Wall clock time and date at job start Mon Mar 30 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47461 * 2 1 4 4 N 1.46892 * 109.47521 * 179.97438 * 3 2 1 5 5 C 1.48060 * 111.00267 * 66.90281 * 4 3 2 6 6 C 1.53693 * 112.47757 * 192.19704 * 5 4 3 7 7 H 1.09000 * 108.95755 * 79.22314 * 6 5 4 8 8 C 1.52996 * 108.88925 * 197.92417 * 6 5 4 9 9 C 1.50802 * 112.09379 * 318.55061 * 6 5 4 10 10 N 1.47905 * 108.49542 * 92.55095 * 9 6 5 11 11 C 1.46897 * 110.99873 * 153.77587 * 10 9 6 12 12 C 1.40012 * 114.07126 * 280.07275 * 10 9 6 13 13 C 1.44582 * 111.00027 * 299.21032 * 4 3 2 14 14 H 1.08999 * 109.57018 * 100.53867 * 13 4 3 15 15 C 1.50700 * 109.57195 * 340.15898 * 13 4 3 16 16 H 1.07993 * 119.99848 * 2.34063 * 15 13 4 17 17 C 1.37878 * 119.99463 * 182.34855 * 15 13 4 18 18 N 1.31506 * 120.00274 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99671 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47133 * 119.99774 * 19 17 15 22 22 H 1.48498 * 109.47253 * 239.99496 * 19 17 15 23 23 H 1.08997 * 109.47344 * 300.00111 * 1 2 3 24 24 H 1.08996 * 109.47193 * 60.00337 * 1 2 3 25 25 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47344 * 239.99889 * 2 1 3 27 27 H 1.09003 * 109.47104 * 120.00068 * 2 1 3 28 28 H 1.08997 * 109.46932 * 59.99636 * 3 2 1 29 29 H 1.09003 * 109.47018 * 300.00121 * 3 2 1 30 30 H 1.08996 * 108.88542 * 71.42106 * 5 4 3 31 31 H 1.09006 * 108.80093 * 312.91136 * 5 4 3 32 32 H 1.09004 * 109.47480 * 182.53861 * 8 6 5 33 33 H 1.09007 * 109.47344 * 302.53083 * 8 6 5 34 34 H 1.09002 * 109.47768 * 62.53526 * 8 6 5 35 35 H 1.09005 * 109.63202 * 332.85114 * 9 6 5 36 36 H 1.09000 * 109.79767 * 212.34974 * 9 6 5 37 37 H 1.08996 * 109.47382 * 60.00710 * 11 10 9 38 38 H 1.09001 * 109.47406 * 299.99922 * 11 10 9 39 39 H 1.09006 * 109.46893 * 180.02562 * 11 10 9 40 40 H 1.09001 * 108.96003 * 182.48230 * 12 10 9 41 41 H 1.09002 * 108.95648 * 301.13852 * 12 10 9 42 42 H 0.97005 * 119.99857 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0401 0.9001 -1.2705 6 6 5.5466 0.6041 -1.1991 7 1 5.6971 -0.3436 -0.6820 8 6 6.0962 0.4861 -2.6220 9 6 6.3032 1.6857 -0.4698 10 7 6.4006 1.3094 0.9573 11 6 7.5799 1.9216 1.5837 12 6 5.2432 1.5762 1.6985 13 6 4.0266 0.7840 1.1791 14 1 4.3329 -0.2309 0.9254 15 6 2.9601 0.7412 2.2430 16 1 1.9757 1.1345 2.0369 17 6 3.2414 0.2000 3.4795 18 7 4.4400 -0.2793 3.7303 19 14 1.9197 0.1475 4.7985 20 1 0.6677 0.7450 4.2687 21 1 1.6674 -1.2624 5.1908 22 1 2.3731 0.9176 5.9845 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.8601 1.6237 -2.0655 31 1 3.5102 -0.0226 -1.5074 32 1 7.1553 0.2315 -2.5826 33 1 5.5548 -0.2941 -3.1572 34 1 5.9701 1.4367 -3.1403 35 1 5.7705 2.6321 -0.5635 36 1 7.3034 1.7850 -0.8915 37 1 7.5069 3.0068 1.5127 38 1 8.4804 1.5837 1.0709 39 1 7.6277 1.6282 2.6325 40 1 5.4207 1.3098 2.7405 41 1 5.0230 2.6421 1.6398 42 1 4.6378 -0.6604 4.6002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249996654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:17 Heat of formation + Delta-G solvation = 22.656432 kcal Electronic energy + Delta-G solvation = -19250.881311 eV Core-core repulsion = 16652.475604 eV Total energy + Delta-G solvation = -2598.405707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.98229 -36.10440 -34.16316 -32.56740 -31.43490 -28.15189 -26.63080 -26.11520 -24.87821 -23.62305 -21.86534 -20.72253 -19.54103 -18.30161 -16.58179 -15.57971 -14.78459 -14.41786 -14.28689 -13.89682 -13.72426 -13.60755 -12.82948 -12.61707 -12.49820 -12.20947 -12.14761 -11.53555 -11.43960 -11.29274 -11.05727 -10.93104 -10.71723 -10.58867 -10.55346 -10.28934 -10.09056 -9.94157 -9.68757 -9.61640 -9.40000 -8.61217 -8.43366 -7.12453 -6.89942 -5.99255 -4.04756 3.27795 3.36871 3.39370 4.39952 4.92316 5.02595 5.30902 5.41351 5.60745 5.72699 5.77612 5.80762 6.00930 6.01723 6.06365 6.06648 6.14929 6.23135 6.25185 6.32481 6.37513 6.49031 6.49642 6.57230 6.62624 6.69601 6.70734 6.85766 7.02697 7.08026 7.11092 7.36135 7.46224 7.80248 7.90372 8.11450 8.21175 8.46406 8.51700 8.84262 9.04830 9.58735 11.04269 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.011184 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.848659 B = 2503.066932 C = 3656.791786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.169 4.169 3 C 0.075 3.925 4 N -0.552 5.552 5 C 0.068 3.932 6 C -0.091 4.091 7 H 0.079 0.921 8 C -0.140 4.140 9 C 0.077 3.923 10 N -0.548 5.548 11 C 0.038 3.962 12 C 0.078 3.922 13 C 0.229 3.771 14 H 0.015 0.985 15 C -0.526 4.526 16 H 0.080 0.920 17 C 0.062 3.938 18 N -0.878 5.878 19 Si 0.887 3.113 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.010 0.990 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.106 0.894 41 H -0.008 1.008 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 2.089 -7.800 8.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.207 4.207 3 C -0.053 4.053 4 N -0.275 5.275 5 C -0.060 4.060 6 C -0.110 4.110 7 H 0.097 0.903 8 C -0.198 4.198 9 C -0.051 4.051 10 N -0.271 5.271 11 C -0.110 4.110 12 C -0.051 4.051 13 C 0.122 3.878 14 H 0.033 0.967 15 C -0.564 4.564 16 H 0.098 0.902 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.715 3.285 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.010 0.990 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.074 1.996 -7.596 7.927 hybrid contribution -0.999 -0.069 0.721 1.234 sum 0.076 1.928 -6.875 7.140 Atomic orbital electron populations 1.21649 0.97370 1.00328 1.00613 1.22470 0.94680 1.00197 1.03368 1.22005 0.88074 0.94947 1.00234 1.61102 1.06318 1.57872 1.02241 1.22333 0.93828 0.97030 0.92783 1.20962 0.94343 1.00702 0.94988 0.90266 1.21825 1.00364 1.00988 0.96612 1.21715 0.97747 0.96688 0.88905 1.59315 1.05139 1.61119 1.01572 1.22214 0.93327 0.95591 0.99913 1.21254 0.88482 0.95480 0.99920 1.18923 0.91735 0.91593 0.85536 0.96744 1.21852 0.98040 1.39349 0.97157 0.90208 1.24999 0.95282 0.95423 0.98321 1.69948 1.19514 1.39657 1.22533 0.86613 0.82219 0.77621 0.82058 1.19699 1.21156 1.21107 0.93030 0.94142 0.93895 0.94018 0.87831 0.89611 0.94396 0.93090 0.95649 0.92924 0.93182 0.93179 0.94258 0.92823 0.97189 0.93087 0.91809 0.87665 0.98983 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.91 37.15 0.37 -1.96 16 2 C -0.17 -3.26 4.96 -26.74 -0.13 -3.40 16 3 C 0.08 1.51 4.77 -3.83 -0.02 1.49 16 4 N -0.55 -11.92 4.12 -227.65 -0.94 -12.86 16 5 C 0.07 1.28 4.74 -2.82 -0.01 1.27 16 6 C -0.09 -1.62 2.25 -91.36 -0.21 -1.83 16 7 H 0.08 1.63 7.23 -51.93 -0.38 1.26 16 8 C -0.14 -1.94 8.81 37.16 0.33 -1.61 16 9 C 0.08 1.43 4.85 -4.37 -0.02 1.41 16 10 N -0.55 -11.74 4.32 -248.08 -1.07 -12.82 16 11 C 0.04 0.70 9.45 60.06 0.57 1.27 16 12 C 0.08 1.91 4.27 -6.75 -0.03 1.88 16 13 C 0.23 5.64 1.40 -69.48 -0.10 5.55 16 14 H 0.01 0.41 6.93 -51.93 -0.36 0.05 16 15 C -0.53 -13.58 5.82 -34.44 -0.20 -13.78 16 16 H 0.08 2.02 4.27 -52.49 -0.22 1.79 16 17 C 0.06 1.65 5.20 -17.82 -0.09 1.56 16 18 N -0.88 -24.36 11.24 55.43 0.62 -23.74 16 19 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.78 6.34 -51.93 -0.33 0.45 16 27 H 0.10 2.36 5.51 -51.93 -0.29 2.08 16 28 H 0.09 1.85 5.77 -51.93 -0.30 1.55 16 29 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 30 H 0.05 0.89 7.97 -51.93 -0.41 0.47 16 31 H 0.03 0.48 6.02 -51.93 -0.31 0.17 16 32 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 36 H 0.05 0.88 7.39 -51.93 -0.38 0.50 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.06 1.21 7.89 -51.93 -0.41 0.80 16 40 H 0.11 2.87 5.36 -51.93 -0.28 2.59 16 41 H -0.01 -0.20 8.07 -51.93 -0.42 -0.62 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -26.97 304.71 -8.78 -35.75 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.42 Total: 1.56 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.45 Total: -8.16 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -1.39 Total: -49.41 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.97 -8.78 -35.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249996654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.405 kcal (2) G-P(sol) polarization free energy of solvation -26.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds