16 H 0.081 0.919 17 C -0.180 4.180 18 N -0.588 5.588 19 Si 0.754 3.246 20 H -0.200 1.200 21 H -0.241 1.241 22 H -0.149 1.149 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.606 -3.659 14.492 15.376 hybrid contribution -0.417 -1.793 -0.774 1.998 sum 3.189 -5.452 13.718 15.102 Atomic orbital electron populations 1.21628 0.94986 1.01482 1.01557 1.22246 0.96942 0.99371 1.00602 1.22079 0.87531 0.95231 1.01003 1.62117 1.07181 1.56073 1.01362 1.21521 0.95705 0.96494 0.89551 0.95183 1.21849 1.01407 0.98812 0.96985 1.21652 0.95321 0.95552 1.02598 1.21121 1.01223 0.96550 0.86582 1.59123 1.28336 1.26016 1.16675 1.22439 1.01461 0.87889 1.00472 1.23059 0.87736 0.99964 0.98062 1.19197 0.95065 0.87980 0.88188 0.95005 1.21683 1.08572 1.33217 0.91218 0.91947 1.25662 0.99422 0.97336 0.95567 1.70032 1.40525 1.48623 0.99582 0.86255 0.82423 0.79214 0.76662 1.19961 1.24089 1.14882 0.91428 0.94033 0.92629 0.93006 0.92597 0.90920 0.92293 0.92572 0.90537 0.93074 0.92211 0.87992 0.89368 0.96579 0.95192 0.93589 0.89234 0.93348 0.93342 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.91 71.98 0.71 -3.59 16 2 C -0.15 -5.58 4.15 30.60 0.13 -5.45 16 3 C 0.07 2.69 4.69 86.30 0.40 3.10 16 4 N -0.54 -21.84 4.61 -853.61 -3.94 -25.78 16 5 C 0.07 2.36 1.77 43.96 0.08 2.43 16 6 H 0.03 0.97 4.53 -2.39 -0.01 0.96 16 7 C -0.13 -3.37 9.00 71.98 0.65 -2.72 16 8 C -0.11 -3.28 5.19 30.38 0.16 -3.12 16 9 C 0.07 2.15 4.95 88.05 0.44 2.59 16 10 N -0.58 -20.73 3.57 -938.60 -3.35 -24.08 16 11 C 0.02 0.77 9.28 127.69 1.19 1.95 16 12 C 0.04 1.66 2.55 85.43 0.22 1.88 16 13 C 0.20 9.47 1.39 43.28 0.06 9.53 16 14 H 0.03 1.64 6.02 -2.39 -0.01 1.62 16 15 C -0.51 -28.24 7.45 25.60 0.19 -28.05 16 16 H 0.06 3.78 5.25 -2.91 -0.02 3.76 16 17 C 0.02 1.00 5.33 84.65 0.45 1.45 16 18 N -0.95 -59.22 13.96 21.44 0.30 -58.92 16 19 Si 0.93 45.83 22.88 68.60 1.57 47.40 16 20 H -0.27 -12.87 6.09 99.48 0.61 -12.27 16 21 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 22 H -0.23 -10.73 6.14 99.48 0.61 -10.12 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 2.27 5.08 -2.39 -0.01 2.26 16 27 H 0.06 1.88 5.66 -2.39 -0.01 1.87 16 28 H 0.07 2.43 6.37 -2.39 -0.02 2.42 16 29 H 0.06 2.73 5.43 -2.39 -0.01 2.71 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.50 8.08 -2.38 -0.02 1.48 16 32 H 0.05 1.30 6.47 -2.39 -0.02 1.28 16 33 H 0.06 2.06 7.19 -2.39 -0.02 2.04 16 34 H 0.10 2.23 7.68 -2.39 -0.02 2.21 16 35 H 0.09 2.12 7.91 -2.39 -0.02 2.10 16 36 H 0.02 0.46 7.59 -2.38 -0.02 0.44 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 1.59 5.69 -2.39 -0.01 1.58 16 39 H 0.09 2.24 7.98 -2.39 -0.02 2.22 16 40 H 0.05 2.28 4.16 -2.39 -0.01 2.27 16 41 H 0.05 1.96 3.89 -2.39 -0.01 1.96 16 42 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -64.01 284.01 0.05 -63.97 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.80 Total: 17.40 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 4.67 Total: -19.98 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -6.99 Total: -108.78 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.57 Total: 47.40 kcal Total: -64.01 0.05 -63.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249993820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.997 kcal (2) G-P(sol) polarization free energy of solvation -64.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds