Wall clock time and date at job start Mon Mar 30 2020 03:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47196 * 2 1 4 4 N 1.46904 * 109.47145 * 119.99565 * 2 1 3 5 5 C 1.46952 * 111.00083 * 298.80267 * 4 2 1 6 6 C 1.53049 * 109.36652 * 176.81116 * 5 4 2 7 7 C 1.52997 * 109.49073 * 178.36488 * 6 5 4 8 8 C 1.52998 * 109.49068 * 298.41065 * 6 5 4 9 9 N 1.46960 * 109.36611 * 58.39780 * 6 5 4 10 10 C 1.46902 * 111.00277 * 176.81642 * 9 6 5 11 11 C 1.46955 * 110.89812 * 300.69323 * 9 6 5 12 12 C 1.46950 * 111.00206 * 174.99960 * 4 2 1 13 13 H 1.08994 * 109.49028 * 63.19770 * 12 4 2 14 14 C 1.50707 * 109.48799 * 303.15680 * 12 4 2 15 15 H 1.08000 * 120.00140 * 354.45269 * 14 12 4 16 16 C 1.37878 * 119.99771 * 174.44860 * 14 12 4 17 17 N 1.31515 * 119.99589 * 161.99094 * 16 14 12 18 18 Si 1.86798 * 120.00428 * 341.99425 * 16 14 12 19 19 H 1.48498 * 109.47235 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47146 * 59.99690 * 18 16 14 21 21 H 1.48495 * 109.46988 * 299.99892 * 18 16 14 22 22 H 1.09006 * 109.46794 * 300.00243 * 1 2 3 23 23 H 1.08994 * 109.47342 * 60.00335 * 1 2 3 24 24 H 1.08997 * 109.47160 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46982 * 239.99443 * 2 1 3 26 26 H 1.08997 * 109.47196 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46887 * 299.99879 * 3 2 1 28 28 H 1.08994 * 109.47610 * 59.99828 * 3 2 1 29 29 H 1.09008 * 109.48769 * 296.77420 * 5 4 2 30 30 H 1.09003 * 109.49242 * 56.81950 * 5 4 2 31 31 H 1.08998 * 109.47118 * 60.00027 * 7 6 5 32 32 H 1.09003 * 109.47056 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47127 * 299.99577 * 7 6 5 34 34 H 1.08998 * 109.47056 * 59.99617 * 8 6 5 35 35 H 1.08997 * 109.47594 * 180.02562 * 8 6 5 36 36 H 1.09007 * 109.46904 * 300.00103 * 8 6 5 37 37 H 1.08996 * 109.47167 * 59.99481 * 10 9 6 38 38 H 1.08994 * 109.46780 * 180.02562 * 10 9 6 39 39 H 1.09000 * 109.46387 * 299.99923 * 10 9 6 40 40 H 1.08996 * 109.47364 * 299.33129 * 11 9 6 41 41 H 1.09000 * 109.50930 * 179.26517 * 11 9 6 42 42 H 0.97002 * 120.00573 * 354.56298 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5721 -0.0096 2.4214 6 6 2.0344 -0.8041 3.6451 7 6 1.6051 -0.0744 4.9195 8 6 1.4032 -2.1975 3.6175 9 7 3.4986 -0.9281 3.6208 10 6 3.9883 -1.6206 4.8203 11 6 3.9466 -1.6107 2.3990 12 6 3.4837 -0.8165 1.1752 13 1 3.9332 0.1763 1.1947 14 6 3.9067 -1.5352 -0.0801 15 1 3.1608 -1.9457 -0.7447 16 6 5.2458 -1.6687 -0.3801 17 7 5.6374 -2.5725 -1.2516 18 14 6.5037 -0.5661 0.4513 19 1 7.8629 -0.9081 -0.0395 20 1 6.4436 -0.7674 1.9214 21 1 6.2047 0.8532 0.1334 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.9998 0.9924 2.4555 30 1 0.4842 0.0591 2.4219 31 1 0.5193 0.0192 4.9363 32 1 1.9342 -0.6407 5.7908 33 1 2.0557 0.9179 4.9393 34 1 1.7099 -2.7173 2.7098 35 1 1.7323 -2.7629 4.4893 36 1 0.3172 -2.1048 3.6337 37 1 3.5536 -2.6191 4.8663 38 1 5.0746 -1.6984 4.7768 39 1 3.6999 -1.0576 5.7079 40 1 3.5192 -2.6128 2.3650 41 1 5.0345 -1.6788 2.3981 42 1 4.9957 -3.1972 -1.6241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250486162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:32 Heat of formation + Delta-G solvation = 15.143507 kcal Electronic energy + Delta-G solvation = -19564.889373 eV Core-core repulsion = 16966.157881 eV Total energy + Delta-G solvation = -2598.731492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.64426 -36.41727 -33.47496 -31.85244 -31.09533 -27.76239 -27.21877 -26.55978 -26.22547 -23.82383 -23.09544 -20.68842 -19.16955 -17.68696 -17.19764 -15.57867 -15.43072 -14.42547 -14.12837 -13.90299 -13.68643 -13.49311 -13.32120 -12.83081 -12.74274 -12.30071 -11.92390 -11.67336 -11.60793 -11.55835 -11.28442 -11.20486 -11.04220 -10.78965 -10.64606 -10.53579 -10.34423 -10.09777 -9.95387 -9.79392 -9.46505 -8.72284 -8.29698 -7.65610 -7.19195 -6.44193 -4.04985 3.41539 3.46414 3.63266 4.50456 4.50855 4.77918 5.22083 5.24769 5.43649 5.51890 5.59876 5.69223 5.77713 5.83416 5.86316 5.95764 5.99696 6.04674 6.08408 6.16320 6.19265 6.24263 6.28269 6.33465 6.37123 6.42599 6.47398 6.55576 6.56998 6.70985 6.86936 6.96285 7.07123 7.29584 7.62465 7.71464 7.88809 8.12499 8.36872 8.48225 8.99510 9.61710 10.94184 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.012375 C = 0.009060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.694578 B = 2262.013857 C = 3089.730268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 C -0.179 4.179 4 N -0.519 5.519 5 C 0.063 3.937 6 C 0.109 3.891 7 C -0.138 4.138 8 C -0.168 4.168 9 N -0.540 5.540 10 C 0.021 3.979 11 C 0.051 3.949 12 C 0.198 3.802 13 H 0.003 0.997 14 C -0.588 4.588 15 H 0.065 0.935 16 C 0.035 3.965 17 N -0.904 5.904 18 Si 1.034 2.966 19 H -0.287 1.287 20 H -0.271 1.271 21 H -0.285 1.285 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.023 0.977 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 4.826 9.376 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 C -0.238 4.238 4 N -0.243 5.243 5 C -0.066 4.066 6 C 0.019 3.981 7 C -0.196 4.196 8 C -0.227 4.227 9 N -0.264 5.264 10 C -0.128 4.128 11 C -0.076 4.076 12 C 0.090 3.910 13 H 0.021 0.979 14 C -0.626 4.626 15 H 0.083 0.917 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.863 3.137 19 H -0.213 1.213 20 H -0.198 1.198 21 H -0.211 1.211 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.163 5.188 9.389 12.372 hybrid contribution -1.582 -0.417 0.029 1.636 sum -7.745 4.771 9.418 13.094 Atomic orbital electron populations 1.21889 0.96306 1.01445 1.00331 1.21545 0.93216 0.92103 0.95567 1.22393 1.02542 0.98514 1.00356 1.62304 1.13713 1.48476 0.99759 1.22150 0.98802 0.95445 0.90201 1.21020 0.87788 0.94664 0.94675 1.21875 1.00326 1.00635 0.96738 1.22310 1.00199 0.98004 1.02180 1.62508 1.09264 1.51669 1.02973 1.22390 1.00166 0.96529 0.93699 1.22923 0.99918 0.96715 0.88041 1.19562 0.83164 0.94377 0.93858 0.97939 1.21958 0.93976 1.39790 1.06907 0.91659 1.25626 0.97732 0.97330 0.96368 1.70834 1.37840 1.15724 1.29338 0.84207 0.76410 0.76453 0.76645 1.21320 1.19787 1.21118 0.93491 0.93255 0.92529 0.88684 0.91834 0.93376 0.93614 0.94905 0.91574 0.92745 0.92703 0.92284 0.90452 0.93854 0.93155 0.95843 0.92110 0.92010 0.94421 0.90845 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.00 37.16 0.33 -1.90 16 2 C 0.08 1.62 2.71 -67.71 -0.18 1.44 16 3 C -0.18 -3.25 8.49 37.16 0.32 -2.93 16 4 N -0.52 -10.71 3.83 -219.95 -0.84 -11.55 16 5 C 0.06 1.12 3.52 -3.77 -0.01 1.11 16 6 C 0.11 1.83 0.68 -131.55 -0.09 1.74 16 7 C -0.14 -1.88 8.14 37.16 0.30 -1.58 16 8 C -0.17 -2.78 7.65 37.16 0.28 -2.49 16 9 N -0.54 -10.27 4.73 -227.02 -1.07 -11.34 16 10 C 0.02 0.33 8.81 60.07 0.53 0.86 16 11 C 0.05 1.15 4.21 -3.77 -0.02 1.13 16 12 C 0.20 4.68 1.16 -68.81 -0.08 4.60 16 13 H 0.00 0.08 5.25 -51.93 -0.27 -0.19 16 14 C -0.59 -15.96 7.99 -34.44 -0.28 -16.24 16 15 H 0.07 1.93 6.95 -52.49 -0.37 1.56 16 16 C 0.04 0.99 5.33 -17.82 -0.10 0.90 16 17 N -0.90 -27.22 13.69 55.43 0.76 -26.47 16 18 Si 1.03 25.21 26.40 -169.99 -4.49 20.73 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.23 5.59 56.52 0.32 -5.92 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.10 2.11 6.23 -51.93 -0.32 1.78 16 26 H 0.06 1.31 6.59 -51.93 -0.34 0.97 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.76 6.46 -51.93 -0.34 0.43 16 29 H 0.03 0.61 6.47 -51.92 -0.34 0.28 16 30 H 0.07 1.07 6.17 -51.93 -0.32 0.75 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.69 6.37 -51.93 -0.33 0.36 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.51 5.95 -51.93 -0.31 1.20 16 35 H 0.04 0.66 6.48 -51.93 -0.34 0.32 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.02 0.37 6.39 -51.93 -0.33 0.03 16 38 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 39 H 0.06 0.85 6.25 -51.93 -0.32 0.53 16 40 H 0.04 0.88 6.35 -51.93 -0.33 0.55 16 41 H 0.07 1.74 4.83 -51.93 -0.25 1.49 16 42 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 LS Contribution 294.94 15.07 4.44 4.44 Total: -1.00 -28.52 294.94 -7.22 -35.74 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.03 Total: 1.80 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 1.01 Total: -13.36 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -1.16 Total: -49.36 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.49 Total: 20.73 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.52 -7.22 -35.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250486162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.882 kcal (2) G-P(sol) polarization free energy of solvation -28.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds