Wall clock time and date at job start Mon Mar 30 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47172 * 2 1 4 4 H 1.09001 * 109.47081 * 302.32784 * 3 2 1 5 5 C 1.50701 * 109.47193 * 182.32966 * 3 2 1 6 6 H 1.07994 * 120.00358 * 240.00450 * 5 3 2 7 7 C 1.37877 * 120.00065 * 59.99709 * 5 3 2 8 8 N 1.31516 * 119.99970 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00398 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46822 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47100 * 120.00338 * 9 7 5 12 12 H 1.48499 * 109.47489 * 240.00544 * 9 7 5 13 13 N 1.46899 * 109.47182 * 62.33193 * 3 2 1 14 14 C 1.46909 * 111.00005 * 64.10103 * 13 3 2 15 15 C 1.46900 * 111.00055 * 188.05348 * 13 3 2 16 16 H 1.08996 * 110.02106 * 302.13582 * 15 13 3 17 17 C 1.54272 * 110.02720 * 63.53243 * 15 13 3 18 18 C 1.54880 * 104.19637 * 95.67572 * 17 15 13 19 19 C 1.54888 * 102.75400 * 37.93704 * 18 17 15 20 20 C 1.53874 * 110.02924 * 180.69444 * 15 13 3 21 21 H 1.08993 * 110.03687 * 0.05331 * 20 15 13 22 22 C 1.52997 * 110.03215 * 121.43454 * 20 15 13 23 23 N 1.46899 * 109.47419 * 184.99791 * 22 20 15 24 24 H 1.09006 * 109.47080 * 294.78905 * 1 2 3 25 25 H 1.09000 * 109.47254 * 54.78398 * 1 2 3 26 26 H 1.08998 * 109.47257 * 174.78890 * 1 2 3 27 27 H 1.09001 * 109.47050 * 240.00047 * 2 1 3 28 28 H 1.08994 * 109.47478 * 120.00302 * 2 1 3 29 29 H 0.97006 * 120.00175 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.46929 * 183.95641 * 14 13 3 31 31 H 1.09003 * 109.46997 * 303.95487 * 14 13 3 32 32 H 1.09003 * 109.46854 * 63.95309 * 14 13 3 33 33 H 1.09006 * 110.48067 * 214.34856 * 17 15 13 34 34 H 1.08994 * 110.48876 * 336.98769 * 17 15 13 35 35 H 1.08999 * 110.75864 * 156.25601 * 18 17 15 36 36 H 1.09006 * 110.75303 * 279.62353 * 18 17 15 37 37 H 1.08999 * 110.48527 * 203.38094 * 19 18 17 38 38 H 1.08997 * 110.59403 * 80.79220 * 19 18 17 39 39 H 1.08999 * 109.47351 * 305.00235 * 22 20 15 40 40 H 1.08999 * 109.47182 * 64.99899 * 22 20 15 41 41 H 1.00901 * 111.00310 * 180.02562 * 23 22 20 42 42 H 1.00901 * 110.99929 * 303.95057 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6429 1.9682 -0.8684 5 6 3.5459 1.4429 -0.0578 6 1 4.1167 1.8996 0.7372 7 6 4.1950 0.8601 -1.1255 8 7 3.4999 0.3042 -2.0937 9 14 6.0616 0.8611 -1.1975 10 1 6.6029 1.5448 0.0045 11 1 6.5563 -0.5386 -1.2353 12 1 6.5095 1.5776 -2.4187 13 7 1.5969 2.1185 1.2266 14 6 2.1926 1.4950 2.4160 15 6 1.9026 3.5545 1.1761 16 1 2.9726 3.7034 1.0317 17 6 1.1164 4.2220 0.0287 18 6 -0.1491 4.7914 0.7164 19 6 0.3974 5.2951 2.0753 20 6 1.4453 4.2368 2.4773 21 1 0.9975 3.5023 3.1466 22 6 2.6358 4.9115 3.1616 23 7 2.2115 5.4552 4.4586 24 1 -0.3633 0.4309 0.9330 25 1 -0.3634 0.5926 -0.8396 26 1 -0.3634 -1.0234 -0.0933 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9566 -0.1055 -2.8451 30 1 1.7939 1.9689 3.3128 31 1 1.9509 0.4322 2.4286 32 1 3.2749 1.6212 2.3888 33 1 1.7021 5.0255 -0.4179 34 1 0.8419 3.4843 -0.7252 35 1 -0.5653 5.6161 0.1377 36 1 -0.8930 4.0087 0.8654 37 1 -0.4021 5.3406 2.8148 38 1 0.8665 6.2724 1.9613 39 1 3.4287 4.1798 3.3162 40 1 3.0060 5.7207 2.5321 41 1 2.9806 5.9068 4.9305 42 1 1.4336 6.0883 4.3483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251332200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:03 Heat of formation + Delta-G solvation = -10.307276 kcal Electronic energy + Delta-G solvation = -18941.694523 eV Core-core repulsion = 16341.859402 eV Total energy + Delta-G solvation = -2599.835121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.98642 -35.97043 -33.73229 -32.35988 -31.03519 -28.56154 -27.40627 -26.59064 -24.32605 -23.20890 -22.02183 -20.26633 -19.04918 -18.45110 -16.26780 -15.88128 -15.62440 -14.86704 -14.62927 -14.12512 -13.84098 -13.12966 -13.08500 -12.68265 -12.56329 -12.23140 -12.04536 -11.47376 -11.27529 -11.02043 -10.89027 -10.67869 -10.60816 -10.43516 -10.38441 -10.24956 -10.08514 -9.97780 -9.73838 -9.59783 -9.31666 -8.95643 -8.60056 -8.30833 -6.99199 -5.95176 -4.07913 3.25869 3.34752 3.37687 4.41318 4.63682 5.02660 5.06898 5.19755 5.28874 5.44103 5.65155 5.72555 5.91729 6.00557 6.06463 6.18869 6.27874 6.29674 6.35088 6.42348 6.46835 6.49484 6.56289 6.67087 6.74258 6.81504 6.86274 6.91947 6.98257 7.17095 7.23746 7.24776 7.43883 7.49633 7.67830 7.80982 8.06058 8.23379 8.42468 8.55926 9.03350 9.59004 11.03417 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.008554 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.066755 B = 3272.596251 C = 3810.755706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.210 3.790 4 H 0.043 0.957 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.529 5.529 14 C 0.031 3.969 15 C 0.095 3.905 16 H 0.044 0.956 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.090 4.090 21 H 0.089 0.911 22 C 0.068 3.932 23 N -0.850 5.850 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.023 0.977 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.259 0.741 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.335 0.665 42 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 8.070 7.097 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.061 0.939 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.253 5.253 14 C -0.117 4.117 15 C -0.015 4.015 16 H 0.062 0.938 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.109 4.109 21 H 0.108 0.892 22 C -0.063 4.063 23 N -0.379 5.379 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.146 0.854 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.131 7.153 7.138 11.334 hybrid contribution 2.413 0.938 -0.620 2.662 sum -2.718 8.091 6.519 10.740 Atomic orbital electron populations 1.21686 0.98892 0.98204 1.00533 1.21599 0.92145 0.99320 1.01889 1.19339 0.92433 0.90821 0.87045 0.93914 1.21779 0.92919 1.36851 1.06145 0.92675 1.24896 0.97717 0.95216 0.95629 1.69886 1.34741 1.37923 1.09930 0.86676 0.86611 0.77698 0.77821 1.20051 1.21043 1.21111 1.62545 1.57792 1.00763 1.04201 1.22226 0.97468 0.99237 0.92800 1.21981 0.97521 0.89538 0.92427 0.93768 1.22390 0.95516 0.99258 0.98053 1.22408 0.98157 0.99449 0.95378 1.22372 0.97994 0.97583 0.97414 1.21982 0.94604 0.97111 0.97185 0.89238 1.21946 0.97757 0.97838 0.88725 1.58763 1.12252 1.44025 1.22860 0.93483 0.94291 0.95775 0.89189 0.94890 0.93049 0.93636 0.92305 0.95614 0.92761 0.90281 0.92880 0.91267 0.92365 0.92911 0.91219 0.95915 0.85354 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.71 37.15 0.36 -2.41 16 2 C -0.11 -2.63 5.05 -26.73 -0.14 -2.77 16 3 C 0.21 5.06 1.57 -68.86 -0.11 4.95 16 4 H 0.04 1.14 5.95 -51.93 -0.31 0.83 16 5 C -0.54 -14.23 7.09 -34.44 -0.24 -14.48 16 6 H 0.06 1.49 5.85 -52.49 -0.31 1.18 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.82 11.30 55.43 0.63 -24.19 16 9 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 N -0.53 -10.93 4.01 -226.95 -0.91 -11.84 16 14 C 0.03 0.62 8.54 60.07 0.51 1.14 16 15 C 0.10 1.79 2.13 -66.59 -0.14 1.65 16 16 H 0.04 0.95 6.52 -51.93 -0.34 0.61 16 17 C -0.11 -2.03 6.28 -25.07 -0.16 -2.19 16 18 C -0.12 -1.72 6.91 -24.74 -0.17 -1.89 16 19 C -0.12 -1.57 5.56 -25.07 -0.14 -1.71 16 20 C -0.09 -1.40 2.30 -89.50 -0.21 -1.60 16 21 H 0.09 1.52 6.03 -51.93 -0.31 1.21 16 22 C 0.07 0.97 5.90 -3.83 -0.02 0.95 16 23 N -0.85 -10.19 9.62 -10.37 -0.10 -10.29 16 24 H 0.05 0.92 7.83 -51.93 -0.41 0.52 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 2.39 6.01 -51.93 -0.31 2.07 16 28 H 0.03 0.78 6.31 -51.93 -0.33 0.45 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.05 0.82 6.05 -51.93 -0.31 0.50 16 31 H 0.06 1.19 6.18 -51.93 -0.32 0.87 16 32 H 0.03 0.55 6.38 -51.93 -0.33 0.22 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.59 5.93 -51.93 -0.31 1.28 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.66 7.76 -51.93 -0.40 0.26 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 41 H 0.33 3.38 9.08 -39.29 -0.36 3.02 16 42 H 0.34 3.58 8.23 -39.29 -0.32 3.25 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -27.08 309.54 -8.47 -35.54 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.18 Total: 6.59 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.55 Total: -16.64 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.38 Total: -46.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.08 -8.47 -35.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251332200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.236 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds