Wall clock time and date at job start Mon Mar 30 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46964 * 2 1 4 4 N 1.46891 * 109.47378 * 120.00128 * 2 1 3 5 5 C 1.46907 * 111.00172 * 167.09286 * 4 2 1 6 6 C 1.50700 * 109.46662 * 293.95579 * 5 4 2 7 7 H 1.07997 * 120.00428 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99780 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99999 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00083 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47043 * 89.99824 * 10 8 6 12 12 H 1.48503 * 109.47156 * 209.99708 * 10 8 6 13 13 H 1.48499 * 109.47305 * 329.99971 * 10 8 6 14 14 C 1.46905 * 111.00359 * 291.04725 * 4 2 1 15 15 H 1.08998 * 109.46636 * 35.27859 * 14 4 2 16 16 C 1.53003 * 109.46880 * 275.28307 * 14 4 2 17 17 C 1.52999 * 109.47094 * 179.97438 * 16 14 4 18 18 C 1.53009 * 109.46778 * 59.99924 * 17 16 14 19 19 C 1.52991 * 109.47333 * 300.00164 * 18 17 16 20 20 C 1.52995 * 109.47404 * 155.28145 * 14 4 2 21 21 H 1.09003 * 109.46855 * 59.99851 * 20 14 4 22 22 N 1.46901 * 109.47006 * 300.00107 * 20 14 4 23 23 H 1.08996 * 109.46864 * 299.99848 * 1 2 3 24 24 H 1.09000 * 109.47403 * 59.99799 * 1 2 3 25 25 H 1.08998 * 109.46781 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46942 * 240.00925 * 2 1 3 27 27 H 1.08992 * 109.46911 * 173.78940 * 3 2 1 28 28 H 1.09002 * 109.47236 * 293.79969 * 3 2 1 29 29 H 1.09005 * 109.46580 * 53.79416 * 3 2 1 30 30 H 1.08990 * 109.46810 * 53.95402 * 5 4 2 31 31 H 1.08997 * 109.46959 * 173.95603 * 5 4 2 32 32 H 0.97002 * 119.99888 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46973 * 59.99518 * 16 14 4 34 34 H 1.09003 * 109.47123 * 299.99992 * 16 14 4 35 35 H 1.08994 * 109.47342 * 300.00110 * 17 16 14 36 36 H 1.09000 * 109.47104 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46838 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.46843 * 59.99890 * 18 17 16 39 39 H 1.09007 * 109.46937 * 300.00181 * 19 18 17 40 40 H 1.09000 * 109.47612 * 180.02562 * 19 18 17 41 41 H 1.00908 * 110.99650 * 179.97438 * 22 20 14 42 42 H 1.00897 * 110.99877 * 303.94741 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.4556 -0.9831 1.0901 6 6 3.6835 -1.9794 -0.0174 7 1 2.8456 -2.3591 -0.5832 8 6 4.9617 -2.4071 -0.3077 9 7 5.9821 -1.9452 0.3816 10 14 5.2442 -3.6426 -1.6800 11 1 5.4623 -2.9204 -2.9591 12 1 6.4396 -4.4660 -1.3664 13 1 4.0553 -4.5235 -1.8055 14 6 1.7309 0.0857 2.4114 15 1 0.7743 0.5954 2.2965 16 6 2.8371 1.1201 2.6290 17 6 2.5360 1.9309 3.8910 18 6 2.4714 0.9918 5.0973 19 6 1.3654 -0.0426 4.8797 20 6 1.6667 -0.8537 3.6173 21 1 2.6233 -1.3634 3.7321 22 7 0.6047 -1.8469 3.4084 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 3.1242 1.4446 0.1112 28 1 1.7701 1.9234 -0.9403 29 1 1.5887 1.9874 0.8293 30 1 3.9966 -0.0633 0.8683 31 1 3.8150 -1.3981 2.0317 32 1 6.8813 -2.2464 0.1777 33 1 2.8828 1.7893 1.7698 34 1 3.7937 0.6103 2.7438 35 1 1.5795 2.4407 3.7758 36 1 3.3243 2.6676 4.0463 37 1 2.2565 1.5694 5.9963 38 1 3.4280 0.4820 5.2124 39 1 0.4088 0.4672 4.7644 40 1 1.3190 -0.7114 5.7391 41 1 0.5424 -2.4799 4.1917 42 1 -0.2818 -1.3972 3.2351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250485052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:53 Heat of formation + Delta-G solvation = -22.859093 kcal Electronic energy + Delta-G solvation = -19131.670670 eV Core-core repulsion = 16531.291262 eV Total energy + Delta-G solvation = -2600.379408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95724 -37.59553 -34.83971 -34.37561 -32.49239 -30.64121 -29.06307 -28.03046 -27.23714 -24.45395 -22.98271 -22.68907 -20.86568 -20.01372 -18.23666 -17.13423 -16.60096 -16.30130 -16.21077 -15.62317 -14.99399 -14.87586 -14.57900 -14.48482 -13.98719 -13.79539 -13.52329 -13.25517 -13.12645 -12.85399 -12.66077 -12.60823 -12.45064 -12.22485 -11.98042 -11.92114 -11.77764 -11.63400 -11.51665 -11.21491 -10.97760 -10.65188 -10.50548 -9.18629 -8.59854 -8.13434 -6.21553 1.38999 1.40620 1.52276 2.42892 3.17541 3.37042 3.69394 3.89798 4.03623 4.21586 4.23375 4.31519 4.34993 4.44609 4.51632 4.57402 4.62808 4.72740 4.82545 4.87071 4.90722 4.96546 5.06745 5.08701 5.19425 5.21585 5.24970 5.32525 5.36271 5.38222 5.42301 5.53269 5.58934 5.66752 5.75812 6.20669 6.53417 6.62633 6.90276 6.94953 7.00123 7.47317 8.96157 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.008103 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.803512 B = 3454.825018 C = 3712.543774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.073 3.927 3 C -0.174 4.174 4 N -0.513 5.513 5 C 0.222 3.778 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.099 3.901 15 H 0.085 0.915 16 C -0.170 4.170 17 C -0.108 4.108 18 C -0.115 4.115 19 C -0.140 4.140 20 C 0.109 3.891 21 H 0.034 0.966 22 N -0.833 5.833 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.073 0.927 30 H -0.030 1.030 31 H -0.011 1.011 32 H 0.261 0.739 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.339 0.661 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 7.777 6.833 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.036 4.036 3 C -0.232 4.232 4 N -0.234 5.234 5 C 0.095 3.905 6 C -0.552 4.552 7 H 0.073 0.927 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.786 3.214 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.193 1.193 14 C -0.010 4.010 15 H 0.103 0.897 16 C -0.210 4.210 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.180 4.180 20 C -0.003 4.003 21 H 0.053 0.947 22 N -0.362 5.362 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.092 0.908 30 H -0.012 1.012 31 H 0.007 0.993 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.152 0.848 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.427 7.031 6.222 14.789 hybrid contribution 1.107 0.300 0.114 1.152 sum -10.321 7.331 6.336 14.156 Atomic orbital electron populations 1.21702 0.93044 1.01698 1.01640 1.21660 0.96172 0.91926 0.93870 1.22661 1.00011 0.98382 1.02184 1.62234 1.16710 1.43512 1.00979 1.19181 0.84088 0.92969 0.94216 1.21551 0.92255 1.24534 1.16892 0.92686 1.25833 0.95919 0.98753 0.99235 1.70095 0.99265 1.45920 1.42403 0.85505 0.77603 0.78992 0.79251 1.19876 1.20908 1.19261 1.21649 0.97540 0.91515 0.90295 0.89703 1.22788 0.99095 0.99094 0.99982 1.21475 1.02092 0.97426 0.93639 1.21481 0.98282 0.97198 0.98401 1.22337 0.99513 0.98344 0.97768 1.21259 0.94454 0.91608 0.93027 0.94732 1.58507 1.08552 1.21535 1.47591 0.92057 0.91479 0.93072 0.92748 0.94942 0.91869 0.90829 1.01216 0.99278 0.93070 0.90239 0.95130 0.90467 0.91978 0.89994 0.94005 0.90476 0.91359 0.84829 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.64 9.22 71.98 0.66 -2.98 16 2 C 0.07 2.78 2.75 44.92 0.12 2.91 16 3 C -0.17 -5.93 7.28 71.98 0.52 -5.41 16 4 N -0.51 -21.98 4.16 -850.41 -3.54 -25.52 16 5 C 0.22 12.03 3.23 85.56 0.28 12.31 16 6 C -0.51 -30.29 8.33 25.60 0.21 -30.08 16 7 H 0.05 3.24 7.21 -2.91 -0.02 3.22 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 10 Si 0.96 46.30 29.54 68.60 2.03 48.32 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 C 0.10 3.42 1.16 44.91 0.05 3.47 16 15 H 0.09 2.55 5.67 -2.39 -0.01 2.54 16 16 C -0.17 -5.93 3.61 30.60 0.11 -5.81 16 17 C -0.11 -2.80 5.92 30.60 0.18 -2.61 16 18 C -0.12 -2.82 5.92 30.59 0.18 -2.64 16 19 C -0.14 -3.34 5.49 30.61 0.17 -3.17 16 20 C 0.11 3.56 2.75 44.93 0.12 3.68 16 21 H 0.03 1.45 7.08 -2.39 -0.02 1.43 16 22 N -0.83 -24.98 9.09 -168.62 -1.53 -26.51 16 23 H 0.06 1.58 6.38 -2.39 -0.02 1.57 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 2.45 6.61 -2.39 -0.02 2.43 16 27 H 0.03 1.31 5.52 -2.39 -0.01 1.29 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 2.17 5.80 -2.38 -0.01 2.15 16 30 H -0.03 -1.73 5.38 -2.39 -0.01 -1.74 16 31 H -0.01 -0.66 6.68 -2.39 -0.02 -0.68 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 33 H 0.08 2.78 3.84 -2.38 -0.01 2.78 16 34 H 0.03 1.32 6.43 -2.39 -0.02 1.30 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.34 8.78 9.04 -89.69 -0.81 7.97 16 42 H 0.34 8.63 8.98 -89.70 -0.81 7.83 16 Total: -1.00 -67.07 304.71 -0.28 -67.35 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.60 Total: 24.16 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 3.08 Total: -29.89 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -4.78 Total: -109.95 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -67.07 -0.28 -67.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250485052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.492 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds