Wall clock time and date at job start Mon Mar 30 2020 03:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46825 * 2 1 4 4 N 1.46898 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.48107 * 110.99833 * 65.47574 * 4 3 2 6 6 C 1.46142 * 112.19531 * 156.48125 * 5 4 3 7 7 H 1.09001 * 108.99392 * 300.24046 * 6 5 4 8 8 C 1.52994 * 108.99386 * 181.48749 * 6 5 4 9 9 C 1.54254 * 111.90193 * 60.86499 * 6 5 4 10 10 N 1.44257 * 108.64137 * 281.39223 * 9 6 5 11 11 C 1.46891 * 111.00203 * 219.84900 * 10 9 6 12 12 C 1.48199 * 114.27246 * 93.39118 * 10 9 6 13 13 C 1.44262 * 111.00364 * 302.83541 * 4 3 2 14 14 H 1.08998 * 108.78355 * 96.39808 * 13 4 3 15 15 C 1.50698 * 108.86310 * 337.92363 * 13 4 3 16 16 H 1.07997 * 120.00213 * 351.02867 * 15 13 4 17 17 C 1.37881 * 119.99914 * 171.30250 * 15 13 4 18 18 N 1.31506 * 120.00158 * 179.97438 * 17 15 13 19 19 Si 1.86799 * 119.99704 * 359.97438 * 17 15 13 20 20 H 1.48500 * 109.47297 * 90.00025 * 19 17 15 21 21 H 1.48500 * 109.47282 * 210.00143 * 19 17 15 22 22 H 1.48507 * 109.47465 * 329.99909 * 19 17 15 23 23 H 1.09001 * 109.47159 * 300.00159 * 1 2 3 24 24 H 1.08995 * 109.47399 * 60.00349 * 1 2 3 25 25 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47520 * 240.00063 * 2 1 3 27 27 H 1.08999 * 109.46941 * 119.99483 * 2 1 3 28 28 H 1.09001 * 109.47382 * 59.99977 * 3 2 1 29 29 H 1.08999 * 109.46939 * 299.99484 * 3 2 1 30 30 H 1.09002 * 108.93661 * 35.77813 * 5 4 3 31 31 H 1.08997 * 108.93398 * 277.17545 * 5 4 3 32 32 H 1.08998 * 109.47455 * 297.60959 * 8 6 5 33 33 H 1.09000 * 109.47203 * 57.60569 * 8 6 5 34 34 H 1.08999 * 109.47529 * 177.60444 * 8 6 5 35 35 H 1.09000 * 109.60709 * 161.64998 * 9 6 5 36 36 H 1.09000 * 109.60828 * 41.13952 * 9 6 5 37 37 H 1.08996 * 109.47313 * 287.80358 * 11 10 9 38 38 H 1.09000 * 109.47173 * 47.79914 * 11 10 9 39 39 H 1.08999 * 109.47426 * 167.79876 * 11 10 9 40 40 H 1.09001 * 108.82278 * 197.28353 * 12 10 9 41 41 H 1.09002 * 108.73437 * 78.92704 * 12 10 9 42 42 H 0.97006 * 120.00145 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0402 0.8685 -1.2570 6 6 5.3965 1.3303 -1.5451 7 1 5.3896 2.4165 -1.6357 8 6 5.8573 0.7248 -2.8724 9 6 6.3898 0.9251 -0.4367 10 7 6.2334 1.8299 0.6759 11 6 7.5362 2.1783 1.2583 12 6 5.2949 1.3551 1.7199 13 6 4.0255 0.7125 1.1325 14 1 4.2588 -0.3045 0.8174 15 6 2.9660 0.6595 2.2029 16 1 2.0660 1.2477 2.1014 17 6 3.1482 -0.1356 3.3145 18 7 2.2239 -0.1815 4.2488 19 14 4.7081 -1.1476 3.4933 20 1 5.7383 -0.3480 4.2035 21 1 4.4135 -2.3779 4.2710 22 1 5.2125 -1.5217 2.1476 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.3864 1.1552 -2.0807 31 1 4.0467 -0.2184 -1.1747 32 1 5.8878 -0.3612 -2.7853 33 1 5.1602 1.0065 -3.6617 34 1 6.8520 1.0979 -3.1161 35 1 7.4089 0.9873 -0.8183 36 1 6.1797 -0.0939 -0.1119 37 1 7.9331 1.3201 1.8005 38 1 8.2272 2.4564 0.4625 39 1 7.4151 3.0170 1.9439 40 1 5.0047 2.2012 2.3430 41 1 5.8057 0.6200 2.3418 42 1 2.3519 -0.7412 5.0307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249996656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:20 Heat of formation + Delta-G solvation = 5.695525 kcal Electronic energy + Delta-G solvation = -19330.392027 eV Core-core repulsion = 16731.250840 eV Total energy + Delta-G solvation = -2599.141187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85571 -37.71907 -35.92525 -34.38067 -33.34344 -30.59639 -28.13096 -27.75685 -26.58559 -25.26819 -23.37929 -22.59062 -21.13197 -20.32581 -18.71806 -17.53834 -16.74586 -16.20170 -15.98187 -15.69423 -15.47846 -14.90429 -14.69529 -14.56317 -14.35327 -13.82895 -13.47554 -13.23859 -13.21092 -12.96148 -12.77449 -12.63275 -12.35031 -12.27532 -12.10276 -11.94499 -11.77711 -11.72314 -11.60416 -11.34586 -11.13787 -10.69148 -10.64141 -9.03036 -8.80947 -8.28287 -6.26051 1.19677 1.24558 1.30447 2.24941 2.95761 3.07115 3.39267 3.99219 4.03894 4.23418 4.29145 4.36594 4.41304 4.45701 4.55521 4.58442 4.62679 4.71812 4.74381 4.75944 4.84839 4.90161 4.90782 4.97834 5.01186 5.06006 5.18731 5.28994 5.31190 5.34913 5.41894 5.51223 5.54848 5.65418 5.84355 6.03832 6.25307 6.46911 6.51438 6.80124 6.82640 7.33898 8.84588 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.012964 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.821703 B = 2159.300471 C = 3276.373176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.160 4.160 3 C 0.079 3.921 4 N -0.520 5.520 5 C 0.064 3.936 6 C -0.080 4.080 7 H 0.079 0.921 8 C -0.135 4.135 9 C 0.071 3.929 10 N -0.556 5.556 11 C 0.029 3.971 12 C 0.082 3.918 13 C 0.196 3.804 14 H -0.015 1.015 15 C -0.505 4.505 16 H 0.078 0.922 17 C 0.028 3.972 18 N -0.934 5.934 19 Si 0.917 3.083 20 H -0.273 1.273 21 H -0.293 1.293 22 H -0.265 1.265 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.011 0.989 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.000 1.000 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 1.486 -12.508 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.199 4.199 3 C -0.049 4.049 4 N -0.241 5.241 5 C -0.063 4.063 6 C -0.100 4.100 7 H 0.097 0.903 8 C -0.194 4.194 9 C -0.058 4.058 10 N -0.280 5.280 11 C -0.119 4.119 12 C -0.046 4.046 13 C 0.086 3.914 14 H 0.002 0.998 15 C -0.544 4.544 16 H 0.096 0.904 17 C -0.170 4.170 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.199 1.199 21 H -0.220 1.220 22 H -0.190 1.190 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.026 0.974 37 H 0.029 0.971 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.018 0.982 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.981 2.310 -12.475 14.481 hybrid contribution 0.519 -2.313 1.362 2.734 sum 7.499 -0.004 -11.114 13.407 Atomic orbital electron populations 1.21546 0.95363 1.01022 1.01132 1.22322 0.96765 0.99237 1.01540 1.22047 0.86982 0.95380 1.00499 1.61604 1.07290 1.53660 1.01594 1.21143 0.97172 0.95644 0.92349 1.20134 0.93469 1.01783 0.94604 0.90302 1.21767 1.02082 1.00300 0.95219 1.21922 0.99829 0.92538 0.91493 1.60469 1.10873 1.46397 1.10237 1.22476 0.89733 0.99485 1.00169 1.22753 0.92641 0.96935 0.92235 1.19211 0.91991 0.89926 0.90233 0.99754 1.21770 1.04334 1.25273 1.03009 0.90399 1.25504 0.98008 0.97809 0.95728 1.69973 1.35545 1.41393 1.10577 0.86301 0.81943 0.78881 0.78279 1.19879 1.22032 1.19034 0.94393 0.91512 0.93264 0.93383 0.91642 0.92257 0.91076 0.90533 0.97077 0.93308 0.91415 0.91044 0.89391 0.97391 0.97117 0.89091 0.91694 0.92646 0.98173 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.91 71.98 0.71 -3.84 16 2 C -0.16 -6.34 5.03 30.60 0.15 -6.18 16 3 C 0.08 3.12 4.74 86.31 0.41 3.53 16 4 N -0.52 -21.42 4.61 -889.55 -4.10 -25.52 16 5 C 0.06 2.18 3.28 83.96 0.28 2.45 16 6 C -0.08 -2.34 2.59 -12.48 -0.03 -2.38 16 7 H 0.08 2.41 8.12 -2.39 -0.02 2.39 16 8 C -0.14 -2.87 9.00 71.98 0.65 -2.22 16 9 C 0.07 2.28 4.77 87.22 0.42 2.69 16 10 N -0.56 -20.35 4.40 -921.32 -4.05 -24.40 16 11 C 0.03 0.86 9.52 127.69 1.22 2.08 16 12 C 0.08 3.68 4.50 86.36 0.39 4.07 16 13 C 0.20 9.22 0.71 44.97 0.03 9.25 16 14 H -0.01 -0.75 5.06 -2.39 -0.01 -0.76 16 15 C -0.51 -27.33 5.72 25.60 0.15 -27.18 16 16 H 0.08 4.54 4.95 -2.91 -0.01 4.52 16 17 C 0.03 1.59 5.45 84.66 0.46 2.05 16 18 N -0.93 -56.48 13.96 21.45 0.30 -56.18 16 19 Si 0.92 45.24 24.55 68.60 1.68 46.92 16 20 H -0.27 -13.11 7.02 99.48 0.70 -12.41 16 21 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.27 -12.76 6.34 99.48 0.63 -12.13 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.75 7.09 -2.39 -0.02 1.73 16 27 H 0.07 3.20 5.29 -2.39 -0.01 3.19 16 28 H 0.06 2.71 5.76 -2.39 -0.01 2.69 16 29 H 0.07 2.42 7.92 -2.39 -0.02 2.40 16 30 H 0.08 2.27 7.70 -2.39 -0.02 2.26 16 31 H 0.01 0.40 6.91 -2.39 -0.02 0.39 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 35 H 0.09 2.28 7.22 -2.39 -0.02 2.26 16 36 H 0.01 0.29 6.96 -2.39 -0.02 0.27 16 37 H 0.01 0.32 8.03 -2.39 -0.02 0.30 16 38 H 0.09 2.11 7.71 -2.39 -0.02 2.09 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 2.67 7.97 -2.39 -0.02 2.66 16 41 H 0.00 0.02 4.30 -2.39 -0.01 0.01 16 42 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -61.57 299.48 -0.46 -62.03 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.89 Total: 12.82 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.83 Total: -15.67 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -7.86 Total: -106.10 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.68 Total: 46.92 kcal Total: -61.57 -0.46 -62.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249996656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.728 kcal (2) G-P(sol) polarization free energy of solvation -61.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds