Wall clock time and date at job start Mon Mar 30 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47018 * 2 1 4 4 H 1.08991 * 109.47072 * 304.59237 * 3 2 1 5 5 C 1.50697 * 109.47373 * 184.58694 * 3 2 1 6 6 H 1.08001 * 120.00386 * 265.98861 * 5 3 2 7 7 C 1.37879 * 119.99845 * 85.97511 * 5 3 2 8 8 N 1.31516 * 120.00129 * 184.85340 * 7 5 3 9 9 Si 1.86799 * 119.99832 * 4.85868 * 7 5 3 10 10 H 1.48497 * 109.47249 * 93.53934 * 9 7 5 11 11 H 1.48509 * 109.46802 * 213.53804 * 9 7 5 12 12 H 1.48501 * 109.47232 * 333.53245 * 9 7 5 13 13 N 1.46903 * 109.47082 * 64.59143 * 3 2 1 14 14 C 1.46840 * 111.00190 * 38.86161 * 13 3 2 15 15 C 1.53039 * 109.52453 * 174.16235 * 14 13 3 16 16 C 1.53119 * 109.28019 * 59.18088 * 15 14 13 17 17 C 1.53121 * 109.15930 * 302.34961 * 16 15 14 18 18 H 1.09004 * 109.50436 * 297.71010 * 17 16 15 19 19 C 1.52996 * 109.53653 * 177.61417 * 17 16 15 20 20 C 1.46849 * 110.99731 * 274.65275 * 13 3 2 21 21 H 1.09008 * 109.45373 * 65.83202 * 20 13 3 22 22 C 1.53003 * 109.46480 * 305.85606 * 20 13 3 23 23 N 1.46905 * 109.46912 * 79.71224 * 22 20 13 24 24 H 1.09000 * 109.46964 * 165.58162 * 1 2 3 25 25 H 1.09005 * 109.47233 * 285.57730 * 1 2 3 26 26 H 1.08994 * 109.47251 * 45.58310 * 1 2 3 27 27 H 1.08998 * 109.47109 * 239.99777 * 2 1 3 28 28 H 1.09005 * 109.47038 * 120.00036 * 2 1 3 29 29 H 0.97001 * 119.99816 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46552 * 54.15209 * 14 13 3 31 31 H 1.09003 * 109.45796 * 294.17442 * 14 13 3 32 32 H 1.09002 * 109.50164 * 299.23907 * 15 14 13 33 33 H 1.08993 * 109.50597 * 179.12426 * 15 14 13 34 34 H 1.08999 * 109.52348 * 182.44396 * 16 15 14 35 35 H 1.09001 * 109.52293 * 62.25033 * 16 15 14 36 36 H 1.09001 * 109.47424 * 300.17524 * 19 17 16 37 37 H 1.09002 * 109.47443 * 60.17020 * 19 17 16 38 38 H 1.09002 * 109.47458 * 180.17742 * 19 17 16 39 39 H 1.08995 * 109.47139 * 319.71553 * 22 20 13 40 40 H 1.08997 * 109.46899 * 199.71152 * 22 20 13 41 41 H 1.00901 * 110.99990 * 67.52724 * 23 22 20 42 42 H 1.00897 * 110.99627 * 191.48938 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6110 1.9795 -0.8459 5 6 3.5426 1.4441 -0.1136 6 1 4.1516 1.4852 0.7774 7 6 4.1401 1.3928 -1.3552 8 7 5.4483 1.2978 -1.4520 9 14 3.0916 1.4583 -2.8997 10 1 2.9856 2.8639 -3.3668 11 1 3.7203 0.6304 -3.9602 12 1 1.7355 0.9326 -2.6001 13 7 1.6429 2.1022 1.2510 14 6 1.7538 1.1817 2.3897 15 6 1.4740 1.9397 3.6894 16 6 0.0672 2.5415 3.6308 17 6 -0.0366 3.4584 2.4089 18 1 0.6721 4.2805 2.5094 19 6 -1.4570 4.0181 2.3085 20 6 0.2870 2.6564 1.1463 21 1 -0.4305 1.8428 1.0391 22 6 0.2040 3.5736 -0.0755 23 7 0.0412 2.7604 -1.2880 24 1 -0.3633 -0.9953 -0.2559 25 1 -0.3634 0.2760 0.9900 26 1 -0.3633 0.7192 -0.7340 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.8686 1.2621 -2.3254 30 1 2.7600 0.7640 2.4224 31 1 1.0293 0.3752 2.2764 32 1 2.2065 2.7378 3.8101 33 1 1.5410 1.2528 4.5330 34 1 -0.1200 3.1187 4.5363 35 1 -0.6683 1.7412 3.5492 36 1 -2.1655 3.1957 2.2093 37 1 -1.6870 4.5892 3.2080 38 1 -1.5306 4.6681 1.4366 39 1 1.1192 4.1606 -0.1520 40 1 -0.6494 4.2433 0.0302 41 1 -0.8572 2.3012 -1.2975 42 1 0.1706 3.3191 -2.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251295436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:56 Heat of formation + Delta-G solvation = 15.289762 kcal Electronic energy + Delta-G solvation = -19590.614362 eV Core-core repulsion = 16991.889212 eV Total energy + Delta-G solvation = -2598.725150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53965 -35.22711 -34.35532 -32.08117 -31.17057 -30.30740 -27.64563 -26.22604 -24.65478 -22.78003 -21.91502 -20.58157 -19.28107 -18.70692 -16.67988 -15.79692 -15.11334 -14.93007 -14.57191 -14.13014 -13.94211 -13.57314 -12.93405 -12.78475 -12.52076 -12.19630 -12.01955 -11.86821 -11.59777 -11.45488 -11.20605 -10.98970 -10.76587 -10.66462 -10.45653 -10.22959 -10.08437 -9.85844 -9.67668 -9.44081 -9.34050 -8.94171 -8.37123 -7.60076 -6.90438 -5.83658 -3.77284 3.45539 3.53792 3.66947 4.65085 4.73455 4.87260 5.06698 5.24990 5.30070 5.49098 5.55912 5.70606 5.78887 5.81826 5.86833 5.88063 6.02547 6.04050 6.13415 6.16849 6.23201 6.27505 6.31740 6.37398 6.42973 6.55431 6.65394 6.73993 6.82964 6.93516 6.99162 7.16215 7.32936 7.44220 7.64489 7.71677 8.11338 8.30248 8.53439 8.98281 9.27189 9.82505 11.30115 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.010067 C = 0.008901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.435621 B = 2780.833455 C = 3144.889549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.142 4.142 3 C 0.145 3.855 4 H 0.120 0.880 5 C -0.483 4.483 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.912 5.912 9 Si 0.872 3.128 10 H -0.285 1.285 11 H -0.302 1.302 12 H -0.242 1.242 13 N -0.510 5.510 14 C 0.058 3.942 15 C -0.119 4.119 16 C -0.109 4.109 17 C -0.088 4.088 18 H 0.075 0.925 19 C -0.147 4.147 20 C 0.077 3.923 21 H 0.049 0.951 22 C 0.062 3.938 23 N -0.832 5.832 24 H 0.027 0.973 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.258 0.742 30 H 0.075 0.925 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.029 0.971 41 H 0.332 0.668 42 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 3.454 5.211 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.181 4.181 3 C 0.038 3.962 4 H 0.137 0.863 5 C -0.522 4.522 6 H 0.085 0.915 7 C -0.137 4.137 8 N -0.552 5.552 9 Si 0.700 3.300 10 H -0.211 1.211 11 H -0.230 1.230 12 H -0.166 1.166 13 N -0.233 5.233 14 C -0.070 4.070 15 C -0.157 4.157 16 C -0.147 4.147 17 C -0.107 4.107 18 H 0.093 0.907 19 C -0.205 4.205 20 C -0.032 4.032 21 H 0.067 0.933 22 C -0.069 4.069 23 N -0.363 5.363 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.146 0.854 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.609 3.431 5.426 15.047 hybrid contribution -1.583 -0.167 -1.158 1.969 sum -15.192 3.264 4.268 16.114 Atomic orbital electron populations 1.22340 0.99124 0.99824 1.00610 1.22374 0.92566 1.02731 1.00462 1.20752 0.96018 0.88992 0.90450 0.86311 1.21056 0.89728 1.47834 0.93602 0.91533 1.24960 0.94636 0.95226 0.98841 1.69939 1.09182 1.52268 1.23846 0.86924 0.82449 0.77759 0.82821 1.21134 1.22973 1.16568 1.62316 1.20105 1.35999 1.04924 1.22033 1.01016 0.93691 0.90307 1.21645 0.96502 0.99986 0.97593 1.21567 0.97491 0.98412 0.97191 1.21186 0.96085 0.98342 0.95086 0.90676 1.21915 0.96877 1.00500 1.01191 1.21877 0.92897 0.96101 0.92323 0.93313 1.21991 1.00670 0.94516 0.89692 1.59108 1.37175 1.35318 1.04708 0.95435 0.93820 0.91331 0.93264 0.93702 0.93251 0.90681 0.95655 0.91498 0.92812 0.92808 0.92969 0.93249 0.93103 0.92591 0.89856 0.95267 0.85397 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.11 37.16 0.30 -2.60 16 2 C -0.14 -3.10 4.47 -26.73 -0.12 -3.22 16 3 C 0.14 3.35 1.17 -68.87 -0.08 3.27 16 4 H 0.12 2.66 1.60 -52.04 -0.08 2.58 16 5 C -0.48 -13.84 8.78 -34.44 -0.30 -14.14 16 6 H 0.07 2.12 7.70 -52.49 -0.40 1.72 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -28.86 13.96 55.43 0.77 -28.08 16 9 Si 0.87 21.84 26.37 -169.99 -4.48 17.36 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.24 -5.62 6.02 56.52 0.34 -5.27 16 13 N -0.51 -10.41 4.31 -220.14 -0.95 -11.35 16 14 C 0.06 1.10 4.02 -3.84 -0.02 1.09 16 15 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 16 C -0.11 -1.50 5.29 -26.61 -0.14 -1.64 16 17 C -0.09 -1.24 2.40 -90.54 -0.22 -1.46 16 18 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.15 -1.68 8.93 37.16 0.33 -1.35 16 20 C 0.08 1.28 1.25 -67.72 -0.08 1.19 16 21 H 0.05 0.81 4.37 -51.92 -0.23 0.59 16 22 C 0.06 0.96 5.76 -3.82 -0.02 0.94 16 23 N -0.83 -12.82 5.25 -10.37 -0.05 -12.87 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.75 4.69 -51.93 -0.24 0.50 16 26 H 0.07 1.17 4.49 -51.93 -0.23 0.94 16 27 H 0.05 1.16 6.97 -51.93 -0.36 0.80 16 28 H 0.04 0.99 6.14 -51.93 -0.32 0.68 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.07 1.62 7.35 -51.93 -0.38 1.24 16 31 H 0.03 0.48 5.14 -51.93 -0.27 0.21 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.61 6.09 -51.93 -0.32 0.29 16 39 H 0.08 1.50 8.13 -51.93 -0.42 1.08 16 40 H 0.03 0.38 5.70 -51.93 -0.30 0.08 16 41 H 0.33 4.37 7.50 -39.29 -0.29 4.07 16 42 H 0.34 4.74 9.08 -39.29 -0.36 4.39 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -31.29 290.27 -7.73 -39.02 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.78 Total: 9.75 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -0.61 Total: -18.19 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.23 Total: -52.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.48 Total: 17.36 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.29 -7.73 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251295436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.309 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds