Wall clock time and date at job start Mon Mar 30 2020 03:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46825 * 2 1 4 4 N 1.46898 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.48107 * 110.99833 * 65.47574 * 4 3 2 6 6 C 1.46142 * 112.19531 * 156.48125 * 5 4 3 7 7 H 1.09001 * 108.99392 * 300.24046 * 6 5 4 8 8 C 1.52994 * 108.99386 * 181.48749 * 6 5 4 9 9 C 1.54254 * 111.90193 * 60.86499 * 6 5 4 10 10 N 1.44257 * 108.64137 * 281.39223 * 9 6 5 11 11 C 1.46891 * 111.00203 * 219.84900 * 10 9 6 12 12 C 1.48199 * 114.27246 * 93.39118 * 10 9 6 13 13 C 1.44262 * 111.00364 * 302.83541 * 4 3 2 14 14 H 1.08998 * 108.78355 * 96.39808 * 13 4 3 15 15 C 1.50698 * 108.86310 * 337.92363 * 13 4 3 16 16 H 1.07997 * 120.00213 * 351.02867 * 15 13 4 17 17 C 1.37881 * 119.99914 * 171.30250 * 15 13 4 18 18 N 1.31506 * 120.00158 * 179.97438 * 17 15 13 19 19 Si 1.86799 * 119.99704 * 359.97438 * 17 15 13 20 20 H 1.48500 * 109.47297 * 90.00025 * 19 17 15 21 21 H 1.48500 * 109.47282 * 210.00143 * 19 17 15 22 22 H 1.48507 * 109.47465 * 329.99909 * 19 17 15 23 23 H 1.09001 * 109.47159 * 300.00159 * 1 2 3 24 24 H 1.08995 * 109.47399 * 60.00349 * 1 2 3 25 25 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47520 * 240.00063 * 2 1 3 27 27 H 1.08999 * 109.46941 * 119.99483 * 2 1 3 28 28 H 1.09001 * 109.47382 * 59.99977 * 3 2 1 29 29 H 1.08999 * 109.46939 * 299.99484 * 3 2 1 30 30 H 1.09002 * 108.93661 * 35.77813 * 5 4 3 31 31 H 1.08997 * 108.93398 * 277.17545 * 5 4 3 32 32 H 1.08998 * 109.47455 * 297.60959 * 8 6 5 33 33 H 1.09000 * 109.47203 * 57.60569 * 8 6 5 34 34 H 1.08999 * 109.47529 * 177.60444 * 8 6 5 35 35 H 1.09000 * 109.60709 * 161.64998 * 9 6 5 36 36 H 1.09000 * 109.60828 * 41.13952 * 9 6 5 37 37 H 1.08996 * 109.47313 * 287.80358 * 11 10 9 38 38 H 1.09000 * 109.47173 * 47.79914 * 11 10 9 39 39 H 1.08999 * 109.47426 * 167.79876 * 11 10 9 40 40 H 1.09001 * 108.82278 * 197.28353 * 12 10 9 41 41 H 1.09002 * 108.73437 * 78.92704 * 12 10 9 42 42 H 0.97006 * 120.00145 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0402 0.8685 -1.2570 6 6 5.3965 1.3303 -1.5451 7 1 5.3896 2.4165 -1.6357 8 6 5.8573 0.7248 -2.8724 9 6 6.3898 0.9251 -0.4367 10 7 6.2334 1.8299 0.6759 11 6 7.5362 2.1783 1.2583 12 6 5.2949 1.3551 1.7199 13 6 4.0255 0.7125 1.1325 14 1 4.2588 -0.3045 0.8174 15 6 2.9660 0.6595 2.2029 16 1 2.0660 1.2477 2.1014 17 6 3.1482 -0.1356 3.3145 18 7 2.2239 -0.1815 4.2488 19 14 4.7081 -1.1476 3.4933 20 1 5.7383 -0.3480 4.2035 21 1 4.4135 -2.3779 4.2710 22 1 5.2125 -1.5217 2.1476 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.3864 1.1552 -2.0807 31 1 4.0467 -0.2184 -1.1747 32 1 5.8878 -0.3612 -2.7853 33 1 5.1602 1.0065 -3.6617 34 1 6.8520 1.0979 -3.1161 35 1 7.4089 0.9873 -0.8183 36 1 6.1797 -0.0939 -0.1119 37 1 7.9331 1.3201 1.8005 38 1 8.2272 2.4564 0.4625 39 1 7.4151 3.0170 1.9439 40 1 5.0047 2.2012 2.3430 41 1 5.8057 0.6200 2.3418 42 1 2.3519 -0.7412 5.0307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249996656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:20 Heat of formation + Delta-G solvation = 25.402947 kcal Electronic energy + Delta-G solvation = -19329.537449 eV Core-core repulsion = 16731.250840 eV Total energy + Delta-G solvation = -2598.286609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.26631 -36.17004 -34.44455 -32.48929 -31.66391 -28.90196 -26.79250 -26.24659 -24.95268 -23.66873 -21.76275 -21.02682 -19.62574 -18.61374 -16.80852 -15.92050 -15.07835 -14.64307 -14.27818 -14.00778 -13.88366 -13.38460 -13.16020 -13.03050 -12.60975 -12.49056 -12.06121 -11.83722 -11.64626 -11.47470 -11.30811 -11.01952 -10.65679 -10.60208 -10.55961 -10.36612 -10.20134 -10.14483 -10.01487 -9.73746 -9.46183 -8.72713 -8.59112 -7.49194 -7.12718 -6.14588 -4.11535 3.19677 3.29264 3.30451 4.31213 4.48865 4.88442 5.16554 5.31285 5.34756 5.63024 5.72037 5.81855 5.83510 5.84531 5.90932 5.93325 6.03219 6.10475 6.17999 6.20033 6.22972 6.27247 6.39087 6.40225 6.49045 6.57051 6.58389 6.66760 6.75076 6.83348 6.89687 7.20322 7.29676 7.42016 7.58101 7.72749 7.93018 8.04530 8.31030 8.63587 8.92196 9.45759 10.95493 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.012964 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.821703 B = 2159.300471 C = 3276.373176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.168 4.168 3 C 0.075 3.925 4 N -0.510 5.510 5 C 0.063 3.937 6 C -0.082 4.082 7 H 0.082 0.918 8 C -0.144 4.144 9 C 0.074 3.926 10 N -0.549 5.549 11 C 0.031 3.969 12 C 0.075 3.925 13 C 0.184 3.816 14 H 0.003 0.997 15 C -0.520 4.520 16 H 0.101 0.899 17 C 0.076 3.924 18 N -0.891 5.891 19 Si 0.869 3.131 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.269 1.269 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.013 0.987 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.013 0.987 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 1.176 -9.844 11.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.206 4.206 3 C -0.053 4.053 4 N -0.232 5.232 5 C -0.065 4.065 6 C -0.102 4.102 7 H 0.101 0.899 8 C -0.203 4.203 9 C -0.055 4.055 10 N -0.273 5.273 11 C -0.117 4.117 12 C -0.052 4.052 13 C 0.075 3.925 14 H 0.020 0.980 15 C -0.558 4.558 16 H 0.119 0.881 17 C -0.127 4.127 18 N -0.529 5.529 19 Si 0.698 3.302 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.195 1.195 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.128 0.872 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.030 0.970 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.413 1.994 -9.786 11.360 hybrid contribution 1.036 -2.282 0.611 2.579 sum 6.450 -0.288 -9.176 11.219 Atomic orbital electron populations 1.21606 0.97209 1.00261 1.00588 1.22519 0.95101 0.99807 1.03203 1.22109 0.87194 0.95360 1.00589 1.61562 1.06852 1.53774 1.00970 1.21023 0.95488 0.96481 0.93492 1.20131 0.94957 1.01911 0.93202 0.89931 1.21841 1.00709 1.00543 0.97171 1.21765 0.97626 0.94265 0.91832 1.60486 1.09795 1.46353 1.10684 1.22359 0.90783 0.99566 0.98989 1.23087 0.92184 0.98310 0.91644 1.19453 0.92393 0.90384 0.90283 0.97992 1.21584 1.04449 1.27028 1.02747 0.88100 1.24941 0.95711 0.96435 0.95623 1.69861 1.33651 1.39696 1.09675 0.87102 0.84644 0.80134 0.78297 1.20399 1.21970 1.19479 0.92608 0.94470 0.94080 0.94739 0.87240 0.89334 0.93966 0.92582 0.95878 0.93279 0.92841 0.92978 0.92509 0.95033 0.96891 0.92337 0.91847 0.90539 0.96957 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.17 -3.34 5.03 -26.73 -0.13 -3.47 16 3 C 0.08 1.51 4.74 -3.82 -0.02 1.49 16 4 N -0.51 -10.67 4.61 -232.52 -1.07 -11.74 16 5 C 0.06 1.14 3.28 -6.41 -0.02 1.12 16 6 C -0.08 -1.33 2.59 -93.22 -0.24 -1.57 16 7 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 8 C -0.14 -1.83 9.00 37.15 0.33 -1.50 16 9 C 0.07 1.29 4.77 -4.58 -0.02 1.27 16 10 N -0.55 -10.53 4.40 -242.56 -1.07 -11.60 16 11 C 0.03 0.51 9.52 60.06 0.57 1.08 16 12 C 0.07 1.67 4.50 -2.63 -0.01 1.66 16 13 C 0.18 4.28 0.71 -69.79 -0.05 4.23 16 14 H 0.00 0.06 5.06 -51.93 -0.26 -0.20 16 15 C -0.52 -13.56 5.72 -34.44 -0.20 -13.76 16 16 H 0.10 2.79 4.95 -52.49 -0.26 2.53 16 17 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 18 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 19 Si 0.87 21.42 24.55 -169.99 -4.17 17.24 16 20 H -0.28 -6.78 7.02 56.52 0.40 -6.38 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.27 -6.55 6.34 56.52 0.36 -6.19 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.65 7.09 -51.93 -0.37 0.28 16 27 H 0.11 2.60 5.29 -51.93 -0.27 2.33 16 28 H 0.09 1.96 5.76 -51.93 -0.30 1.66 16 29 H 0.04 0.76 7.92 -51.93 -0.41 0.35 16 30 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 31 H 0.02 0.44 6.91 -51.93 -0.36 0.08 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.06 0.85 7.22 -51.93 -0.37 0.48 16 36 H 0.03 0.61 6.96 -51.93 -0.36 0.25 16 37 H 0.01 0.21 8.03 -51.93 -0.42 -0.21 16 38 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.81 7.97 -51.93 -0.41 1.40 16 41 H 0.01 0.29 4.30 -51.93 -0.22 0.07 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -27.70 299.48 -7.93 -35.63 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.39 Total: 0.61 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 0.48 Total: -9.54 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -1.37 Total: -48.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.17 Total: 17.24 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.70 -7.93 -35.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249996656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.036 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds