Wall clock time and date at job start Mon Mar 30 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 H 1.09001 * 109.46684 * 324.99569 * 3 2 1 5 5 C 1.50702 * 109.47055 * 204.99904 * 3 2 1 6 6 H 1.08000 * 119.99617 * 240.00196 * 5 3 2 7 7 C 1.37872 * 120.00105 * 59.99890 * 5 3 2 8 8 N 1.31523 * 120.00091 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47180 * 59.99709 * 9 7 5 11 11 H 1.48502 * 109.47049 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46854 * 299.99566 * 9 7 5 13 13 N 1.46901 * 109.47279 * 84.99734 * 3 2 1 14 14 C 1.46848 * 110.99747 * 327.06430 * 13 3 2 15 15 C 1.53041 * 109.51966 * 174.16298 * 14 13 3 16 16 C 1.53115 * 109.27803 * 59.18098 * 15 14 13 17 17 C 1.53116 * 109.15924 * 302.34256 * 16 15 14 18 18 H 1.09005 * 109.50491 * 177.60307 * 17 16 15 19 19 C 1.53002 * 109.50576 * 297.67548 * 17 16 15 20 20 C 1.46847 * 110.99841 * 202.85703 * 13 3 2 21 21 H 1.08997 * 109.46303 * 65.81913 * 20 13 3 22 22 C 1.53000 * 109.46146 * 305.85545 * 20 13 3 23 23 N 1.46891 * 109.47576 * 73.22243 * 22 20 13 24 24 H 1.08991 * 109.47350 * 188.83350 * 1 2 3 25 25 H 1.09000 * 109.47249 * 308.83484 * 1 2 3 26 26 H 1.09003 * 109.47071 * 68.82995 * 1 2 3 27 27 H 1.08997 * 109.47491 * 239.99734 * 2 1 3 28 28 H 1.09003 * 109.47214 * 119.99525 * 2 1 3 29 29 H 0.96997 * 119.99863 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46475 * 294.17324 * 14 13 3 31 31 H 1.08994 * 109.46667 * 54.14528 * 14 13 3 32 32 H 1.09002 * 109.50016 * 179.11927 * 15 14 13 33 33 H 1.08999 * 109.50455 * 299.19445 * 15 14 13 34 34 H 1.08999 * 109.52531 * 62.25200 * 16 15 14 35 35 H 1.09000 * 109.51924 * 182.37685 * 16 15 14 36 36 H 1.08996 * 109.46923 * 59.99826 * 19 17 16 37 37 H 1.09000 * 109.47335 * 179.97438 * 19 17 16 38 38 H 1.09007 * 109.47029 * 300.00446 * 19 17 16 39 39 H 1.09001 * 109.47046 * 193.22448 * 22 20 13 40 40 H 1.09001 * 109.46986 * 313.21839 * 22 20 13 41 41 H 1.00902 * 110.99970 * 59.95645 * 23 22 20 42 42 H 1.00899 * 111.00391 * 183.91257 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3675 2.0656 -0.5895 5 6 3.4216 1.4868 -0.6005 6 1 4.2531 1.8514 -0.0156 7 6 3.6239 1.0620 -1.8964 8 7 2.6114 0.6175 -2.6084 9 14 5.3366 1.1163 -2.6404 10 1 6.2524 0.2669 -1.8372 11 1 5.2867 0.6084 -4.0350 12 1 5.8321 2.5162 -2.6403 13 7 2.0894 1.9445 1.3797 14 6 1.0139 1.3602 2.1910 15 6 1.1828 1.7900 3.6501 16 6 1.1390 3.3182 3.7351 17 6 2.2381 3.9028 2.8436 18 1 2.1849 4.9913 2.8667 19 6 3.6065 3.4475 3.3546 20 6 2.0386 3.4118 1.4080 21 1 1.0695 3.7488 1.0402 22 6 3.1464 3.9774 0.5171 23 7 2.7898 3.7784 -0.8939 24 1 -0.3633 -1.0154 0.1578 25 1 -0.3634 0.6444 0.8005 26 1 -0.3633 0.3711 -0.9583 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.7539 0.3183 -3.5200 30 1 0.0495 1.7069 1.8197 31 1 1.0587 0.2732 2.1252 32 1 0.3754 1.3690 4.2493 33 1 2.1406 1.4312 4.0266 34 1 0.1665 3.6743 3.3954 35 1 1.3012 3.6303 4.7668 36 1 3.6597 2.3591 3.3301 37 1 4.3884 3.8636 2.7193 38 1 3.7461 3.7951 4.3783 39 1 3.2637 5.0428 0.7154 40 1 4.0831 3.4628 0.7312 41 1 1.9238 4.2456 -1.1174 42 1 3.5340 4.0859 -1.5019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251295426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:53 Heat of formation + Delta-G solvation = 11.309509 kcal Electronic energy + Delta-G solvation = -19655.001723 eV Core-core repulsion = 17056.103977 eV Total energy + Delta-G solvation = -2598.897746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78490 -36.74288 -35.55672 -33.73838 -31.89967 -31.67167 -28.67583 -27.49073 -26.00729 -24.46756 -23.40951 -22.04254 -20.99177 -19.40204 -18.13201 -17.01419 -16.40525 -15.95716 -15.79483 -15.45408 -15.34073 -14.75757 -14.46784 -14.15312 -13.79219 -13.53651 -13.33400 -13.04581 -12.92758 -12.77550 -12.61767 -12.39381 -12.35918 -12.18855 -11.84988 -11.61689 -11.50616 -11.37321 -11.09449 -10.84888 -10.58434 -10.51500 -9.96486 -8.69311 -8.51662 -7.63670 -5.49280 1.50362 1.53943 1.57005 2.70078 3.50245 3.66417 3.88192 3.99511 4.13677 4.32694 4.42326 4.53366 4.59501 4.63254 4.67612 4.78031 4.80532 4.85006 4.91358 4.96677 5.02262 5.10398 5.17025 5.22597 5.30086 5.36613 5.38190 5.44252 5.52047 5.60409 5.63600 5.78590 5.90376 6.13726 6.17717 6.73235 6.74584 6.87746 6.98207 7.11591 7.38097 7.96858 9.44105 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.010452 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.657566 B = 2678.260313 C = 3301.400181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.239 3.761 4 H -0.005 1.005 5 C -0.386 4.386 6 H 0.040 0.960 7 C 0.011 3.989 8 N -0.932 5.932 9 Si 0.922 3.078 10 H -0.291 1.291 11 H -0.306 1.306 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.046 3.954 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.081 4.081 18 H 0.074 0.926 19 C -0.130 4.130 20 C 0.103 3.897 21 H 0.008 0.992 22 C 0.087 3.913 23 N -0.805 5.805 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.240 0.760 30 H 0.017 0.983 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.064 0.936 41 H 0.313 0.687 42 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 6.420 11.520 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.133 3.867 4 H 0.012 0.988 5 C -0.426 4.426 6 H 0.058 0.942 7 C -0.182 4.182 8 N -0.578 5.578 9 Si 0.752 3.248 10 H -0.218 1.218 11 H -0.233 1.233 12 H -0.203 1.203 13 N -0.253 5.253 14 C -0.082 4.082 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.101 4.101 18 H 0.092 0.908 19 C -0.187 4.187 20 C -0.006 4.006 21 H 0.025 0.975 22 C -0.044 4.044 23 N -0.334 5.334 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.247 5.454 11.734 13.133 hybrid contribution 0.272 1.090 -1.676 2.017 sum -1.975 6.544 10.059 12.161 Atomic orbital electron populations 1.22122 0.97460 1.00455 1.00375 1.21744 0.93764 1.00713 0.99809 1.19031 0.95294 0.89504 0.82891 0.98763 1.20829 0.93216 1.33205 0.95383 0.94193 1.25027 0.96911 0.98523 0.97726 1.70022 1.30399 1.48433 1.08950 0.86214 0.84135 0.77671 0.76735 1.21803 1.23282 1.20265 1.62110 1.44408 1.05091 1.13721 1.22474 0.91923 0.99835 0.93981 1.21655 1.02192 0.96155 0.95214 1.21557 0.97691 0.95404 0.99872 1.21179 0.96464 0.99172 0.93242 0.90779 1.21678 0.95390 1.01901 0.99766 1.21498 0.95373 0.88931 0.94800 0.97459 1.21677 0.98813 0.95313 0.88598 1.59320 1.06019 1.64939 1.03081 0.93568 0.91714 0.95580 0.92329 0.94722 0.95021 0.96495 0.91224 0.90757 0.91528 0.92822 0.90239 0.92693 0.93917 0.92115 0.96403 0.91750 0.87486 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.05 9.12 71.98 0.66 -5.40 16 2 C -0.12 -5.80 4.79 30.59 0.15 -5.65 16 3 C 0.24 11.41 1.38 44.17 0.06 11.47 16 4 H -0.01 -0.28 6.58 -2.39 -0.02 -0.29 16 5 C -0.39 -20.00 5.12 25.60 0.13 -19.87 16 6 H 0.04 2.12 5.98 -2.91 -0.02 2.10 16 7 C 0.01 0.62 5.02 84.65 0.43 1.05 16 8 N -0.93 -53.82 11.46 21.45 0.25 -53.57 16 9 Si 0.92 44.56 29.54 68.60 2.03 46.58 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 11 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.53 -20.94 3.68 -850.39 -3.13 -24.07 16 14 C 0.05 1.58 3.79 86.33 0.33 1.91 16 15 C -0.11 -3.08 5.74 30.65 0.18 -2.91 16 16 C -0.11 -2.62 5.51 30.67 0.17 -2.45 16 17 C -0.08 -2.24 2.70 -10.74 -0.03 -2.27 16 18 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 19 C -0.13 -3.56 8.40 71.98 0.60 -2.95 16 20 C 0.10 3.64 1.74 44.94 0.08 3.72 16 21 H 0.01 0.29 8.11 -2.39 -0.02 0.27 16 22 C 0.09 3.15 4.70 86.30 0.41 3.55 16 23 N -0.81 -32.31 4.78 -186.73 -0.89 -33.21 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 2.42 4.39 -2.39 -0.01 2.41 16 26 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 3.24 5.85 -2.39 -0.01 3.23 16 28 H 0.03 1.59 6.53 -2.39 -0.02 1.57 16 29 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.02 0.61 6.21 -2.39 -0.01 0.60 16 31 H 0.07 2.54 5.10 -2.39 -0.01 2.52 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.85 6.59 -2.39 -0.02 1.83 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.73 6.01 -2.39 -0.01 1.71 16 37 H 0.04 1.21 6.75 -2.39 -0.02 1.20 16 38 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.02 0.57 8.08 -2.39 -0.02 0.55 16 40 H 0.06 2.61 5.41 -2.39 -0.01 2.59 16 41 H 0.31 11.84 9.01 -89.69 -0.81 11.03 16 42 H 0.33 12.85 9.08 -89.69 -0.81 12.04 16 Total: -1.00 -58.05 293.76 0.80 -57.25 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.61 Total: 26.82 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.15 Total: -19.81 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -3.78 Total: -110.85 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -58.05 0.80 -57.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251295426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.563 kcal (2) G-P(sol) polarization free energy of solvation -58.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds