Wall clock time and date at job start Mon Mar 30 2020 04:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46975 * 2 1 4 4 N 1.46902 * 109.46881 * 175.46650 * 3 2 1 5 5 C 1.46901 * 110.99647 * 70.62029 * 4 3 2 6 6 H 1.09003 * 109.47071 * 171.01369 * 5 4 3 7 7 C 1.52993 * 109.47357 * 51.01225 * 5 4 3 8 8 C 1.50705 * 109.47017 * 291.01058 * 5 4 3 9 9 H 1.07991 * 119.99707 * 115.47407 * 8 5 4 10 10 C 1.37880 * 119.99944 * 295.47616 * 8 5 4 11 11 N 1.31507 * 119.99842 * 173.83052 * 10 8 5 12 12 Si 1.86805 * 119.99881 * 353.82897 * 10 8 5 13 13 H 1.48499 * 109.47235 * 86.55790 * 12 10 8 14 14 H 1.48498 * 109.46779 * 206.55832 * 12 10 8 15 15 H 1.48497 * 109.47138 * 326.55843 * 12 10 8 16 16 C 1.46903 * 110.99635 * 194.56858 * 4 3 2 17 17 H 1.08999 * 109.50765 * 296.12362 * 16 4 3 18 18 C 1.53120 * 109.53817 * 56.19265 * 16 4 3 19 19 C 1.53119 * 109.15952 * 177.57569 * 18 16 4 20 20 C 1.53039 * 109.30702 * 302.39870 * 19 18 16 21 21 N 1.46846 * 109.52502 * 59.16199 * 20 19 18 22 22 C 1.46844 * 111.19765 * 298.25888 * 21 20 19 23 23 H 1.08993 * 109.47315 * 59.99520 * 1 2 3 24 24 H 1.08997 * 109.46981 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46710 * 299.99423 * 1 2 3 26 26 H 1.09007 * 109.47057 * 240.00860 * 2 1 3 27 27 H 1.08990 * 109.47818 * 120.00485 * 2 1 3 28 28 H 1.09001 * 109.46688 * 55.47508 * 3 2 1 29 29 H 1.08993 * 109.47630 * 295.47285 * 3 2 1 30 30 H 1.09000 * 109.47191 * 293.57089 * 7 5 4 31 31 H 1.09001 * 109.47429 * 53.57048 * 7 5 4 32 32 H 1.09002 * 109.47225 * 173.57105 * 7 5 4 33 33 H 0.97004 * 120.00143 * 179.97438 * 11 10 8 34 34 H 1.09001 * 109.49460 * 57.68320 * 18 16 4 35 35 H 1.09006 * 109.54805 * 297.49366 * 18 16 4 36 36 H 1.09002 * 109.50444 * 182.44007 * 19 18 16 37 37 H 1.08995 * 109.50578 * 62.35961 * 19 18 16 38 38 H 1.08997 * 109.45731 * 179.17851 * 20 19 18 39 39 H 1.08998 * 109.45928 * 299.14539 * 20 19 18 40 40 H 1.00892 * 111.00065 * 174.16066 * 21 20 19 41 41 H 1.08997 * 109.46404 * 181.75661 * 22 21 20 42 42 H 1.09006 * 109.46069 * 301.73430 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4440 0.1095 5 6 4.1258 0.9554 -1.1290 6 1 5.2031 1.1152 -1.0830 7 6 3.5480 1.7165 -2.3238 8 6 3.8425 -0.5164 -1.2863 9 1 3.2418 -0.8652 -2.1131 10 6 4.3503 -1.4174 -0.3745 11 7 4.0050 -2.6846 -0.4403 12 14 5.5287 -0.8381 0.9541 13 1 4.7549 -0.3556 2.1261 14 1 6.4016 -1.9660 1.3676 15 1 6.3665 0.2679 0.4248 16 6 4.0055 2.7805 0.4576 17 1 3.7722 3.4776 -0.3472 18 6 3.3405 3.2550 1.7527 19 6 3.9126 4.6215 2.1400 20 6 5.4312 4.5094 2.2928 21 7 6.0195 4.0533 1.0270 22 6 5.5214 2.7218 0.6592 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8898 28 1 1.6119 1.9792 0.8467 29 1 1.7445 1.9325 -0.9277 30 1 2.4932 1.4667 -2.4382 31 1 3.6513 2.7886 -2.1562 32 1 4.0878 1.4366 -3.2285 33 1 4.3625 -3.3187 0.2009 34 1 3.5407 2.5374 2.5485 35 1 2.2646 3.3405 1.6002 36 1 3.4747 4.9450 3.0843 37 1 3.6778 5.3480 1.3621 38 1 5.8428 5.4842 2.5542 39 1 5.6650 3.7934 3.0807 40 1 7.0274 4.0624 1.0726 41 1 5.9985 2.3983 -0.2658 42 1 5.7547 2.0143 1.4549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250026071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:28 Heat of formation + Delta-G solvation = -11.811394 kcal Electronic energy + Delta-G solvation = -19325.604559 eV Core-core repulsion = 16725.704215 eV Total energy + Delta-G solvation = -2599.900344 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.61519 -38.06757 -34.52074 -34.06690 -33.04518 -31.64581 -29.41193 -27.52806 -26.40199 -24.51354 -23.34501 -21.87847 -21.04110 -20.07889 -18.97603 -17.82525 -16.82667 -16.22781 -15.95486 -15.46305 -15.16019 -14.90966 -14.73657 -14.49787 -14.23339 -14.08308 -13.70238 -13.45626 -13.31218 -12.81694 -12.73127 -12.52836 -12.35847 -12.15679 -11.89355 -11.79865 -11.70515 -11.54848 -11.45298 -11.06024 -11.04792 -10.91139 -10.33840 -9.45293 -8.75876 -8.15418 -6.11868 1.42537 1.50292 1.56206 2.52651 2.92871 3.28987 3.62702 3.83515 3.97447 4.09159 4.26371 4.37326 4.43883 4.47751 4.57102 4.59277 4.68928 4.72867 4.75386 4.77225 4.81378 4.87342 4.94721 4.97759 5.04105 5.06042 5.16423 5.24365 5.27868 5.37448 5.46762 5.47525 5.64979 5.75568 5.96991 6.08062 6.23039 6.45663 6.58969 6.76132 6.91834 7.51746 8.97075 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.011115 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.566529 B = 2518.434570 C = 3093.184179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.074 3.926 4 N -0.546 5.546 5 C 0.169 3.831 6 H 0.040 0.960 7 C -0.155 4.155 8 C -0.481 4.481 9 H 0.039 0.961 10 C 0.042 3.958 11 N -0.943 5.943 12 Si 0.953 3.047 13 H -0.280 1.280 14 H -0.324 1.324 15 H -0.249 1.249 16 C 0.084 3.916 17 H 0.043 0.957 18 C -0.116 4.116 19 C -0.109 4.109 20 C 0.054 3.946 21 N -0.689 5.689 22 C 0.065 3.935 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.258 0.742 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.021 0.979 40 H 0.351 0.649 41 H 0.064 0.936 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 15.229 5.057 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C -0.054 4.054 4 N -0.271 5.271 5 C 0.063 3.937 6 H 0.058 0.942 7 C -0.214 4.214 8 C -0.520 4.520 9 H 0.057 0.943 10 C -0.157 4.157 11 N -0.583 5.583 12 Si 0.784 3.216 13 H -0.207 1.207 14 H -0.254 1.254 15 H -0.173 1.173 16 C -0.025 4.025 17 H 0.061 0.939 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.075 4.075 21 N -0.321 5.321 22 C -0.064 4.064 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.040 0.960 40 H 0.169 0.831 41 H 0.083 0.917 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -0.724 15.106 5.117 15.965 hybrid contribution 0.836 -0.803 0.563 1.289 sum 0.112 14.303 5.680 15.390 Atomic orbital electron populations 1.21724 0.95755 1.00837 1.01474 1.21758 0.94246 0.96909 1.02768 1.21957 0.87331 0.96658 0.99416 1.62477 1.06534 1.22156 1.35979 1.19742 0.94872 0.93421 0.85699 0.94202 1.22141 1.00970 0.98843 0.99467 1.20863 1.31037 0.90271 1.09795 0.94297 1.25428 0.97330 0.94266 0.98663 1.70069 1.45982 1.03989 1.38290 0.85689 0.79043 0.76096 0.80809 1.20658 1.25419 1.17310 1.21576 0.93707 0.90114 0.97075 0.93923 1.21729 1.00205 0.97192 0.96215 1.21565 0.94612 0.96104 1.02435 1.22043 0.95794 1.00450 0.89223 1.60263 1.12451 1.25527 1.33838 1.22024 0.95842 0.89247 0.99330 0.92479 0.93857 0.92374 0.90390 0.95876 0.91176 0.94756 0.93314 0.93112 0.93217 0.93341 0.93545 0.90910 0.89527 0.90982 0.88427 0.96046 0.83056 0.91725 0.96766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.91 71.98 0.71 -4.05 16 2 C -0.12 -5.12 4.95 30.60 0.15 -4.97 16 3 C 0.07 2.80 4.44 86.30 0.38 3.18 16 4 N -0.55 -22.32 2.72 -849.93 -2.31 -24.63 16 5 C 0.17 7.54 1.49 44.17 0.07 7.60 16 6 H 0.04 1.85 4.34 -2.39 -0.01 1.84 16 7 C -0.16 -6.02 8.21 71.98 0.59 -5.43 16 8 C -0.48 -25.99 5.66 25.60 0.14 -25.84 16 9 H 0.04 2.34 7.46 -2.91 -0.02 2.31 16 10 C 0.04 2.39 5.16 84.66 0.44 2.82 16 11 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 12 Si 0.95 47.68 24.59 68.60 1.69 49.37 16 13 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.32 -16.69 7.11 99.48 0.71 -15.98 16 15 H -0.25 -11.42 5.10 99.48 0.51 -10.91 16 16 C 0.08 2.88 1.93 44.97 0.09 2.97 16 17 H 0.04 1.47 6.64 -2.39 -0.02 1.45 16 18 C -0.12 -3.38 4.90 30.67 0.15 -3.23 16 19 C -0.11 -2.45 6.09 30.65 0.19 -2.27 16 20 C 0.05 1.21 6.55 86.33 0.57 1.78 16 21 N -0.69 -18.32 6.85 -514.00 -3.52 -21.84 16 22 C 0.07 2.23 4.37 86.33 0.38 2.61 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 26 H 0.08 3.97 4.73 -2.38 -0.01 3.96 16 27 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 2.37 5.57 -2.39 -0.01 2.35 16 29 H 0.03 1.25 5.71 -2.39 -0.01 1.24 16 30 H 0.05 1.90 6.49 -2.39 -0.02 1.89 16 31 H 0.05 1.75 6.60 -2.39 -0.02 1.73 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 2.00 6.20 -2.38 -0.01 1.98 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.35 7.97 8.90 -89.70 -0.80 7.18 16 41 H 0.06 2.38 5.97 -2.39 -0.01 2.37 16 42 H 0.01 0.54 6.30 -2.38 -0.02 0.53 16 Total: -1.00 -62.10 295.74 0.01 -62.10 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.00 Total: 17.56 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 3.85 Total: -24.83 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -5.53 Total: -104.20 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.69 Total: 49.37 kcal Total: -62.10 0.01 -62.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250026071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.284 kcal (2) G-P(sol) polarization free energy of solvation -62.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds