Wall clock time and date at job start Mon Mar 30 2020 04:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 N 1.46899 * 109.47371 * 120.00037 * 2 1 3 5 5 C 1.46900 * 111.00174 * 73.39262 * 4 2 1 6 6 C 1.50700 * 109.47299 * 71.68642 * 5 4 2 7 7 H 1.07996 * 119.99509 * 355.11108 * 6 5 4 8 8 C 1.37871 * 120.00021 * 175.10461 * 6 5 4 9 9 N 1.31511 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47248 * 119.99903 * 10 8 6 13 13 H 1.48501 * 109.46514 * 240.00193 * 10 8 6 14 14 C 1.46900 * 110.99787 * 309.44099 * 4 2 1 15 15 H 1.09005 * 109.47320 * 328.71604 * 14 4 2 16 16 C 1.52998 * 109.47394 * 88.72107 * 14 4 2 17 17 C 1.53001 * 109.47313 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47077 * 300.00053 * 17 16 14 19 19 C 1.52997 * 109.47461 * 59.99750 * 18 17 16 20 20 C 1.53001 * 109.47179 * 300.00188 * 19 18 17 21 21 H 1.09000 * 109.47518 * 180.02562 * 20 19 18 22 22 N 1.46897 * 109.47072 * 299.99896 * 20 19 18 23 23 H 1.09001 * 109.47642 * 304.33273 * 1 2 3 24 24 H 1.08998 * 109.47552 * 64.33452 * 1 2 3 25 25 H 1.08998 * 109.47217 * 184.33185 * 1 2 3 26 26 H 1.09002 * 109.47518 * 239.99981 * 2 1 3 27 27 H 1.09003 * 109.47091 * 184.76842 * 3 2 1 28 28 H 1.08996 * 109.47519 * 304.76546 * 3 2 1 29 29 H 1.09004 * 109.47097 * 64.77307 * 3 2 1 30 30 H 1.08993 * 109.47480 * 191.69381 * 5 4 2 31 31 H 1.09004 * 109.46764 * 311.68800 * 5 4 2 32 32 H 0.97005 * 119.99808 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47289 * 59.99969 * 16 14 4 34 34 H 1.09007 * 109.46969 * 299.99536 * 16 14 4 35 35 H 1.08995 * 109.47094 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.46936 * 59.99338 * 17 16 14 37 37 H 1.08997 * 109.47486 * 180.02562 * 18 17 16 38 38 H 1.09011 * 109.46989 * 299.99801 * 18 17 16 39 39 H 1.09000 * 109.47424 * 60.00181 * 19 18 17 40 40 H 1.09007 * 109.47339 * 180.02562 * 19 18 17 41 41 H 1.00902 * 111.00441 * 299.99807 * 22 20 19 42 42 H 1.00901 * 110.99961 * 63.95333 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8256 -2.1441 1.0853 6 6 2.7958 -2.7029 0.0766 7 1 3.4326 -2.0368 -0.4865 8 6 2.8706 -4.0644 -0.1272 9 7 2.0948 -4.8755 0.5583 10 14 4.0737 -4.7571 -1.3771 11 1 4.8251 -3.6439 -2.0105 12 1 5.0244 -5.6716 -0.6950 13 1 3.3276 -5.5064 -2.4197 14 6 1.3737 -0.1686 2.4103 15 1 1.1406 0.8870 2.2702 16 6 0.0825 -0.9451 2.6762 17 6 -0.5899 -0.3999 3.9378 18 6 0.3560 -0.5598 5.1296 19 6 1.6473 0.2166 4.8637 20 6 2.3197 -0.3286 3.6022 21 1 3.2398 0.2242 3.4130 22 7 2.6337 -1.7512 3.7905 23 1 -0.3634 0.5796 0.8486 24 1 -0.3634 0.4451 -0.9262 25 1 -0.3633 -1.0247 0.0776 26 1 1.8933 -0.5138 -0.8900 27 1 3.1265 1.4438 -0.0854 28 1 1.6085 1.9804 -0.8442 29 1 1.7480 1.9311 0.9297 30 1 1.9998 -2.6113 2.0545 31 1 0.8055 -2.3499 0.7610 32 1 2.1476 -5.8334 0.4152 33 1 0.3156 -2.0005 2.8165 34 1 -0.5913 -0.8314 1.8269 35 1 -1.5100 -0.9528 4.1270 36 1 -0.8228 0.6557 3.7980 37 1 -0.1231 -0.1718 6.0285 38 1 0.5891 -1.6155 5.2694 39 1 1.4143 1.2722 4.7240 40 1 2.3214 0.1023 5.7127 41 1 3.2576 -1.8834 4.5725 42 1 1.7917 -2.2955 3.9037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250485050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:50 Heat of formation + Delta-G solvation = -15.368021 kcal Electronic energy + Delta-G solvation = -19287.439660 eV Core-core repulsion = 16687.385089 eV Total energy + Delta-G solvation = -2600.054571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08813 -37.70040 -34.76646 -33.66596 -32.42538 -30.42773 -29.56044 -28.03057 -27.27391 -24.30597 -23.12091 -22.76227 -20.64915 -19.42511 -18.21056 -17.44545 -16.53016 -16.30912 -15.95524 -15.50269 -15.28506 -14.87081 -14.75946 -14.31071 -13.89705 -13.61866 -13.46029 -13.08416 -13.02380 -12.82735 -12.69793 -12.54964 -12.41791 -12.30308 -12.12746 -11.99033 -11.72417 -11.48603 -11.17158 -11.10481 -10.96455 -10.67668 -10.42452 -9.06066 -8.56534 -8.03023 -6.06741 1.40143 1.41566 1.53626 2.48490 3.27980 3.45475 3.83187 3.92458 4.02442 4.13380 4.22637 4.34596 4.35765 4.48530 4.55044 4.61273 4.70206 4.78483 4.79887 4.83527 4.86453 5.01076 5.04246 5.10806 5.17578 5.23830 5.28335 5.32789 5.41536 5.44028 5.51819 5.61086 5.67805 5.81080 5.92525 6.35572 6.57294 6.74759 6.88430 7.05191 7.13101 7.58843 9.06218 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.008702 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.152307 B = 3216.936213 C = 3734.926045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 C -0.127 4.127 4 N -0.523 5.523 5 C 0.204 3.796 6 C -0.505 4.505 7 H 0.043 0.957 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.952 3.048 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.094 3.906 15 H 0.083 0.917 16 C -0.162 4.162 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.143 4.143 20 C 0.108 3.892 21 H 0.068 0.932 22 N -0.838 5.838 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H -0.050 1.050 32 H 0.257 0.743 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.334 0.666 42 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 12.295 7.625 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.041 4.041 3 C -0.185 4.185 4 N -0.245 5.245 5 C 0.078 3.922 6 C -0.544 4.544 7 H 0.061 0.939 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.779 3.221 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.209 1.209 14 C -0.015 4.015 15 H 0.101 0.899 16 C -0.201 4.201 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.183 4.183 20 C -0.004 4.004 21 H 0.086 0.914 22 N -0.370 5.370 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.083 0.917 31 H -0.033 1.033 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.148 0.852 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.436 12.243 6.931 14.482 hybrid contribution -0.720 -1.129 -0.046 1.340 sum -4.156 11.114 6.884 13.718 Atomic orbital electron populations 1.22566 0.97818 1.00380 1.02153 1.21689 0.92623 0.95568 0.94177 1.21742 1.00802 0.94048 1.01876 1.62256 1.56026 1.05559 1.00659 1.19686 0.91134 0.83449 0.97914 1.21596 1.20417 0.91508 1.20860 0.93854 1.25656 0.97842 0.97541 0.98377 1.70073 1.40996 1.03109 1.43122 0.85598 0.79203 0.78171 0.79159 1.19577 1.20773 1.20872 1.21718 0.91228 0.98040 0.90548 0.89911 1.22600 0.98281 1.00128 0.99079 1.21485 0.97979 1.01382 0.93953 1.21513 0.95867 0.99890 0.98207 1.22287 0.97181 1.00820 0.97998 1.21370 0.97199 0.88719 0.93153 0.91430 1.58901 1.20434 1.08326 1.49375 0.91080 0.91933 0.94970 0.93255 0.93380 0.91341 0.91947 0.91745 1.03254 0.93430 0.93784 0.91719 0.92114 0.90913 0.90286 0.93402 0.90522 0.91179 0.85227 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.83 7.34 71.98 0.53 -5.30 16 2 C 0.07 2.64 2.77 44.91 0.12 2.76 16 3 C -0.13 -3.82 9.28 71.98 0.67 -3.15 16 4 N -0.52 -22.24 4.24 -850.42 -3.61 -25.84 16 5 C 0.20 10.72 3.04 85.56 0.26 10.98 16 6 C -0.50 -29.71 8.49 25.60 0.22 -29.49 16 7 H 0.04 2.59 7.43 -2.91 -0.02 2.57 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -57.13 13.29 21.44 0.28 -56.85 16 10 Si 0.95 46.67 29.54 68.60 2.03 48.70 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 C 0.09 3.16 1.47 44.92 0.07 3.23 16 15 H 0.08 2.49 5.44 -2.38 -0.01 2.48 16 16 C -0.16 -5.42 3.37 30.59 0.10 -5.32 16 17 C -0.11 -2.73 5.92 30.59 0.18 -2.55 16 18 C -0.12 -2.64 5.66 30.59 0.17 -2.47 16 19 C -0.14 -3.25 5.61 30.59 0.17 -3.08 16 20 C 0.11 3.34 3.35 44.92 0.15 3.49 16 21 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 22 N -0.84 -29.81 6.91 -168.68 -1.16 -30.97 16 23 H 0.07 2.11 5.77 -2.39 -0.01 2.10 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.03 1.29 5.55 -2.39 -0.01 1.27 16 26 H 0.05 2.24 6.96 -2.39 -0.02 2.22 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.66 6.33 -2.39 -0.02 1.65 16 30 H 0.06 3.53 4.34 -2.39 -0.01 3.52 16 31 H -0.05 -2.88 5.70 -2.38 -0.01 -2.89 16 32 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 33 H 0.04 1.78 4.94 -2.39 -0.01 1.77 16 34 H 0.06 2.27 4.28 -2.38 -0.01 2.26 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.20 6.76 -2.38 -0.02 1.18 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.33 10.26 9.04 -89.69 -0.81 9.45 16 42 H 0.33 12.32 4.83 -89.69 -0.43 11.88 16 Total: -1.00 -65.29 296.01 0.42 -64.87 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.22 Total: 30.35 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.11 Total: -30.26 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.49 Total: -113.66 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -65.29 0.42 -64.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250485050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.505 kcal (2) G-P(sol) polarization free energy of solvation -65.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds