Wall clock time and date at job start Mon Mar 30 2020 04:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 N 1.46899 * 109.47371 * 120.00037 * 2 1 3 5 5 C 1.46900 * 111.00174 * 73.39262 * 4 2 1 6 6 C 1.50700 * 109.47299 * 71.68642 * 5 4 2 7 7 H 1.07996 * 119.99509 * 355.11108 * 6 5 4 8 8 C 1.37871 * 120.00021 * 175.10461 * 6 5 4 9 9 N 1.31511 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47248 * 119.99903 * 10 8 6 13 13 H 1.48501 * 109.46514 * 240.00193 * 10 8 6 14 14 C 1.46900 * 110.99787 * 309.44099 * 4 2 1 15 15 H 1.09005 * 109.47320 * 328.71604 * 14 4 2 16 16 C 1.52998 * 109.47394 * 88.72107 * 14 4 2 17 17 C 1.53001 * 109.47313 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47077 * 300.00053 * 17 16 14 19 19 C 1.52997 * 109.47461 * 59.99750 * 18 17 16 20 20 C 1.53001 * 109.47179 * 300.00188 * 19 18 17 21 21 H 1.09000 * 109.47518 * 180.02562 * 20 19 18 22 22 N 1.46897 * 109.47072 * 299.99896 * 20 19 18 23 23 H 1.09001 * 109.47642 * 304.33273 * 1 2 3 24 24 H 1.08998 * 109.47552 * 64.33452 * 1 2 3 25 25 H 1.08998 * 109.47217 * 184.33185 * 1 2 3 26 26 H 1.09002 * 109.47518 * 239.99981 * 2 1 3 27 27 H 1.09003 * 109.47091 * 184.76842 * 3 2 1 28 28 H 1.08996 * 109.47519 * 304.76546 * 3 2 1 29 29 H 1.09004 * 109.47097 * 64.77307 * 3 2 1 30 30 H 1.08993 * 109.47480 * 191.69381 * 5 4 2 31 31 H 1.09004 * 109.46764 * 311.68800 * 5 4 2 32 32 H 0.97005 * 119.99808 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47289 * 59.99969 * 16 14 4 34 34 H 1.09007 * 109.46969 * 299.99536 * 16 14 4 35 35 H 1.08995 * 109.47094 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.46936 * 59.99338 * 17 16 14 37 37 H 1.08997 * 109.47486 * 180.02562 * 18 17 16 38 38 H 1.09011 * 109.46989 * 299.99801 * 18 17 16 39 39 H 1.09000 * 109.47424 * 60.00181 * 19 18 17 40 40 H 1.09007 * 109.47339 * 180.02562 * 19 18 17 41 41 H 1.00902 * 111.00441 * 299.99807 * 22 20 19 42 42 H 1.00901 * 110.99961 * 63.95333 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8256 -2.1441 1.0853 6 6 2.7958 -2.7029 0.0766 7 1 3.4326 -2.0368 -0.4865 8 6 2.8706 -4.0644 -0.1272 9 7 2.0948 -4.8755 0.5583 10 14 4.0737 -4.7571 -1.3771 11 1 4.8251 -3.6439 -2.0105 12 1 5.0244 -5.6716 -0.6950 13 1 3.3276 -5.5064 -2.4197 14 6 1.3737 -0.1686 2.4103 15 1 1.1406 0.8870 2.2702 16 6 0.0825 -0.9451 2.6762 17 6 -0.5899 -0.3999 3.9378 18 6 0.3560 -0.5598 5.1296 19 6 1.6473 0.2166 4.8637 20 6 2.3197 -0.3286 3.6022 21 1 3.2398 0.2242 3.4130 22 7 2.6337 -1.7512 3.7905 23 1 -0.3634 0.5796 0.8486 24 1 -0.3634 0.4451 -0.9262 25 1 -0.3633 -1.0247 0.0776 26 1 1.8933 -0.5138 -0.8900 27 1 3.1265 1.4438 -0.0854 28 1 1.6085 1.9804 -0.8442 29 1 1.7480 1.9311 0.9297 30 1 1.9998 -2.6113 2.0545 31 1 0.8055 -2.3499 0.7610 32 1 2.1476 -5.8334 0.4152 33 1 0.3156 -2.0005 2.8165 34 1 -0.5913 -0.8314 1.8269 35 1 -1.5100 -0.9528 4.1270 36 1 -0.8228 0.6557 3.7980 37 1 -0.1231 -0.1718 6.0285 38 1 0.5891 -1.6155 5.2694 39 1 1.4143 1.2722 4.7240 40 1 2.3214 0.1023 5.7127 41 1 3.2576 -1.8834 4.5725 42 1 1.7917 -2.2955 3.9037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250485050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:51 Heat of formation + Delta-G solvation = 4.632914 kcal Electronic energy + Delta-G solvation = -19286.572355 eV Core-core repulsion = 16687.385089 eV Total energy + Delta-G solvation = -2599.187265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69554 -36.30064 -32.71137 -32.31901 -30.94052 -28.94095 -28.04520 -26.68089 -25.46830 -22.59270 -21.87477 -21.28071 -19.28698 -17.96350 -16.29866 -15.81102 -14.91230 -14.84524 -14.28663 -14.09416 -13.98086 -13.56108 -13.21491 -12.80591 -12.38072 -12.19069 -11.93641 -11.74448 -11.64043 -11.33214 -11.12118 -10.91941 -10.87679 -10.64102 -10.52907 -10.50075 -10.17219 -9.93947 -9.86342 -9.51601 -9.34574 -8.89103 -8.26137 -7.65939 -6.88088 -5.81750 -3.77746 3.41561 3.48860 3.54040 4.58633 4.85777 5.01290 5.06071 5.27106 5.32219 5.54196 5.56207 5.65445 5.66909 5.76570 5.82810 5.89216 5.92304 5.94660 6.05299 6.09488 6.19768 6.23449 6.26658 6.34899 6.36301 6.45024 6.52994 6.59592 6.74764 6.88043 6.96343 7.01688 7.62764 7.75278 7.88180 8.04328 8.12437 8.46230 8.63301 8.87082 9.29710 9.83022 11.29123 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.008702 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.152307 B = 3216.936213 C = 3734.926045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.076 3.924 3 C -0.139 4.139 4 N -0.511 5.511 5 C 0.183 3.817 6 C -0.488 4.488 7 H 0.055 0.945 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.889 3.111 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.289 1.289 14 C 0.094 3.906 15 H 0.065 0.935 16 C -0.169 4.169 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.155 4.155 20 C 0.108 3.892 21 H 0.078 0.922 22 N -0.816 5.816 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.076 0.924 31 H -0.020 1.020 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.324 0.676 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 10.362 6.849 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.033 4.033 3 C -0.196 4.196 4 N -0.233 5.233 5 C 0.058 3.942 6 C -0.527 4.527 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.543 5.543 10 Si 0.717 3.283 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.216 1.216 14 C -0.016 4.016 15 H 0.083 0.917 16 C -0.208 4.208 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.195 4.195 20 C -0.005 4.005 21 H 0.096 0.904 22 N -0.346 5.346 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.093 0.907 31 H -0.002 1.002 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.136 0.864 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.276 10.285 6.148 12.422 hybrid contribution -0.765 -0.546 0.213 0.964 sum -4.041 9.738 6.362 12.314 Atomic orbital electron populations 1.22715 0.99341 1.01811 1.00289 1.21641 0.91319 0.94091 0.96276 1.21853 1.01370 0.96437 0.99983 1.62363 1.54627 1.07812 0.98514 1.20096 0.93822 0.80624 0.99643 1.21253 1.20102 0.91180 1.20207 0.92640 1.24885 0.96114 0.97130 0.96488 1.69957 1.39642 1.02903 1.41761 0.86594 0.81321 0.78931 0.81405 1.19964 1.21321 1.21560 1.21588 0.90852 0.97450 0.91684 0.91739 1.22754 0.98449 1.02105 0.97478 1.21522 0.97895 1.00523 0.95479 1.21518 0.96093 1.00365 0.97750 1.22426 0.97208 1.00254 0.99626 1.21378 0.97570 0.89532 0.91973 0.90406 1.58979 1.20128 1.07130 1.48412 0.93060 0.93862 0.91864 0.89524 0.92485 0.93713 0.93578 0.90684 1.00213 0.93530 0.90308 0.90672 0.92714 0.92761 0.92780 0.92260 0.92154 0.92580 0.86396 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 7.34 37.15 0.27 -2.89 16 2 C 0.08 1.46 2.77 -67.72 -0.19 1.27 16 3 C -0.14 -2.22 9.28 37.16 0.34 -1.87 16 4 N -0.51 -10.70 4.24 -220.15 -0.93 -11.63 16 5 C 0.18 4.60 3.04 -4.98 -0.02 4.59 16 6 C -0.49 -13.88 8.49 -34.44 -0.29 -14.18 16 7 H 0.06 1.60 7.43 -52.49 -0.39 1.21 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 10 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.09 1.63 1.47 -67.71 -0.10 1.53 16 15 H 0.06 1.06 5.44 -51.93 -0.28 0.78 16 16 C -0.17 -2.84 3.37 -26.73 -0.09 -2.93 16 17 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 18 C -0.12 -1.51 5.66 -26.74 -0.15 -1.66 16 19 C -0.15 -1.99 5.61 -26.73 -0.15 -2.14 16 20 C 0.11 1.74 3.35 -67.71 -0.23 1.51 16 21 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 22 N -0.82 -14.36 6.91 -4.67 -0.03 -14.39 16 23 H 0.05 0.81 5.77 -51.93 -0.30 0.51 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.23 5.55 -51.93 -0.29 0.94 16 26 H 0.09 1.90 6.96 -51.93 -0.36 1.54 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.69 6.33 -51.93 -0.33 0.36 16 30 H 0.08 1.97 4.34 -51.93 -0.23 1.74 16 31 H -0.02 -0.53 5.70 -51.93 -0.30 -0.83 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.08 1.54 4.94 -51.93 -0.26 1.28 16 34 H 0.07 1.31 4.28 -51.92 -0.22 1.09 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.78 6.76 -51.92 -0.35 0.43 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.32 4.97 9.04 -39.29 -0.36 4.62 16 42 H 0.34 6.06 4.83 -39.29 -0.19 5.87 16 LS Contribution 296.01 15.07 4.46 4.46 Total: -1.00 -29.47 296.01 -8.43 -37.90 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.79 Total: 9.61 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.85 Total: -17.06 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.23 Total: -52.21 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.47 -8.43 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250485050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.531 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds