Wall clock time and date at job start Mon Mar 30 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 H 1.09001 * 109.46684 * 324.99569 * 3 2 1 5 5 C 1.50702 * 109.47055 * 204.99904 * 3 2 1 6 6 H 1.08000 * 119.99617 * 240.00196 * 5 3 2 7 7 C 1.37872 * 120.00105 * 59.99890 * 5 3 2 8 8 N 1.31523 * 120.00091 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47180 * 59.99709 * 9 7 5 11 11 H 1.48502 * 109.47049 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46854 * 299.99566 * 9 7 5 13 13 N 1.46901 * 109.47279 * 84.99734 * 3 2 1 14 14 C 1.46848 * 110.99747 * 327.06430 * 13 3 2 15 15 C 1.53041 * 109.51966 * 174.16298 * 14 13 3 16 16 C 1.53115 * 109.27803 * 59.18098 * 15 14 13 17 17 C 1.53116 * 109.15924 * 302.34256 * 16 15 14 18 18 H 1.09005 * 109.50491 * 177.60307 * 17 16 15 19 19 C 1.53002 * 109.50576 * 297.67548 * 17 16 15 20 20 C 1.46847 * 110.99841 * 202.85703 * 13 3 2 21 21 H 1.08997 * 109.46303 * 65.81913 * 20 13 3 22 22 C 1.53000 * 109.46146 * 305.85545 * 20 13 3 23 23 N 1.46891 * 109.47576 * 73.22243 * 22 20 13 24 24 H 1.08991 * 109.47350 * 188.83350 * 1 2 3 25 25 H 1.09000 * 109.47249 * 308.83484 * 1 2 3 26 26 H 1.09003 * 109.47071 * 68.82995 * 1 2 3 27 27 H 1.08997 * 109.47491 * 239.99734 * 2 1 3 28 28 H 1.09003 * 109.47214 * 119.99525 * 2 1 3 29 29 H 0.96997 * 119.99863 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46475 * 294.17324 * 14 13 3 31 31 H 1.08994 * 109.46667 * 54.14528 * 14 13 3 32 32 H 1.09002 * 109.50016 * 179.11927 * 15 14 13 33 33 H 1.08999 * 109.50455 * 299.19445 * 15 14 13 34 34 H 1.08999 * 109.52531 * 62.25200 * 16 15 14 35 35 H 1.09000 * 109.51924 * 182.37685 * 16 15 14 36 36 H 1.08996 * 109.46923 * 59.99826 * 19 17 16 37 37 H 1.09000 * 109.47335 * 179.97438 * 19 17 16 38 38 H 1.09007 * 109.47029 * 300.00446 * 19 17 16 39 39 H 1.09001 * 109.47046 * 193.22448 * 22 20 13 40 40 H 1.09001 * 109.46986 * 313.21839 * 22 20 13 41 41 H 1.00902 * 110.99970 * 59.95645 * 23 22 20 42 42 H 1.00899 * 111.00391 * 183.91257 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3675 2.0656 -0.5895 5 6 3.4216 1.4868 -0.6005 6 1 4.2531 1.8514 -0.0156 7 6 3.6239 1.0620 -1.8964 8 7 2.6114 0.6175 -2.6084 9 14 5.3366 1.1163 -2.6404 10 1 6.2524 0.2669 -1.8372 11 1 5.2867 0.6084 -4.0350 12 1 5.8321 2.5162 -2.6403 13 7 2.0894 1.9445 1.3797 14 6 1.0139 1.3602 2.1910 15 6 1.1828 1.7900 3.6501 16 6 1.1390 3.3182 3.7351 17 6 2.2381 3.9028 2.8436 18 1 2.1849 4.9913 2.8667 19 6 3.6065 3.4475 3.3546 20 6 2.0386 3.4118 1.4080 21 1 1.0695 3.7488 1.0402 22 6 3.1464 3.9774 0.5171 23 7 2.7898 3.7784 -0.8939 24 1 -0.3633 -1.0154 0.1578 25 1 -0.3634 0.6444 0.8005 26 1 -0.3633 0.3711 -0.9583 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.7539 0.3183 -3.5200 30 1 0.0495 1.7069 1.8197 31 1 1.0587 0.2732 2.1252 32 1 0.3754 1.3690 4.2493 33 1 2.1406 1.4312 4.0266 34 1 0.1665 3.6743 3.3954 35 1 1.3012 3.6303 4.7668 36 1 3.6597 2.3591 3.3301 37 1 4.3884 3.8636 2.7193 38 1 3.7461 3.7951 4.3783 39 1 3.2637 5.0428 0.7154 40 1 4.0831 3.4628 0.7312 41 1 1.9238 4.2456 -1.1174 42 1 3.5340 4.0859 -1.5019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251295426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:53 Heat of formation + Delta-G solvation = 28.188666 kcal Electronic energy + Delta-G solvation = -19654.269788 eV Core-core repulsion = 17056.103977 eV Total energy + Delta-G solvation = -2598.165811 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.31130 -35.13459 -34.03532 -31.84449 -30.38307 -30.11454 -26.84390 -26.21068 -24.42760 -22.69916 -21.88347 -20.62257 -19.19297 -18.04073 -16.25230 -15.34819 -14.80953 -14.37884 -14.18400 -13.95735 -13.79883 -13.19529 -13.04710 -12.53315 -12.21459 -11.96661 -11.76366 -11.61984 -11.34977 -11.11454 -10.85113 -10.80930 -10.66342 -10.47799 -10.26001 -10.24376 -9.93012 -9.85253 -9.37067 -9.27857 -8.97613 -8.64550 -7.92156 -7.08937 -6.84600 -5.55868 -3.39472 3.48217 3.54524 3.56799 4.70358 5.00774 5.19090 5.23575 5.40443 5.59307 5.76105 5.80348 5.89876 5.93912 6.05901 6.10598 6.17719 6.21213 6.29553 6.32558 6.37862 6.40464 6.50225 6.56667 6.59404 6.68964 6.70917 6.75618 6.95459 7.01803 7.08173 7.38359 7.43014 7.81264 8.03147 8.22114 8.28199 8.51643 8.61097 8.68487 8.98049 9.41661 10.04788 11.53493 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.010452 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.657566 B = 2678.260313 C = 3301.400181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.125 4.125 3 C 0.229 3.771 4 H 0.023 0.977 5 C -0.400 4.400 6 H 0.049 0.951 7 C 0.051 3.949 8 N -0.907 5.907 9 Si 0.876 3.124 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.287 1.287 13 N -0.522 5.522 14 C 0.047 3.953 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.085 4.085 18 H 0.056 0.944 19 C -0.135 4.135 20 C 0.104 3.896 21 H 0.020 0.980 22 C 0.082 3.918 23 N -0.786 5.786 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.094 0.906 28 H 0.031 0.969 29 H 0.248 0.752 30 H 0.022 0.978 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.035 0.965 39 H -0.006 1.006 40 H 0.085 0.915 41 H 0.306 0.694 42 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 5.382 9.281 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.164 4.164 3 C 0.124 3.876 4 H 0.041 0.959 5 C -0.440 4.440 6 H 0.067 0.933 7 C -0.146 4.146 8 N -0.551 5.551 9 Si 0.707 3.293 10 H -0.214 1.214 11 H -0.223 1.223 12 H -0.213 1.213 13 N -0.248 5.248 14 C -0.081 4.081 15 C -0.158 4.158 16 C -0.149 4.149 17 C -0.104 4.104 18 H 0.075 0.925 19 C -0.193 4.193 20 C -0.006 4.006 21 H 0.038 0.962 22 C -0.049 4.049 23 N -0.314 5.314 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.012 0.988 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.060 4.399 9.469 10.642 hybrid contribution 0.215 1.397 -1.020 1.743 sum -1.846 5.796 8.449 10.411 Atomic orbital electron populations 1.22270 0.99629 0.98933 1.00850 1.21882 0.91777 1.01165 1.01537 1.19335 0.97181 0.89864 0.81210 0.95902 1.20691 0.92552 1.35041 0.95758 0.93321 1.24592 0.94874 0.97970 0.97114 1.69880 1.29082 1.46886 1.09215 0.86959 0.86821 0.77494 0.78071 1.21387 1.22303 1.21313 1.62189 1.43227 1.03624 1.15754 1.22452 0.92977 1.00542 0.92148 1.21700 1.01373 0.95143 0.97624 1.21563 0.98166 0.96469 0.98705 1.21171 0.95745 0.98133 0.95352 0.92545 1.21744 0.95818 1.03299 0.98400 1.21404 0.96264 0.90299 0.92597 0.96221 1.21732 0.99690 0.94168 0.89351 1.59459 1.05686 1.64121 1.02095 0.95482 0.93441 0.93615 0.88732 0.95046 0.94158 0.95995 0.90165 0.93066 0.91318 0.93070 0.92884 0.90696 0.93145 0.94632 0.98784 0.89723 0.88175 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.12 37.16 0.34 -2.97 16 2 C -0.13 -2.95 4.79 -26.73 -0.13 -3.08 16 3 C 0.23 5.42 1.38 -68.86 -0.09 5.33 16 4 H 0.02 0.61 6.58 -51.93 -0.34 0.27 16 5 C -0.40 -10.25 5.12 -34.44 -0.18 -10.43 16 6 H 0.05 1.28 5.98 -52.49 -0.31 0.97 16 7 C 0.05 1.35 5.02 -17.82 -0.09 1.26 16 8 N -0.91 -25.50 11.46 55.43 0.64 -24.87 16 9 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.03 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.52 -10.55 3.68 -220.14 -0.81 -11.36 16 14 C 0.05 0.85 3.79 -3.83 -0.01 0.83 16 15 C -0.12 -1.82 5.74 -26.65 -0.15 -1.97 16 16 C -0.11 -1.57 5.51 -26.61 -0.15 -1.72 16 17 C -0.08 -1.30 2.70 -90.54 -0.24 -1.54 16 18 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 19 C -0.14 -2.04 8.40 37.16 0.31 -1.73 16 20 C 0.10 1.90 1.74 -67.72 -0.12 1.78 16 21 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 22 C 0.08 1.52 4.70 -3.83 -0.02 1.50 16 23 N -0.79 -15.73 4.78 -10.37 -0.05 -15.78 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.91 4.39 -51.93 -0.23 0.68 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.09 2.55 5.85 -51.93 -0.30 2.25 16 28 H 0.03 0.72 6.53 -51.93 -0.34 0.38 16 29 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.02 0.41 6.21 -51.93 -0.32 0.09 16 31 H 0.08 1.52 5.10 -51.93 -0.26 1.25 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.06 6.59 -51.93 -0.34 0.71 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.26 6.01 -51.93 -0.31 0.95 16 37 H 0.05 0.77 6.75 -51.93 -0.35 0.42 16 38 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 39 H -0.01 -0.10 8.08 -51.93 -0.42 -0.51 16 40 H 0.08 1.74 5.41 -51.93 -0.28 1.45 16 41 H 0.31 5.77 9.01 -39.29 -0.35 5.41 16 42 H 0.33 6.41 9.08 -39.29 -0.36 6.06 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -26.92 293.76 -8.40 -35.31 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.04 Total: 8.61 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.53 Total: -12.73 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.22 Total: -52.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.92 -8.40 -35.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251295426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.503 kcal (2) G-P(sol) polarization free energy of solvation -26.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds