Wall clock time and date at job start Mon Mar 30 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47461 * 2 1 4 4 N 1.46892 * 109.47521 * 179.97438 * 3 2 1 5 5 C 1.48060 * 111.00267 * 66.90281 * 4 3 2 6 6 C 1.53693 * 112.47757 * 192.19704 * 5 4 3 7 7 H 1.09000 * 108.95755 * 79.22314 * 6 5 4 8 8 C 1.52996 * 108.88925 * 197.92417 * 6 5 4 9 9 C 1.50802 * 112.09379 * 318.55061 * 6 5 4 10 10 N 1.47905 * 108.49542 * 92.55095 * 9 6 5 11 11 C 1.46897 * 110.99873 * 153.77587 * 10 9 6 12 12 C 1.40012 * 114.07126 * 280.07275 * 10 9 6 13 13 C 1.44582 * 111.00027 * 299.21032 * 4 3 2 14 14 H 1.08999 * 109.57018 * 100.53867 * 13 4 3 15 15 C 1.50700 * 109.57195 * 340.15898 * 13 4 3 16 16 H 1.07993 * 119.99848 * 2.34063 * 15 13 4 17 17 C 1.37878 * 119.99463 * 182.34855 * 15 13 4 18 18 N 1.31506 * 120.00274 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99671 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47133 * 119.99774 * 19 17 15 22 22 H 1.48498 * 109.47253 * 239.99496 * 19 17 15 23 23 H 1.08997 * 109.47344 * 300.00111 * 1 2 3 24 24 H 1.08996 * 109.47193 * 60.00337 * 1 2 3 25 25 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47344 * 239.99889 * 2 1 3 27 27 H 1.09003 * 109.47104 * 120.00068 * 2 1 3 28 28 H 1.08997 * 109.46932 * 59.99636 * 3 2 1 29 29 H 1.09003 * 109.47018 * 300.00121 * 3 2 1 30 30 H 1.08996 * 108.88542 * 71.42106 * 5 4 3 31 31 H 1.09006 * 108.80093 * 312.91136 * 5 4 3 32 32 H 1.09004 * 109.47480 * 182.53861 * 8 6 5 33 33 H 1.09007 * 109.47344 * 302.53083 * 8 6 5 34 34 H 1.09002 * 109.47768 * 62.53526 * 8 6 5 35 35 H 1.09005 * 109.63202 * 332.85114 * 9 6 5 36 36 H 1.09000 * 109.79767 * 212.34974 * 9 6 5 37 37 H 1.08996 * 109.47382 * 60.00710 * 11 10 9 38 38 H 1.09001 * 109.47406 * 299.99922 * 11 10 9 39 39 H 1.09006 * 109.46893 * 180.02562 * 11 10 9 40 40 H 1.09001 * 108.96003 * 182.48230 * 12 10 9 41 41 H 1.09002 * 108.95648 * 301.13852 * 12 10 9 42 42 H 0.97005 * 119.99857 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0401 0.9001 -1.2705 6 6 5.5466 0.6041 -1.1991 7 1 5.6971 -0.3436 -0.6820 8 6 6.0962 0.4861 -2.6220 9 6 6.3032 1.6857 -0.4698 10 7 6.4006 1.3094 0.9573 11 6 7.5799 1.9216 1.5837 12 6 5.2432 1.5762 1.6985 13 6 4.0266 0.7840 1.1791 14 1 4.3329 -0.2309 0.9254 15 6 2.9601 0.7412 2.2430 16 1 1.9757 1.1345 2.0369 17 6 3.2414 0.2000 3.4795 18 7 4.4400 -0.2793 3.7303 19 14 1.9197 0.1475 4.7985 20 1 0.6677 0.7450 4.2687 21 1 1.6674 -1.2624 5.1908 22 1 2.3731 0.9176 5.9845 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.8601 1.6237 -2.0655 31 1 3.5102 -0.0226 -1.5074 32 1 7.1553 0.2315 -2.5826 33 1 5.5548 -0.2941 -3.1572 34 1 5.9701 1.4367 -3.1403 35 1 5.7705 2.6321 -0.5635 36 1 7.3034 1.7850 -0.8915 37 1 7.5069 3.0068 1.5127 38 1 8.4804 1.5837 1.0709 39 1 7.6277 1.6282 2.6325 40 1 5.4207 1.3098 2.7405 41 1 5.0230 2.6421 1.6398 42 1 4.6378 -0.6604 4.6002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249996654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:17 Heat of formation + Delta-G solvation = 5.409835 kcal Electronic energy + Delta-G solvation = -19251.629179 eV Core-core repulsion = 16652.475604 eV Total energy + Delta-G solvation = -2599.153576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66407 -37.74898 -35.76613 -34.37719 -33.06357 -29.93290 -28.15344 -27.64935 -26.56031 -25.27477 -23.50938 -22.34744 -21.16230 -20.01011 -18.48832 -17.33149 -16.41466 -16.16792 -16.06339 -15.54287 -15.28171 -15.20227 -14.50260 -14.09207 -13.97977 -13.77712 -13.52472 -13.10576 -12.99093 -12.87868 -12.79394 -12.45237 -12.41030 -12.26704 -12.13094 -11.84691 -11.71586 -11.53893 -11.37557 -11.32667 -11.08746 -10.52853 -10.46260 -8.83689 -8.65138 -8.03264 -6.13598 1.39859 1.43267 1.52729 2.44038 3.15788 3.43191 3.46618 4.01012 4.16719 4.24630 4.33895 4.41499 4.50999 4.60576 4.62866 4.68498 4.76745 4.83477 4.83618 4.87439 4.95580 4.98752 5.02741 5.05839 5.11619 5.19359 5.23381 5.30645 5.37425 5.42838 5.52977 5.58618 5.74014 5.81417 5.95238 6.19866 6.47846 6.65315 6.72364 7.01900 7.06468 7.53403 8.99966 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.011184 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.848659 B = 2503.066932 C = 3656.791786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.160 4.160 3 C 0.076 3.924 4 N -0.562 5.562 5 C 0.067 3.933 6 C -0.089 4.089 7 H 0.044 0.956 8 C -0.129 4.129 9 C 0.081 3.919 10 N -0.569 5.569 11 C 0.040 3.960 12 C 0.098 3.902 13 C 0.244 3.756 14 H -0.027 1.027 15 C -0.530 4.530 16 H 0.085 0.915 17 C 0.014 3.986 18 N -0.909 5.909 19 Si 0.945 3.055 20 H -0.263 1.263 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.073 0.927 41 H -0.026 1.026 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 2.777 -9.687 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.199 4.199 3 C -0.051 4.051 4 N -0.285 5.285 5 C -0.060 4.060 6 C -0.109 4.109 7 H 0.063 0.937 8 C -0.187 4.187 9 C -0.045 4.045 10 N -0.293 5.293 11 C -0.108 4.108 12 C -0.033 4.033 13 C 0.136 3.864 14 H -0.010 1.010 15 C -0.568 4.568 16 H 0.102 0.898 17 C -0.185 4.185 18 N -0.549 5.549 19 Si 0.772 3.228 20 H -0.187 1.187 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.101 0.899 37 H 0.038 0.962 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.091 0.909 41 H -0.008 1.008 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.620 2.692 -9.503 9.897 hybrid contribution -0.834 -0.285 1.249 1.528 sum -0.214 2.407 -8.254 8.601 Atomic orbital electron populations 1.21591 0.94797 1.01389 1.01547 1.22283 0.96925 0.99209 1.01506 1.21997 0.87215 0.95391 1.00530 1.61082 1.07410 1.57612 1.02420 1.22448 0.94445 0.97402 0.91744 1.20954 0.93986 0.98590 0.97344 0.93712 1.21741 1.00981 1.02378 0.93635 1.21778 0.99403 0.96253 0.87110 1.59263 1.04795 1.62091 1.03108 1.22238 0.93188 0.96048 0.99310 1.20872 0.89796 0.93884 0.98725 1.18591 0.91684 0.89553 0.86604 1.00960 1.22170 0.98579 1.38528 0.97524 0.89759 1.25695 0.97002 0.95453 1.00351 1.70094 1.21185 1.40775 1.22806 0.85688 0.80237 0.77351 0.79523 1.18678 1.21244 1.21135 0.93555 0.91692 0.92837 0.93613 0.91869 0.91505 0.91688 0.90701 0.95993 0.91664 0.92226 0.91389 0.95222 0.89874 0.96241 0.90164 0.93318 0.90939 1.00845 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.91 71.98 0.71 -3.47 16 2 C -0.16 -6.13 4.96 30.59 0.15 -5.98 16 3 C 0.08 3.00 4.77 86.31 0.41 3.41 16 4 N -0.56 -24.25 4.12 -874.15 -3.60 -27.85 16 5 C 0.07 2.44 4.74 86.31 0.41 2.84 16 6 C -0.09 -3.10 2.25 -11.28 -0.03 -3.12 16 7 H 0.04 1.86 7.23 -2.39 -0.02 1.85 16 8 C -0.13 -3.18 8.81 71.98 0.63 -2.55 16 9 C 0.08 2.92 4.85 85.40 0.41 3.34 16 10 N -0.57 -24.60 4.32 -938.79 -4.06 -28.65 16 11 C 0.04 1.45 9.45 127.69 1.21 2.66 16 12 C 0.10 4.93 4.27 87.95 0.38 5.31 16 13 C 0.24 12.40 1.40 45.01 0.06 12.46 16 14 H -0.03 -1.59 6.93 -2.39 -0.02 -1.61 16 15 C -0.53 -28.19 5.82 25.60 0.15 -28.04 16 16 H 0.08 4.34 4.27 -2.91 -0.01 4.32 16 17 C 0.01 0.78 5.20 84.66 0.44 1.22 16 18 N -0.91 -52.49 11.24 21.45 0.24 -52.25 16 19 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.05 1.68 6.34 -2.39 -0.02 1.67 16 27 H 0.06 2.95 5.51 -2.39 -0.01 2.93 16 28 H 0.07 2.87 5.77 -2.39 -0.01 2.85 16 29 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 30 H 0.07 2.38 7.97 -2.39 -0.02 2.36 16 31 H 0.02 0.81 6.02 -2.38 -0.01 0.80 16 32 H 0.06 1.46 8.09 -2.38 -0.02 1.44 16 33 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.03 1.13 7.57 -2.38 -0.02 1.11 16 36 H 0.08 2.48 7.39 -2.39 -0.02 2.46 16 37 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 39 H 0.05 1.88 7.89 -2.38 -0.02 1.86 16 40 H 0.07 4.14 5.36 -2.39 -0.01 4.13 16 41 H -0.03 -1.39 8.07 -2.39 -0.02 -1.41 16 42 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -60.42 304.71 0.52 -59.90 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.97 Total: 15.37 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 4.94 Total: -11.92 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -7.41 Total: -108.75 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -60.42 0.52 -59.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249996654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.309 kcal (2) G-P(sol) polarization free energy of solvation -60.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds