Wall clock time and date at job start Mon Mar 30 2020 03:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46822 * 2 1 4 4 N 1.46901 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.46956 * 111.00163 * 313.80140 * 4 3 2 6 6 C 1.53047 * 109.36402 * 176.80533 * 5 4 3 7 7 C 1.53003 * 109.48960 * 178.36800 * 6 5 4 8 8 C 1.52999 * 109.49144 * 298.43655 * 6 5 4 9 9 N 1.46957 * 109.36434 * 58.40397 * 6 5 4 10 10 C 1.46895 * 111.00388 * 176.80978 * 9 6 5 11 11 C 1.46965 * 110.89914 * 300.69018 * 9 6 5 12 12 C 1.46956 * 111.00162 * 189.99707 * 4 3 2 13 13 H 1.09003 * 109.48596 * 63.20522 * 12 4 3 14 14 C 1.50697 * 109.48802 * 303.16282 * 12 4 3 15 15 H 1.07991 * 120.00449 * 359.76396 * 14 12 4 16 16 C 1.37885 * 119.99686 * 180.02562 * 14 12 4 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 12 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 H 1.09003 * 109.46875 * 60.00179 * 1 2 3 23 23 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47364 * 300.00262 * 1 2 3 25 25 H 1.08994 * 109.47583 * 240.00196 * 2 1 3 26 26 H 1.08999 * 109.47085 * 119.99347 * 2 1 3 27 27 H 1.09003 * 109.46683 * 59.99545 * 3 2 1 28 28 H 1.08993 * 109.47433 * 299.99528 * 3 2 1 29 29 H 1.08990 * 109.49170 * 296.77877 * 5 4 3 30 30 H 1.09003 * 109.48722 * 56.82461 * 5 4 3 31 31 H 1.08998 * 109.46584 * 60.00603 * 7 6 5 32 32 H 1.09004 * 109.46564 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47210 * 300.00149 * 7 6 5 34 34 H 1.09004 * 109.47457 * 60.00236 * 8 6 5 35 35 H 1.09009 * 109.47099 * 179.97438 * 8 6 5 36 36 H 1.08997 * 109.47382 * 299.99740 * 8 6 5 37 37 H 1.09000 * 109.47088 * 59.99995 * 10 9 6 38 38 H 1.09007 * 109.47448 * 179.97438 * 10 9 6 39 39 H 1.08996 * 109.47145 * 299.99712 * 10 9 6 40 40 H 1.08996 * 109.47090 * 299.33232 * 11 9 6 41 41 H 1.08992 * 109.51228 * 179.26349 * 11 9 6 42 42 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 0.4932 0.9912 6 6 5.5630 0.4649 0.9051 7 6 6.1162 -0.4924 1.9628 8 6 5.9873 -0.0103 -0.4859 9 7 6.0896 1.8160 1.1434 10 6 7.5586 1.8161 1.1439 11 6 5.5634 2.7660 0.1532 12 6 4.0355 2.7938 0.2388 13 1 3.7329 3.1325 1.2297 14 6 3.4906 3.7366 -0.8029 15 1 2.8232 3.3686 -1.5681 16 6 3.8484 5.0680 -0.7823 17 7 4.6609 5.5162 0.1497 18 14 3.1790 6.2351 -2.0782 19 1 2.2931 5.4883 -3.0067 20 1 2.4054 7.3169 -1.4178 21 1 4.3073 6.8279 -2.8405 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.7330 0.8055 1.9907 30 1 3.6408 -0.5021 0.7863 31 1 5.7240 -1.4940 1.7869 32 1 7.2044 -0.5119 1.9015 33 1 5.8145 -0.1528 2.9536 34 1 5.5938 0.6726 -1.2389 35 1 7.0755 -0.0299 -0.5470 36 1 5.5950 -1.0117 -0.6631 37 1 7.9223 1.4645 0.1784 38 1 7.9219 2.8283 1.3220 39 1 7.9217 1.1557 1.9314 40 1 5.8659 2.4538 -0.8463 41 1 5.9572 3.7613 0.3584 42 1 4.9123 6.4530 0.1643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250057235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:29 Heat of formation + Delta-G solvation = 9.406437 kcal Electronic energy + Delta-G solvation = -19118.709556 eV Core-core repulsion = 16519.729286 eV Total energy + Delta-G solvation = -2598.980270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.27739 -35.90579 -33.60723 -32.08659 -31.42934 -28.01705 -27.05973 -26.56940 -24.66227 -23.97369 -22.87862 -20.30094 -19.90947 -17.49972 -16.48158 -15.26604 -15.18897 -14.60128 -14.28775 -13.90762 -13.64331 -13.49510 -13.22271 -12.77960 -12.52899 -12.04233 -11.90037 -11.72283 -11.51281 -11.42404 -11.19108 -10.97968 -10.94156 -10.65693 -10.58833 -10.51361 -10.27475 -10.13658 -10.00172 -9.89184 -9.35243 -8.83103 -8.45744 -7.38237 -7.03818 -6.02252 -4.06749 3.29036 3.37282 3.41553 4.39980 4.76416 4.95589 5.30162 5.38517 5.41648 5.47490 5.64853 5.69456 5.79502 5.91887 5.97932 6.05403 6.08345 6.15446 6.17290 6.22242 6.27340 6.31991 6.37665 6.44787 6.46328 6.55075 6.63163 6.72197 6.77419 6.85967 7.00464 7.14879 7.42754 7.62342 7.80360 8.01020 8.06771 8.20552 8.36912 8.65953 9.01995 9.58587 11.04428 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.010898 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.592412 B = 2568.766007 C = 3896.817909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.071 3.929 4 N -0.535 5.535 5 C 0.067 3.933 6 C 0.107 3.893 7 C -0.138 4.138 8 C -0.167 4.167 9 N -0.537 5.537 10 C 0.025 3.975 11 C 0.066 3.934 12 C 0.223 3.777 13 H 0.007 0.993 14 C -0.505 4.505 15 H 0.064 0.936 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.105 0.895 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -10.113 1.355 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.058 4.058 4 N -0.260 5.260 5 C -0.062 4.062 6 C 0.017 3.983 7 C -0.196 4.196 8 C -0.226 4.226 9 N -0.262 5.262 10 C -0.124 4.124 11 C -0.061 4.061 12 C 0.117 3.883 13 H 0.024 0.976 14 C -0.544 4.544 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.123 0.877 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.086 -9.917 1.415 10.018 hybrid contribution -0.206 0.758 -0.656 1.024 sum -0.119 -9.159 0.759 9.191 Atomic orbital electron populations 1.21722 0.96420 1.00708 1.01735 1.21740 0.94979 0.98334 1.01623 1.21924 0.88631 0.94224 1.00972 1.62287 1.06249 1.10144 1.47351 1.22116 0.93067 0.96792 0.94178 1.21021 0.94649 0.89375 0.93277 1.21878 1.00464 0.98046 0.99188 1.22304 0.99608 1.01318 0.99379 1.62522 1.06116 1.05969 1.51569 1.22338 0.89621 1.01402 0.99020 1.22487 0.97334 0.95773 0.90476 1.19254 0.90315 0.82899 0.95854 0.97586 1.21180 1.28101 0.92325 1.12779 0.91758 1.24961 0.95168 0.98185 0.95831 1.69901 1.34670 1.15065 1.33210 0.86484 0.78771 0.80825 0.81612 1.19749 1.21121 1.21086 0.92770 0.93396 0.93063 0.91838 0.92510 0.95889 0.90505 0.95640 0.91616 0.92971 0.92807 0.92366 0.90468 0.93991 0.93419 0.96333 0.92055 0.92498 0.96188 0.87687 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.60 16 2 C -0.13 -2.01 5.20 -26.73 -0.14 -2.15 16 3 C 0.07 1.39 4.70 -3.82 -0.02 1.38 16 4 N -0.54 -11.58 3.98 -227.88 -0.91 -12.49 16 5 C 0.07 1.28 3.64 -3.77 -0.01 1.27 16 6 C 0.11 1.94 0.68 -131.54 -0.09 1.85 16 7 C -0.14 -2.05 8.14 37.16 0.30 -1.75 16 8 C -0.17 -2.92 7.65 37.16 0.28 -2.64 16 9 N -0.54 -11.14 4.73 -227.01 -1.07 -12.21 16 10 C 0.02 0.44 8.81 60.06 0.53 0.97 16 11 C 0.07 1.61 4.28 -3.76 -0.02 1.59 16 12 C 0.22 5.67 1.90 -68.81 -0.13 5.54 16 13 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 14 C -0.50 -13.68 8.02 -34.44 -0.28 -13.95 16 15 H 0.06 1.75 6.51 -52.49 -0.34 1.41 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -25.13 11.35 55.43 0.63 -24.50 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.85 6.26 -51.93 -0.33 0.53 16 27 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.08 1.61 6.68 -51.93 -0.35 1.27 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.11 5.99 -51.93 -0.31 0.80 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.74 6.36 -51.93 -0.33 0.41 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.57 5.94 -51.93 -0.31 1.26 16 35 H 0.04 0.68 6.48 -51.92 -0.34 0.35 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.02 0.32 6.39 -51.93 -0.33 -0.02 16 38 H 0.06 1.10 8.13 -51.92 -0.42 0.68 16 39 H 0.06 0.88 6.25 -51.93 -0.32 0.55 16 40 H 0.02 0.50 6.35 -51.93 -0.33 0.17 16 41 H 0.11 2.84 6.12 -51.93 -0.32 2.52 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -27.77 306.30 -8.44 -36.21 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.39 Total: 0.15 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 0.71 Total: -7.94 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -1.35 Total: -49.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.77 -8.44 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250057235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.618 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds