Wall clock time and date at job start Mon Mar 30 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46550 * 2 1 4 4 H 1.09005 * 109.46621 * 182.34238 * 3 2 1 5 5 C 1.50697 * 109.47206 * 62.34348 * 3 2 1 6 6 H 1.08003 * 119.99452 * 245.13148 * 5 3 2 7 7 C 1.37875 * 120.00337 * 65.12625 * 5 3 2 8 8 N 1.31517 * 119.99682 * 9.50257 * 7 5 3 9 9 Si 1.86793 * 120.00223 * 189.22667 * 7 5 3 10 10 H 1.48500 * 109.47368 * 180.27398 * 9 7 5 11 11 H 1.48505 * 109.47074 * 300.27919 * 9 7 5 12 12 H 1.48499 * 109.47101 * 60.27507 * 9 7 5 13 13 N 1.46900 * 109.47247 * 302.33729 * 3 2 1 14 14 C 1.46892 * 111.00079 * 176.52994 * 13 3 2 15 15 C 1.46897 * 111.00185 * 300.48613 * 13 3 2 16 16 H 1.09003 * 110.44037 * 59.32042 * 15 13 3 17 17 C 1.54264 * 110.48705 * 296.78105 * 15 13 3 18 18 C 1.53878 * 106.60145 * 217.71212 * 17 15 13 19 19 C 1.54264 * 106.59662 * 359.97438 * 18 17 15 20 20 C 1.54894 * 110.48874 * 181.86557 * 15 13 3 21 21 H 1.08997 * 110.75521 * 38.30257 * 20 15 13 22 22 C 1.53003 * 110.75177 * 274.93594 * 20 15 13 23 23 N 1.46900 * 109.46464 * 174.99892 * 22 20 15 24 24 H 1.08999 * 109.46757 * 184.72224 * 1 2 3 25 25 H 1.08998 * 109.47275 * 304.71496 * 1 2 3 26 26 H 1.08997 * 109.47603 * 64.72617 * 1 2 3 27 27 H 1.09004 * 109.47154 * 240.00589 * 2 1 3 28 28 H 1.08995 * 109.47751 * 119.99781 * 2 1 3 29 29 H 0.96992 * 120.00052 * 356.24148 * 8 7 5 30 30 H 1.08998 * 109.47087 * 65.76307 * 14 13 3 31 31 H 1.08997 * 109.47621 * 185.76415 * 14 13 3 32 32 H 1.09006 * 109.47440 * 305.76539 * 14 13 3 33 33 H 1.09003 * 110.03167 * 337.00067 * 17 15 13 34 34 H 1.08999 * 110.03501 * 98.37648 * 17 15 13 35 35 H 1.08998 * 110.02849 * 119.28564 * 18 17 15 36 36 H 1.09003 * 110.02889 * 240.66583 * 18 17 15 37 37 H 1.08994 * 110.48657 * 142.29043 * 19 18 17 38 38 H 1.09002 * 110.48432 * 264.93017 * 19 18 17 39 39 H 1.09003 * 109.47046 * 294.99458 * 22 20 15 40 40 H 1.09000 * 109.47280 * 55.00150 * 22 20 15 41 41 H 1.00902 * 111.00306 * 56.04789 * 23 22 20 42 42 H 1.00905 * 110.99435 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1291 1.4429 -0.0420 5 6 1.5855 2.1360 1.2584 6 1 0.8949 2.9643 1.1993 7 6 2.0512 1.7130 2.4853 8 7 3.0280 0.8349 2.5506 9 14 1.2999 2.3928 4.0546 10 1 1.9765 1.7877 5.2299 11 1 1.4736 3.8673 4.0881 12 1 -0.1477 2.0640 4.0932 13 7 1.5046 2.1512 -1.1702 14 6 1.9068 3.5640 -1.1596 15 6 1.9186 1.4953 -2.4177 16 1 1.5656 0.4643 -2.4410 17 6 3.4530 1.5441 -2.5698 18 6 3.7395 1.7747 -4.0640 19 6 2.3692 1.8574 -4.7678 20 6 1.3872 2.2781 -3.6440 21 1 1.4393 3.3526 -3.4686 22 6 -0.0427 1.8511 -3.9817 23 7 -0.5608 2.6918 -5.0693 24 1 -0.3633 -1.0242 0.0846 25 1 -0.3634 0.5852 0.8447 26 1 -0.3634 0.4387 -0.9292 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.3840 0.4440 1.7374 30 1 2.9878 3.6349 -1.2802 31 1 1.4147 4.0881 -1.9788 32 1 1.6165 4.0174 -0.2118 33 1 3.8607 2.3653 -1.9803 34 1 3.8905 0.5996 -2.2465 35 1 4.2862 2.7078 -4.1996 36 1 4.3167 0.9422 -4.4663 37 1 2.3905 2.6087 -5.5571 38 1 2.0891 0.8850 -5.1728 39 1 -0.0455 0.8074 -4.2964 40 1 -0.6741 1.9667 -3.1008 41 1 0.0435 2.6520 -5.8764 42 1 -1.5047 2.4295 -5.3107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251332193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:57 Heat of formation + Delta-G solvation = -30.272472 kcal Electronic energy + Delta-G solvation = -18982.420368 eV Core-core repulsion = 16381.719491 eV Total energy + Delta-G solvation = -2600.700876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75050 -37.67544 -35.17863 -34.30824 -32.87671 -29.84897 -29.03173 -27.81931 -26.31233 -24.84549 -23.95017 -21.96219 -20.88298 -19.99767 -18.43577 -17.48601 -16.87070 -16.22531 -15.83852 -15.60016 -15.46210 -15.41276 -14.60987 -14.41619 -14.10337 -13.78569 -13.67574 -13.40148 -13.18637 -12.65555 -12.58229 -12.44329 -12.11905 -12.07305 -11.98569 -11.91542 -11.80053 -11.59979 -11.47289 -11.26973 -11.07392 -10.48922 -10.33482 -9.53592 -8.84943 -8.51369 -6.20741 1.53737 1.60926 1.79433 2.58896 3.23923 3.29296 3.53248 3.72752 3.92621 3.95195 4.30784 4.36660 4.44863 4.48168 4.51510 4.56309 4.61237 4.66819 4.69627 4.74997 4.79198 4.82694 4.99286 5.06308 5.10883 5.14090 5.18175 5.27038 5.32396 5.35863 5.39343 5.52021 5.56252 5.70475 6.02275 6.15066 6.30367 6.54734 6.61118 6.70200 6.85919 7.56128 8.84498 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030789 B = 0.007188 C = 0.006810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.206789 B = 3894.593803 C = 4110.892089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C 0.213 3.787 4 H -0.044 1.044 5 C -0.580 4.580 6 H 0.048 0.952 7 C -0.028 4.028 8 N -0.940 5.940 9 Si 1.106 2.894 10 H -0.288 1.288 11 H -0.275 1.275 12 H -0.272 1.272 13 N -0.518 5.518 14 C 0.038 3.962 15 C 0.082 3.918 16 H 0.074 0.926 17 C -0.158 4.158 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.079 4.079 21 H 0.078 0.922 22 C 0.082 3.918 23 N -0.853 5.853 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.256 0.744 30 H 0.007 0.993 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.346 0.654 42 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 1.205 -15.281 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.145 4.145 3 C 0.105 3.895 4 H -0.027 1.027 5 C -0.618 4.618 6 H 0.067 0.933 7 C -0.226 4.226 8 N -0.578 5.578 9 Si 0.929 3.071 10 H -0.214 1.214 11 H -0.200 1.200 12 H -0.198 1.198 13 N -0.240 5.240 14 C -0.110 4.110 15 C -0.028 4.028 16 H 0.093 0.907 17 C -0.198 4.198 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.098 4.098 21 H 0.096 0.904 22 C -0.049 4.049 23 N -0.384 5.384 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.159 0.841 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.154 1.757 -13.084 13.840 hybrid contribution 1.203 -1.034 -1.673 2.306 sum -2.951 0.723 -14.757 15.067 Atomic orbital electron populations 1.21318 0.94727 0.99016 1.01545 1.21481 0.97618 0.97447 0.97992 1.19119 0.89989 0.91457 0.88910 1.02697 1.22108 1.29352 1.17926 0.92430 0.93342 1.26937 0.94597 0.96124 1.04939 1.70913 1.24438 1.30708 1.31757 0.83058 0.75782 0.75868 0.72346 1.21427 1.20046 1.19769 1.62108 1.58641 1.01902 1.01338 1.22249 0.96860 0.90354 1.01556 1.22661 0.91875 0.98212 0.90023 0.90749 1.22749 0.98648 1.00190 0.98181 1.22002 0.98063 1.01903 0.93030 1.22416 0.93423 1.01874 0.97114 1.22220 0.94185 1.00034 0.93379 0.90390 1.21552 0.94910 0.93780 0.94637 1.58649 1.07468 1.59768 1.12524 0.94049 0.94246 0.92393 0.94497 0.95035 0.93340 0.97425 0.90683 0.92852 0.93708 0.93919 0.91684 0.91005 0.89768 0.90945 0.95278 0.92396 0.84105 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.52 71.98 0.69 -3.90 16 2 C -0.11 -5.01 4.95 30.60 0.15 -4.86 16 3 C 0.21 10.59 1.14 44.17 0.05 10.64 16 4 H -0.04 -2.50 6.51 -2.38 -0.02 -2.52 16 5 C -0.58 -31.95 6.42 25.60 0.16 -31.79 16 6 H 0.05 2.71 6.69 -2.91 -0.02 2.69 16 7 C -0.03 -1.58 5.18 84.65 0.44 -1.14 16 8 N -0.94 -57.27 13.06 21.45 0.28 -56.99 16 9 Si 1.11 50.91 29.91 68.60 2.05 52.96 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.52 -21.51 3.92 -869.91 -3.41 -24.92 16 14 C 0.04 1.53 8.64 127.69 1.10 2.63 16 15 C 0.08 2.81 2.06 45.99 0.09 2.90 16 16 H 0.07 2.65 6.28 -2.39 -0.01 2.63 16 17 C -0.16 -5.34 5.13 31.32 0.16 -5.18 16 18 C -0.11 -2.77 6.80 31.32 0.21 -2.56 16 19 C -0.11 -2.37 5.72 31.73 0.18 -2.18 16 20 C -0.08 -2.14 2.52 -9.44 -0.02 -2.17 16 21 H 0.08 2.33 5.63 -2.39 -0.01 2.32 16 22 C 0.08 2.04 6.28 86.30 0.54 2.58 16 23 N -0.85 -17.07 9.62 -186.71 -1.80 -18.86 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.04 1.83 7.14 -2.39 -0.02 1.81 16 26 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 27 H 0.04 1.57 6.52 -2.38 -0.02 1.56 16 28 H 0.03 1.65 6.35 -2.39 -0.02 1.64 16 29 H 0.26 15.86 6.00 -92.71 -0.56 15.30 16 30 H 0.01 0.31 5.97 -2.39 -0.01 0.29 16 31 H 0.07 2.62 5.99 -2.39 -0.01 2.61 16 32 H 0.05 2.38 6.17 -2.38 -0.01 2.36 16 33 H 0.04 1.72 5.56 -2.39 -0.01 1.71 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 38 H 0.07 1.40 7.94 -2.39 -0.02 1.38 16 39 H 0.03 0.67 7.99 -2.39 -0.02 0.65 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.35 5.63 8.40 -89.69 -0.75 4.87 16 42 H 0.35 5.75 9.08 -89.69 -0.81 4.94 16 Total: -1.00 -62.56 306.89 0.55 -62.02 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.34 Total: 20.83 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.76 Total: -35.04 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.92 Total: -100.78 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -62.56 0.55 -62.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251332193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.744 kcal (2) G-P(sol) polarization free energy of solvation -62.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds