Wall clock time and date at job start Mon Mar 30 2020 03:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46822 * 2 1 4 4 N 1.46901 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.46956 * 111.00163 * 313.80140 * 4 3 2 6 6 C 1.53047 * 109.36402 * 176.80533 * 5 4 3 7 7 C 1.53003 * 109.48960 * 178.36800 * 6 5 4 8 8 C 1.52999 * 109.49144 * 298.43655 * 6 5 4 9 9 N 1.46957 * 109.36434 * 58.40397 * 6 5 4 10 10 C 1.46895 * 111.00388 * 176.80978 * 9 6 5 11 11 C 1.46965 * 110.89914 * 300.69018 * 9 6 5 12 12 C 1.46956 * 111.00162 * 189.99707 * 4 3 2 13 13 H 1.09003 * 109.48596 * 63.20522 * 12 4 3 14 14 C 1.50697 * 109.48802 * 303.16282 * 12 4 3 15 15 H 1.07991 * 120.00449 * 359.76396 * 14 12 4 16 16 C 1.37885 * 119.99686 * 180.02562 * 14 12 4 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 12 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 H 1.09003 * 109.46875 * 60.00179 * 1 2 3 23 23 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47364 * 300.00262 * 1 2 3 25 25 H 1.08994 * 109.47583 * 240.00196 * 2 1 3 26 26 H 1.08999 * 109.47085 * 119.99347 * 2 1 3 27 27 H 1.09003 * 109.46683 * 59.99545 * 3 2 1 28 28 H 1.08993 * 109.47433 * 299.99528 * 3 2 1 29 29 H 1.08990 * 109.49170 * 296.77877 * 5 4 3 30 30 H 1.09003 * 109.48722 * 56.82461 * 5 4 3 31 31 H 1.08998 * 109.46584 * 60.00603 * 7 6 5 32 32 H 1.09004 * 109.46564 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47210 * 300.00149 * 7 6 5 34 34 H 1.09004 * 109.47457 * 60.00236 * 8 6 5 35 35 H 1.09009 * 109.47099 * 179.97438 * 8 6 5 36 36 H 1.08997 * 109.47382 * 299.99740 * 8 6 5 37 37 H 1.09000 * 109.47088 * 59.99995 * 10 9 6 38 38 H 1.09007 * 109.47448 * 179.97438 * 10 9 6 39 39 H 1.08996 * 109.47145 * 299.99712 * 10 9 6 40 40 H 1.08996 * 109.47090 * 299.33232 * 11 9 6 41 41 H 1.08992 * 109.51228 * 179.26349 * 11 9 6 42 42 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 0.4932 0.9912 6 6 5.5630 0.4649 0.9051 7 6 6.1162 -0.4924 1.9628 8 6 5.9873 -0.0103 -0.4859 9 7 6.0896 1.8160 1.1434 10 6 7.5586 1.8161 1.1439 11 6 5.5634 2.7660 0.1532 12 6 4.0355 2.7938 0.2388 13 1 3.7329 3.1325 1.2297 14 6 3.4906 3.7366 -0.8029 15 1 2.8232 3.3686 -1.5681 16 6 3.8484 5.0680 -0.7823 17 7 4.6609 5.5162 0.1497 18 14 3.1790 6.2351 -2.0782 19 1 2.2931 5.4883 -3.0067 20 1 2.4054 7.3169 -1.4178 21 1 4.3073 6.8279 -2.8405 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.7330 0.8055 1.9907 30 1 3.6408 -0.5021 0.7863 31 1 5.7240 -1.4940 1.7869 32 1 7.2044 -0.5119 1.9015 33 1 5.8145 -0.1528 2.9536 34 1 5.5938 0.6726 -1.2389 35 1 7.0755 -0.0299 -0.5470 36 1 5.5950 -1.0117 -0.6631 37 1 7.9223 1.4645 0.1784 38 1 7.9219 2.8283 1.3220 39 1 7.9217 1.1557 1.9314 40 1 5.8659 2.4538 -0.8463 41 1 5.9572 3.7613 0.3584 42 1 4.9123 6.4530 0.1643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250057235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:29 Heat of formation + Delta-G solvation = -9.079269 kcal Electronic energy + Delta-G solvation = -19119.511156 eV Core-core repulsion = 16519.729286 eV Total energy + Delta-G solvation = -2599.781870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90210 -37.46834 -35.47954 -33.53875 -33.19098 -29.69320 -28.64209 -27.99217 -26.24210 -25.71354 -24.44553 -22.01680 -21.45105 -19.12577 -18.52166 -17.05301 -16.75556 -16.22162 -15.82968 -15.60069 -15.23243 -15.05951 -14.75348 -14.22860 -14.00069 -13.80994 -13.31603 -13.17643 -12.93676 -12.82198 -12.78961 -12.58018 -12.50506 -12.33944 -12.06423 -12.02332 -11.94819 -11.87310 -11.65397 -11.48602 -11.00409 -10.74079 -10.53652 -9.04156 -8.83626 -8.13005 -6.25418 1.38923 1.40663 1.52622 2.40160 3.08386 3.27135 3.37816 3.97796 4.08915 4.20099 4.26027 4.31128 4.45406 4.54140 4.58449 4.70075 4.72731 4.81068 4.83001 4.84870 4.91339 4.96054 4.98243 5.01217 5.05121 5.12029 5.17810 5.23679 5.32179 5.36245 5.39891 5.49795 5.62643 5.66262 5.72648 6.16103 6.31592 6.38704 6.59121 6.78793 6.91253 7.44139 8.92942 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.010898 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.592412 B = 2568.766007 C = 3896.817909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.071 3.929 4 N -0.538 5.538 5 C 0.066 3.934 6 C 0.100 3.900 7 C -0.130 4.130 8 C -0.158 4.158 9 N -0.554 5.554 10 C 0.027 3.973 11 C 0.086 3.914 12 C 0.232 3.768 13 H -0.044 1.044 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.279 1.279 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.001 0.999 28 H 0.057 0.943 29 H 0.008 0.992 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.006 0.994 41 H 0.071 0.929 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 -12.393 1.032 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.057 4.057 4 N -0.262 5.262 5 C -0.062 4.062 6 C 0.010 3.990 7 C -0.187 4.187 8 C -0.217 4.217 9 N -0.279 5.279 10 C -0.121 4.121 11 C -0.042 4.042 12 C 0.124 3.876 13 H -0.027 1.027 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.785 3.215 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.205 1.205 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.019 0.981 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.089 0.911 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.099 -12.223 1.097 12.273 hybrid contribution -0.215 1.440 -0.514 1.544 sum -0.116 -10.783 0.583 10.799 Atomic orbital electron populations 1.21697 0.94450 1.02441 1.01606 1.21644 0.96637 0.94854 1.02327 1.21950 0.87705 0.97146 0.98929 1.62259 1.07319 1.08456 1.48204 1.22274 0.94177 0.97230 0.92504 1.21249 0.93937 0.88619 0.95216 1.21822 1.01321 0.98182 0.97407 1.22191 1.00322 1.01602 0.97572 1.62439 1.08060 1.07115 1.50256 1.22378 0.87632 1.01649 1.00434 1.21993 0.96448 0.95171 0.90591 1.18976 0.91289 0.84728 0.92585 1.02672 1.21417 1.28252 0.93271 1.13023 0.92367 1.25738 0.95372 0.99718 0.97750 1.70045 1.35524 1.15360 1.34670 0.85482 0.78244 0.78634 0.79144 1.19144 1.20684 1.20522 0.92951 0.90658 0.93267 0.91209 0.91456 0.98094 0.92456 0.97328 0.88543 0.90247 0.91357 0.92831 0.93932 0.92769 0.90978 0.95651 0.93160 0.89490 0.97555 0.91130 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.81 16 2 C -0.12 -3.45 5.20 30.60 0.16 -3.29 16 3 C 0.07 2.85 4.70 86.31 0.41 3.26 16 4 N -0.54 -23.72 3.98 -874.89 -3.49 -27.21 16 5 C 0.07 2.47 3.64 86.31 0.31 2.78 16 6 C 0.10 3.44 0.68 3.53 0.00 3.45 16 7 C -0.13 -3.38 8.14 71.98 0.59 -2.80 16 8 C -0.16 -5.17 7.65 71.98 0.55 -4.62 16 9 N -0.55 -23.03 4.73 -872.13 -4.13 -27.15 16 10 C 0.03 0.93 8.81 127.69 1.12 2.05 16 11 C 0.09 4.35 4.28 86.31 0.37 4.72 16 12 C 0.23 12.34 1.90 44.17 0.08 12.43 16 13 H -0.04 -2.74 8.14 -2.39 -0.02 -2.76 16 14 C -0.52 -29.43 8.02 25.60 0.21 -29.22 16 15 H 0.06 3.28 6.51 -2.92 -0.02 3.26 16 16 C 0.01 0.75 5.30 84.66 0.45 1.20 16 17 N -0.92 -53.87 11.35 21.45 0.24 -53.62 16 18 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.07 1.85 6.26 -2.39 -0.01 1.83 16 27 H 0.00 0.03 8.08 -2.39 -0.02 0.01 16 28 H 0.06 2.49 6.68 -2.39 -0.02 2.48 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 2.98 5.99 -2.39 -0.01 2.96 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.60 6.36 -2.38 -0.02 1.58 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.69 5.94 -2.38 -0.01 1.68 16 35 H 0.05 1.62 6.48 -2.38 -0.02 1.61 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.03 0.83 6.39 -2.39 -0.02 0.82 16 38 H 0.05 1.81 8.13 -2.38 -0.02 1.79 16 39 H 0.09 2.45 6.25 -2.39 -0.01 2.44 16 40 H 0.01 0.33 6.35 -2.39 -0.02 0.31 16 41 H 0.07 4.03 6.12 -2.39 -0.01 4.02 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -63.18 306.30 0.59 -62.60 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.97 Total: 11.79 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 4.96 Total: -12.85 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -7.37 Total: -107.98 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -63.18 0.59 -62.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250057235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.516 kcal (2) G-P(sol) polarization free energy of solvation -63.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds