Wall clock time and date at job start Mon Mar 30 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46964 * 2 1 4 4 N 1.46891 * 109.47378 * 120.00128 * 2 1 3 5 5 C 1.46907 * 111.00172 * 167.09286 * 4 2 1 6 6 C 1.50700 * 109.46662 * 293.95579 * 5 4 2 7 7 H 1.07997 * 120.00428 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99780 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99999 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00083 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47043 * 89.99824 * 10 8 6 12 12 H 1.48503 * 109.47156 * 209.99708 * 10 8 6 13 13 H 1.48499 * 109.47305 * 329.99971 * 10 8 6 14 14 C 1.46905 * 111.00359 * 291.04725 * 4 2 1 15 15 H 1.08998 * 109.46636 * 35.27859 * 14 4 2 16 16 C 1.53003 * 109.46880 * 275.28307 * 14 4 2 17 17 C 1.52999 * 109.47094 * 179.97438 * 16 14 4 18 18 C 1.53009 * 109.46778 * 59.99924 * 17 16 14 19 19 C 1.52991 * 109.47333 * 300.00164 * 18 17 16 20 20 C 1.52995 * 109.47404 * 155.28145 * 14 4 2 21 21 H 1.09003 * 109.46855 * 59.99851 * 20 14 4 22 22 N 1.46901 * 109.47006 * 300.00107 * 20 14 4 23 23 H 1.08996 * 109.46864 * 299.99848 * 1 2 3 24 24 H 1.09000 * 109.47403 * 59.99799 * 1 2 3 25 25 H 1.08998 * 109.46781 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46942 * 240.00925 * 2 1 3 27 27 H 1.08992 * 109.46911 * 173.78940 * 3 2 1 28 28 H 1.09002 * 109.47236 * 293.79969 * 3 2 1 29 29 H 1.09005 * 109.46580 * 53.79416 * 3 2 1 30 30 H 1.08990 * 109.46810 * 53.95402 * 5 4 2 31 31 H 1.08997 * 109.46959 * 173.95603 * 5 4 2 32 32 H 0.97002 * 119.99888 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46973 * 59.99518 * 16 14 4 34 34 H 1.09003 * 109.47123 * 299.99992 * 16 14 4 35 35 H 1.08994 * 109.47342 * 300.00110 * 17 16 14 36 36 H 1.09000 * 109.47104 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46838 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.46843 * 59.99890 * 18 17 16 39 39 H 1.09007 * 109.46937 * 300.00181 * 19 18 17 40 40 H 1.09000 * 109.47612 * 180.02562 * 19 18 17 41 41 H 1.00908 * 110.99650 * 179.97438 * 22 20 14 42 42 H 1.00897 * 110.99877 * 303.94741 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.4556 -0.9831 1.0901 6 6 3.6835 -1.9794 -0.0174 7 1 2.8456 -2.3591 -0.5832 8 6 4.9617 -2.4071 -0.3077 9 7 5.9821 -1.9452 0.3816 10 14 5.2442 -3.6426 -1.6800 11 1 5.4623 -2.9204 -2.9591 12 1 6.4396 -4.4660 -1.3664 13 1 4.0553 -4.5235 -1.8055 14 6 1.7309 0.0857 2.4114 15 1 0.7743 0.5954 2.2965 16 6 2.8371 1.1201 2.6290 17 6 2.5360 1.9309 3.8910 18 6 2.4714 0.9918 5.0973 19 6 1.3654 -0.0426 4.8797 20 6 1.6667 -0.8537 3.6173 21 1 2.6233 -1.3634 3.7321 22 7 0.6047 -1.8469 3.4084 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 3.1242 1.4446 0.1112 28 1 1.7701 1.9234 -0.9403 29 1 1.5887 1.9874 0.8293 30 1 3.9966 -0.0633 0.8683 31 1 3.8150 -1.3981 2.0317 32 1 6.8813 -2.2464 0.1777 33 1 2.8828 1.7893 1.7698 34 1 3.7937 0.6103 2.7438 35 1 1.5795 2.4407 3.7758 36 1 3.3243 2.6676 4.0463 37 1 2.2565 1.5694 5.9963 38 1 3.4280 0.4820 5.2124 39 1 0.4088 0.4672 4.7644 40 1 1.3190 -0.7114 5.7391 41 1 0.5424 -2.4799 4.1917 42 1 -0.2818 -1.3972 3.2351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250485052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:53 Heat of formation + Delta-G solvation = -2.057900 kcal Electronic energy + Delta-G solvation = -19130.768663 eV Core-core repulsion = 16531.291262 eV Total energy + Delta-G solvation = -2599.477401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.51315 -36.18786 -33.14391 -32.68487 -30.95293 -29.12408 -27.49547 -26.69380 -25.51140 -22.57129 -21.60323 -21.38925 -19.57616 -18.40441 -16.12782 -15.55545 -15.23761 -14.80748 -14.52480 -14.14244 -13.56887 -13.41148 -13.19144 -13.03874 -12.52694 -12.21196 -11.99781 -11.94124 -11.54871 -11.29869 -10.98634 -10.94947 -10.78838 -10.61669 -10.59843 -10.56898 -10.29128 -10.12900 -9.91053 -9.51151 -9.36223 -8.89875 -8.31665 -7.98287 -6.87885 -5.91653 -3.90536 3.37911 3.44140 3.49629 4.51690 4.81509 4.90705 5.07999 5.32297 5.38377 5.43881 5.55758 5.57468 5.69859 5.77375 5.79766 5.86689 5.94476 6.00292 6.07716 6.13130 6.19197 6.27300 6.34351 6.38541 6.41991 6.47205 6.56101 6.61196 6.73809 6.91057 6.94720 7.01634 7.49613 7.56440 7.72694 7.96552 7.99009 8.29752 8.46067 8.77391 9.18060 9.72630 11.18997 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.008103 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.803512 B = 3454.825018 C = 3712.543774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 C -0.185 4.185 4 N -0.505 5.505 5 C 0.195 3.805 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.893 3.107 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.273 1.273 14 C 0.098 3.902 15 H 0.062 0.938 16 C -0.175 4.175 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.151 4.151 20 C 0.106 3.894 21 H 0.081 0.919 22 N -0.819 5.819 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.051 0.949 30 H -0.005 1.005 31 H 0.027 0.973 32 H 0.258 0.742 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.327 0.673 42 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 6.841 6.579 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.244 4.244 4 N -0.226 5.226 5 C 0.070 3.930 6 C -0.536 4.536 7 H 0.079 0.921 8 C -0.147 4.147 9 N -0.542 5.542 10 Si 0.721 3.279 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.198 1.198 14 C -0.012 4.012 15 H 0.080 0.920 16 C -0.214 4.214 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.192 4.192 20 C -0.007 4.007 21 H 0.099 0.901 22 N -0.345 5.345 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.012 0.988 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.059 6.085 5.962 12.436 hybrid contribution 0.384 0.587 0.188 0.726 sum -8.675 6.673 6.150 12.554 Atomic orbital electron populations 1.21824 0.96339 1.01622 0.99588 1.21591 0.93699 0.91542 0.96068 1.22803 1.02133 0.99199 1.00230 1.62331 1.20157 1.41393 0.98743 1.19710 0.81276 0.94918 0.97107 1.21226 0.92205 1.23970 1.16237 0.92059 1.24956 0.96186 0.96812 0.96741 1.69959 0.98847 1.44590 1.40788 0.86581 0.77625 0.81475 0.82221 1.20966 1.21458 1.19834 1.21537 0.96778 0.91410 0.91479 0.92009 1.22905 1.01377 0.99163 0.97972 1.21502 1.00651 0.97678 0.95420 1.21461 0.99173 0.97142 0.97531 1.22466 0.98693 0.98561 0.99453 1.21437 0.96070 0.91492 0.91670 0.90076 1.58619 1.08185 1.21163 1.46495 0.93892 0.93848 0.92129 0.89235 0.91692 0.93867 0.92966 0.98755 0.95524 0.93213 0.89848 0.90658 0.92901 0.92663 0.92911 0.91868 0.92747 0.92656 0.86089 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.22 37.16 0.34 -1.84 16 2 C 0.08 1.54 2.75 -67.71 -0.19 1.35 16 3 C -0.19 -3.22 7.28 37.16 0.27 -2.95 16 4 N -0.50 -10.55 4.16 -220.15 -0.92 -11.47 16 5 C 0.19 4.97 3.23 -4.97 -0.02 4.96 16 6 C -0.50 -14.06 8.33 -34.44 -0.29 -14.34 16 7 H 0.06 1.74 7.21 -52.49 -0.38 1.37 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 10 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.10 1.70 1.16 -67.71 -0.08 1.63 16 15 H 0.06 1.02 5.67 -51.93 -0.29 0.73 16 16 C -0.18 -2.99 3.61 -26.73 -0.10 -3.09 16 17 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 18 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 19 C -0.15 -1.99 5.49 -26.71 -0.15 -2.14 16 20 C 0.11 1.73 2.75 -67.69 -0.19 1.54 16 21 H 0.08 1.60 7.08 -51.93 -0.37 1.23 16 22 N -0.82 -12.68 9.09 -4.65 -0.04 -12.72 16 23 H 0.04 0.64 6.38 -51.93 -0.33 0.31 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.96 6.61 -51.93 -0.34 1.62 16 27 H 0.06 1.27 5.52 -51.93 -0.29 0.99 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.83 5.80 -51.93 -0.30 0.53 16 30 H -0.01 -0.14 5.38 -51.93 -0.28 -0.42 16 31 H 0.03 0.75 6.68 -51.93 -0.35 0.40 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.08 1.44 3.84 -51.93 -0.20 1.24 16 34 H 0.07 1.51 6.43 -51.93 -0.33 1.18 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.33 4.41 9.04 -39.29 -0.36 4.06 16 42 H 0.33 4.55 8.98 -39.29 -0.35 4.20 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -29.36 304.71 -8.56 -37.92 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.11 Total: 7.66 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.80 Total: -16.85 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.22 Total: -50.40 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.36 -8.56 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250485052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.864 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds