Wall clock time and date at job start Mon Mar 30 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47018 * 2 1 4 4 H 1.08991 * 109.47072 * 304.59237 * 3 2 1 5 5 C 1.50697 * 109.47373 * 184.58694 * 3 2 1 6 6 H 1.08001 * 120.00386 * 265.98861 * 5 3 2 7 7 C 1.37879 * 119.99845 * 85.97511 * 5 3 2 8 8 N 1.31516 * 120.00129 * 184.85340 * 7 5 3 9 9 Si 1.86799 * 119.99832 * 4.85868 * 7 5 3 10 10 H 1.48497 * 109.47249 * 93.53934 * 9 7 5 11 11 H 1.48509 * 109.46802 * 213.53804 * 9 7 5 12 12 H 1.48501 * 109.47232 * 333.53245 * 9 7 5 13 13 N 1.46903 * 109.47082 * 64.59143 * 3 2 1 14 14 C 1.46840 * 111.00190 * 38.86161 * 13 3 2 15 15 C 1.53039 * 109.52453 * 174.16235 * 14 13 3 16 16 C 1.53119 * 109.28019 * 59.18088 * 15 14 13 17 17 C 1.53121 * 109.15930 * 302.34961 * 16 15 14 18 18 H 1.09004 * 109.50436 * 297.71010 * 17 16 15 19 19 C 1.52996 * 109.53653 * 177.61417 * 17 16 15 20 20 C 1.46849 * 110.99731 * 274.65275 * 13 3 2 21 21 H 1.09008 * 109.45373 * 65.83202 * 20 13 3 22 22 C 1.53003 * 109.46480 * 305.85606 * 20 13 3 23 23 N 1.46905 * 109.46912 * 79.71224 * 22 20 13 24 24 H 1.09000 * 109.46964 * 165.58162 * 1 2 3 25 25 H 1.09005 * 109.47233 * 285.57730 * 1 2 3 26 26 H 1.08994 * 109.47251 * 45.58310 * 1 2 3 27 27 H 1.08998 * 109.47109 * 239.99777 * 2 1 3 28 28 H 1.09005 * 109.47038 * 120.00036 * 2 1 3 29 29 H 0.97001 * 119.99816 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46552 * 54.15209 * 14 13 3 31 31 H 1.09003 * 109.45796 * 294.17442 * 14 13 3 32 32 H 1.09002 * 109.50164 * 299.23907 * 15 14 13 33 33 H 1.08993 * 109.50597 * 179.12426 * 15 14 13 34 34 H 1.08999 * 109.52348 * 182.44396 * 16 15 14 35 35 H 1.09001 * 109.52293 * 62.25033 * 16 15 14 36 36 H 1.09001 * 109.47424 * 300.17524 * 19 17 16 37 37 H 1.09002 * 109.47443 * 60.17020 * 19 17 16 38 38 H 1.09002 * 109.47458 * 180.17742 * 19 17 16 39 39 H 1.08995 * 109.47139 * 319.71553 * 22 20 13 40 40 H 1.08997 * 109.46899 * 199.71152 * 22 20 13 41 41 H 1.00901 * 110.99990 * 67.52724 * 23 22 20 42 42 H 1.00897 * 110.99627 * 191.48938 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6110 1.9795 -0.8459 5 6 3.5426 1.4441 -0.1136 6 1 4.1516 1.4852 0.7774 7 6 4.1401 1.3928 -1.3552 8 7 5.4483 1.2978 -1.4520 9 14 3.0916 1.4583 -2.8997 10 1 2.9856 2.8639 -3.3668 11 1 3.7203 0.6304 -3.9602 12 1 1.7355 0.9326 -2.6001 13 7 1.6429 2.1022 1.2510 14 6 1.7538 1.1817 2.3897 15 6 1.4740 1.9397 3.6894 16 6 0.0672 2.5415 3.6308 17 6 -0.0366 3.4584 2.4089 18 1 0.6721 4.2805 2.5094 19 6 -1.4570 4.0181 2.3085 20 6 0.2870 2.6564 1.1463 21 1 -0.4305 1.8428 1.0391 22 6 0.2040 3.5736 -0.0755 23 7 0.0412 2.7604 -1.2880 24 1 -0.3633 -0.9953 -0.2559 25 1 -0.3634 0.2760 0.9900 26 1 -0.3633 0.7192 -0.7340 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.8686 1.2621 -2.3254 30 1 2.7600 0.7640 2.4224 31 1 1.0293 0.3752 2.2764 32 1 2.2065 2.7378 3.8101 33 1 1.5410 1.2528 4.5330 34 1 -0.1200 3.1187 4.5363 35 1 -0.6683 1.7412 3.5492 36 1 -2.1655 3.1957 2.2093 37 1 -1.6870 4.5892 3.2080 38 1 -1.5306 4.6681 1.4366 39 1 1.1192 4.1606 -0.1520 40 1 -0.6494 4.2433 0.0302 41 1 -0.8572 2.3012 -1.2975 42 1 0.1706 3.3191 -2.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251295436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:56 Heat of formation + Delta-G solvation = -8.114118 kcal Electronic energy + Delta-G solvation = -19591.629231 eV Core-core repulsion = 16991.889212 eV Total energy + Delta-G solvation = -2599.740018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96219 -36.69445 -35.63964 -34.20170 -32.54927 -31.72305 -29.46414 -27.43279 -26.06916 -24.57296 -23.28643 -21.89916 -20.71520 -20.29828 -18.71858 -17.21451 -16.72108 -16.30891 -15.94101 -15.70685 -15.43928 -14.91199 -14.59201 -14.16168 -14.05984 -13.51924 -13.41783 -13.18718 -13.06693 -13.01537 -12.66304 -12.51006 -12.34338 -12.18961 -12.04899 -11.59142 -11.53899 -11.45019 -11.25940 -11.05722 -10.97030 -10.70742 -10.50898 -9.01453 -8.50205 -8.13312 -6.11231 1.44645 1.46718 1.67338 2.51612 3.18118 3.48677 3.66354 3.95025 4.09862 4.14976 4.36867 4.40992 4.46156 4.55775 4.61722 4.68877 4.71004 4.74155 4.83982 4.93946 4.96560 5.01933 5.10787 5.15041 5.17768 5.26666 5.35124 5.35717 5.40693 5.48363 5.50606 5.54659 5.74406 5.82926 6.01195 6.31487 6.34050 6.67017 6.87235 6.97598 7.08540 7.53626 9.04718 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.010067 C = 0.008901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.435621 B = 2780.833455 C = 3144.889549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.148 3.852 4 H 0.136 0.864 5 C -0.486 4.486 6 H 0.009 0.991 7 C -0.006 4.006 8 N -0.969 5.969 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.311 1.311 12 H -0.210 1.210 13 N -0.532 5.532 14 C 0.061 3.939 15 C -0.115 4.115 16 C -0.103 4.103 17 C -0.087 4.087 18 H 0.059 0.941 19 C -0.139 4.139 20 C 0.076 3.924 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.851 5.851 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.257 0.743 30 H 0.029 0.971 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.349 0.651 42 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.135 4.182 4.981 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C 0.041 3.959 4 H 0.153 0.847 5 C -0.524 4.524 6 H 0.027 0.973 7 C -0.200 4.200 8 N -0.611 5.611 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.239 1.239 12 H -0.132 1.132 13 N -0.256 5.256 14 C -0.067 4.067 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.106 4.106 18 H 0.077 0.923 19 C -0.197 4.197 20 C -0.033 4.033 21 H 0.076 0.924 22 C -0.066 4.066 23 N -0.385 5.385 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.165 0.835 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.097 4.170 5.226 19.293 hybrid contribution -0.092 -0.407 -0.952 1.040 sum -18.190 3.763 4.273 19.060 Atomic orbital electron populations 1.22216 0.95212 1.01495 1.01834 1.22252 0.95990 1.01123 0.98753 1.20667 0.92127 0.90424 0.92721 0.84737 1.21476 0.92854 1.46529 0.91582 0.97310 1.25963 0.95915 0.95109 1.02979 1.70136 1.11656 1.54720 1.24632 0.85785 0.81682 0.78266 0.77246 1.19796 1.23872 1.13160 1.62107 1.23573 1.36005 1.03912 1.21948 0.98589 0.94281 0.91912 1.21604 0.98033 0.99579 0.96080 1.21555 0.95611 0.98811 0.98116 1.21189 0.97889 0.97598 0.93949 0.92269 1.21842 0.94463 1.00980 1.02374 1.22035 0.90284 0.96634 0.94330 0.92414 1.21932 1.00729 0.94519 0.89389 1.58878 1.38537 1.35967 1.05071 0.93656 0.92696 0.89888 0.95306 0.95328 0.93423 0.95246 0.94983 0.93127 0.91057 0.90458 0.91835 0.92219 0.91573 0.91879 0.92886 0.91657 0.83508 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 8.11 71.98 0.58 -4.31 16 2 C -0.14 -6.13 4.47 30.59 0.14 -5.99 16 3 C 0.15 6.91 1.17 44.17 0.05 6.96 16 4 H 0.14 5.84 1.60 -2.60 0.00 5.84 16 5 C -0.49 -29.31 8.78 25.60 0.22 -29.09 16 6 H 0.01 0.60 7.70 -2.91 -0.02 0.57 16 7 C -0.01 -0.36 5.47 84.65 0.46 0.10 16 8 N -0.97 -64.57 13.96 21.45 0.30 -64.27 16 9 Si 0.95 45.77 26.37 68.60 1.81 47.58 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 12 H -0.21 -8.92 6.02 99.48 0.60 -8.32 16 13 N -0.53 -21.80 4.31 -850.39 -3.67 -25.46 16 14 C 0.06 2.38 4.02 86.33 0.35 2.73 16 15 C -0.12 -3.54 6.09 30.65 0.19 -3.35 16 16 C -0.10 -2.50 5.29 30.67 0.16 -2.34 16 17 C -0.09 -2.19 2.40 -10.74 -0.03 -2.22 16 18 H 0.06 1.69 8.14 -2.38 -0.02 1.68 16 19 C -0.14 -2.49 8.93 71.98 0.64 -1.85 16 20 C 0.08 2.31 1.25 44.94 0.06 2.36 16 21 H 0.06 1.68 4.37 -2.38 -0.01 1.67 16 22 C 0.06 1.82 5.76 86.30 0.50 2.32 16 23 N -0.85 -23.00 5.25 -186.71 -0.98 -23.98 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.67 4.69 -2.38 -0.01 1.66 16 26 H 0.08 2.46 4.49 -2.39 -0.01 2.45 16 27 H 0.03 1.33 6.97 -2.39 -0.02 1.31 16 28 H 0.03 1.29 6.14 -2.38 -0.01 1.28 16 29 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 30 H 0.03 1.37 7.35 -2.39 -0.02 1.35 16 31 H 0.03 1.19 5.14 -2.39 -0.01 1.18 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.05 6.09 -2.39 -0.01 1.03 16 39 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 40 H 0.07 1.39 5.70 -2.39 -0.01 1.38 16 41 H 0.35 7.44 7.50 -89.69 -0.67 6.76 16 42 H 0.35 8.40 9.08 -89.70 -0.81 7.59 16 Total: -1.00 -73.21 290.27 0.22 -72.99 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.57 Total: 27.82 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 3.33 Total: -34.67 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.35 Total: -113.71 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.81 Total: 47.58 kcal Total: -73.21 0.22 -72.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251295436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.880 kcal (2) G-P(sol) polarization free energy of solvation -73.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds