Wall clock time and date at job start Mon Mar 30 2020 04:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46975 * 2 1 4 4 N 1.46902 * 109.46881 * 175.46650 * 3 2 1 5 5 C 1.46901 * 110.99647 * 70.62029 * 4 3 2 6 6 H 1.09003 * 109.47071 * 171.01369 * 5 4 3 7 7 C 1.52993 * 109.47357 * 51.01225 * 5 4 3 8 8 C 1.50705 * 109.47017 * 291.01058 * 5 4 3 9 9 H 1.07991 * 119.99707 * 115.47407 * 8 5 4 10 10 C 1.37880 * 119.99944 * 295.47616 * 8 5 4 11 11 N 1.31507 * 119.99842 * 173.83052 * 10 8 5 12 12 Si 1.86805 * 119.99881 * 353.82897 * 10 8 5 13 13 H 1.48499 * 109.47235 * 86.55790 * 12 10 8 14 14 H 1.48498 * 109.46779 * 206.55832 * 12 10 8 15 15 H 1.48497 * 109.47138 * 326.55843 * 12 10 8 16 16 C 1.46903 * 110.99635 * 194.56858 * 4 3 2 17 17 H 1.08999 * 109.50765 * 296.12362 * 16 4 3 18 18 C 1.53120 * 109.53817 * 56.19265 * 16 4 3 19 19 C 1.53119 * 109.15952 * 177.57569 * 18 16 4 20 20 C 1.53039 * 109.30702 * 302.39870 * 19 18 16 21 21 N 1.46846 * 109.52502 * 59.16199 * 20 19 18 22 22 C 1.46844 * 111.19765 * 298.25888 * 21 20 19 23 23 H 1.08993 * 109.47315 * 59.99520 * 1 2 3 24 24 H 1.08997 * 109.46981 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46710 * 299.99423 * 1 2 3 26 26 H 1.09007 * 109.47057 * 240.00860 * 2 1 3 27 27 H 1.08990 * 109.47818 * 120.00485 * 2 1 3 28 28 H 1.09001 * 109.46688 * 55.47508 * 3 2 1 29 29 H 1.08993 * 109.47630 * 295.47285 * 3 2 1 30 30 H 1.09000 * 109.47191 * 293.57089 * 7 5 4 31 31 H 1.09001 * 109.47429 * 53.57048 * 7 5 4 32 32 H 1.09002 * 109.47225 * 173.57105 * 7 5 4 33 33 H 0.97004 * 120.00143 * 179.97438 * 11 10 8 34 34 H 1.09001 * 109.49460 * 57.68320 * 18 16 4 35 35 H 1.09006 * 109.54805 * 297.49366 * 18 16 4 36 36 H 1.09002 * 109.50444 * 182.44007 * 19 18 16 37 37 H 1.08995 * 109.50578 * 62.35961 * 19 18 16 38 38 H 1.08997 * 109.45731 * 179.17851 * 20 19 18 39 39 H 1.08998 * 109.45928 * 299.14539 * 20 19 18 40 40 H 1.00892 * 111.00065 * 174.16066 * 21 20 19 41 41 H 1.08997 * 109.46404 * 181.75661 * 22 21 20 42 42 H 1.09006 * 109.46069 * 301.73430 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4440 0.1095 5 6 4.1258 0.9554 -1.1290 6 1 5.2031 1.1152 -1.0830 7 6 3.5480 1.7165 -2.3238 8 6 3.8425 -0.5164 -1.2863 9 1 3.2418 -0.8652 -2.1131 10 6 4.3503 -1.4174 -0.3745 11 7 4.0050 -2.6846 -0.4403 12 14 5.5287 -0.8381 0.9541 13 1 4.7549 -0.3556 2.1261 14 1 6.4016 -1.9660 1.3676 15 1 6.3665 0.2679 0.4248 16 6 4.0055 2.7805 0.4576 17 1 3.7722 3.4776 -0.3472 18 6 3.3405 3.2550 1.7527 19 6 3.9126 4.6215 2.1400 20 6 5.4312 4.5094 2.2928 21 7 6.0195 4.0533 1.0270 22 6 5.5214 2.7218 0.6592 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8898 28 1 1.6119 1.9792 0.8467 29 1 1.7445 1.9325 -0.9277 30 1 2.4932 1.4667 -2.4382 31 1 3.6513 2.7886 -2.1562 32 1 4.0878 1.4366 -3.2285 33 1 4.3625 -3.3187 0.2009 34 1 3.5407 2.5374 2.5485 35 1 2.2646 3.3405 1.6002 36 1 3.4747 4.9450 3.0843 37 1 3.6778 5.3480 1.3621 38 1 5.8428 5.4842 2.5542 39 1 5.6650 3.7934 3.0807 40 1 7.0274 4.0624 1.0726 41 1 5.9985 2.3983 -0.2658 42 1 5.7547 2.0143 1.4549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250026071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:28 Heat of formation + Delta-G solvation = 7.708846 kcal Electronic energy + Delta-G solvation = -19324.758098 eV Core-core repulsion = 16725.704215 eV Total energy + Delta-G solvation = -2599.053883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.14280 -36.62690 -32.59053 -32.46743 -31.63782 -30.13585 -27.90901 -25.61844 -24.89476 -23.16114 -21.96570 -20.20010 -19.61023 -18.47232 -17.05614 -16.38609 -15.24977 -14.49028 -14.37232 -14.21009 -13.57888 -13.41635 -13.27326 -12.80878 -12.71541 -12.47911 -12.36962 -11.97844 -11.64034 -11.17357 -11.13684 -10.91264 -10.81658 -10.53215 -10.49075 -10.24658 -9.97966 -9.89651 -9.75107 -9.55497 -9.28912 -8.99626 -8.26081 -8.24127 -7.10920 -5.98931 -3.95601 3.48555 3.53442 3.61850 4.30543 4.62296 4.86819 5.08737 5.19072 5.23380 5.44684 5.56333 5.68043 5.82972 5.92030 5.95784 6.00335 6.06320 6.10754 6.18083 6.20168 6.28776 6.33830 6.37853 6.39936 6.44193 6.53934 6.54670 6.67261 6.81197 6.86942 6.96125 7.14254 7.28162 7.40442 7.53478 7.72605 7.89598 8.15814 8.36976 8.63438 8.98839 9.66707 11.10595 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.011115 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.566529 B = 2518.434570 C = 3093.184179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.070 3.930 4 N -0.529 5.529 5 C 0.166 3.834 6 H 0.045 0.955 7 C -0.165 4.165 8 C -0.499 4.499 9 H 0.073 0.927 10 C 0.088 3.912 11 N -0.897 5.897 12 Si 0.904 3.096 13 H -0.273 1.273 14 H -0.314 1.314 15 H -0.270 1.270 16 C 0.083 3.917 17 H 0.040 0.960 18 C -0.118 4.118 19 C -0.115 4.115 20 C 0.058 3.942 21 N -0.692 5.692 22 C 0.060 3.940 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.034 0.966 26 H 0.117 0.883 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.025 0.975 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.339 0.661 41 H 0.080 0.920 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 11.971 4.183 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.058 4.058 4 N -0.255 5.255 5 C 0.061 3.939 6 H 0.063 0.937 7 C -0.224 4.224 8 C -0.537 4.537 9 H 0.091 0.909 10 C -0.116 4.116 11 N -0.535 5.535 12 Si 0.735 3.265 13 H -0.199 1.199 14 H -0.243 1.243 15 H -0.196 1.196 16 C -0.026 4.026 17 H 0.058 0.942 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.072 4.072 21 N -0.323 5.323 22 C -0.068 4.068 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.135 0.865 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.156 0.844 41 H 0.098 0.902 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.555 11.810 4.250 12.563 hybrid contribution 0.825 0.171 0.871 1.212 sum 0.269 11.980 5.121 13.032 Atomic orbital electron populations 1.21834 0.98848 1.00373 0.99602 1.21992 0.91448 0.96355 1.06467 1.21965 0.87972 0.97785 0.98066 1.62756 1.05782 1.19828 1.37105 1.19922 0.94822 0.95514 0.83688 0.93706 1.22272 1.01450 0.98013 1.00624 1.20711 1.33310 0.87987 1.11717 0.90870 1.24865 0.95722 0.94308 0.96721 1.69951 1.43850 1.02780 1.36896 0.86466 0.80515 0.76447 0.83073 1.19904 1.24252 1.19553 1.21516 0.93325 0.91944 0.95830 0.94187 1.21745 0.99749 0.95898 0.98196 1.21567 0.94648 0.98050 1.01029 1.21901 0.95716 0.99212 0.90362 1.60269 1.11406 1.27970 1.32639 1.22208 0.96003 0.87892 1.00740 0.94090 0.93486 0.94644 0.86540 0.92532 0.93391 0.95675 0.92975 0.95194 0.93335 0.92922 0.91817 0.91690 0.91994 0.91524 0.91361 0.95519 0.84380 0.90211 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.91 37.16 0.37 -2.26 16 2 C -0.13 -2.68 4.95 -26.73 -0.13 -2.82 16 3 C 0.07 1.38 4.44 -3.82 -0.02 1.36 16 4 N -0.53 -11.12 2.72 -220.00 -0.60 -11.71 16 5 C 0.17 3.74 1.49 -68.87 -0.10 3.64 16 6 H 0.05 1.05 4.34 -51.93 -0.23 0.83 16 7 C -0.16 -3.31 8.21 37.15 0.30 -3.00 16 8 C -0.50 -13.12 5.66 -34.44 -0.19 -13.32 16 9 H 0.07 2.10 7.46 -52.49 -0.39 1.71 16 10 C 0.09 2.42 5.16 -17.82 -0.09 2.33 16 11 N -0.90 -26.47 13.96 55.43 0.77 -25.69 16 12 Si 0.90 22.61 24.59 -169.99 -4.18 18.42 16 13 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 15 H -0.27 -6.36 5.10 56.52 0.29 -6.07 16 16 C 0.08 1.52 1.93 -67.63 -0.13 1.39 16 17 H 0.04 0.76 6.64 -51.93 -0.34 0.41 16 18 C -0.12 -1.91 4.90 -26.61 -0.13 -2.04 16 19 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 20 C 0.06 0.76 6.55 -3.83 -0.03 0.73 16 21 N -0.69 -10.28 6.85 -113.82 -0.78 -11.06 16 22 C 0.06 1.09 4.37 -3.83 -0.02 1.08 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.12 2.87 4.73 -51.92 -0.25 2.63 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.05 0.88 5.57 -51.93 -0.29 0.59 16 29 H 0.03 0.49 5.71 -51.93 -0.30 0.19 16 30 H 0.05 1.05 6.49 -51.93 -0.34 0.71 16 31 H 0.03 0.55 6.60 -51.93 -0.34 0.21 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.34 4.36 8.90 -39.30 -0.35 4.01 16 41 H 0.08 1.54 5.97 -51.93 -0.31 1.23 16 42 H 0.04 0.71 6.30 -51.93 -0.33 0.38 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -27.96 295.74 -7.92 -35.88 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.26 Total: 4.30 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.33 Total: -14.60 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.60 Total: -48.47 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.18 Total: 18.42 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.96 -7.92 -35.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250026071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.586 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds