Wall clock time and date at job start Mon Mar 30 2020 03:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47172 * 2 1 4 4 H 1.09001 * 109.47081 * 302.32784 * 3 2 1 5 5 C 1.50701 * 109.47193 * 182.32966 * 3 2 1 6 6 H 1.07994 * 120.00358 * 240.00450 * 5 3 2 7 7 C 1.37877 * 120.00065 * 59.99709 * 5 3 2 8 8 N 1.31516 * 119.99970 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00398 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46822 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47100 * 120.00338 * 9 7 5 12 12 H 1.48499 * 109.47489 * 240.00544 * 9 7 5 13 13 N 1.46899 * 109.47182 * 62.33193 * 3 2 1 14 14 C 1.46909 * 111.00005 * 64.10103 * 13 3 2 15 15 C 1.46900 * 111.00055 * 188.05348 * 13 3 2 16 16 H 1.08996 * 110.02106 * 302.13582 * 15 13 3 17 17 C 1.54272 * 110.02720 * 63.53243 * 15 13 3 18 18 C 1.54880 * 104.19637 * 95.67572 * 17 15 13 19 19 C 1.54888 * 102.75400 * 37.93704 * 18 17 15 20 20 C 1.53874 * 110.02924 * 180.69444 * 15 13 3 21 21 H 1.08993 * 110.03687 * 0.05331 * 20 15 13 22 22 C 1.52997 * 110.03215 * 121.43454 * 20 15 13 23 23 N 1.46899 * 109.47419 * 184.99791 * 22 20 15 24 24 H 1.09006 * 109.47080 * 294.78905 * 1 2 3 25 25 H 1.09000 * 109.47254 * 54.78398 * 1 2 3 26 26 H 1.08998 * 109.47257 * 174.78890 * 1 2 3 27 27 H 1.09001 * 109.47050 * 240.00047 * 2 1 3 28 28 H 1.08994 * 109.47478 * 120.00302 * 2 1 3 29 29 H 0.97006 * 120.00175 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.46929 * 183.95641 * 14 13 3 31 31 H 1.09003 * 109.46997 * 303.95487 * 14 13 3 32 32 H 1.09003 * 109.46854 * 63.95309 * 14 13 3 33 33 H 1.09006 * 110.48067 * 214.34856 * 17 15 13 34 34 H 1.08994 * 110.48876 * 336.98769 * 17 15 13 35 35 H 1.08999 * 110.75864 * 156.25601 * 18 17 15 36 36 H 1.09006 * 110.75303 * 279.62353 * 18 17 15 37 37 H 1.08999 * 110.48527 * 203.38094 * 19 18 17 38 38 H 1.08997 * 110.59403 * 80.79220 * 19 18 17 39 39 H 1.08999 * 109.47351 * 305.00235 * 22 20 15 40 40 H 1.08999 * 109.47182 * 64.99899 * 22 20 15 41 41 H 1.00901 * 111.00310 * 180.02562 * 23 22 20 42 42 H 1.00901 * 110.99929 * 303.95057 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6429 1.9682 -0.8684 5 6 3.5459 1.4429 -0.0578 6 1 4.1167 1.8996 0.7372 7 6 4.1950 0.8601 -1.1255 8 7 3.4999 0.3042 -2.0937 9 14 6.0616 0.8611 -1.1975 10 1 6.6029 1.5448 0.0045 11 1 6.5563 -0.5386 -1.2353 12 1 6.5095 1.5776 -2.4187 13 7 1.5969 2.1185 1.2266 14 6 2.1926 1.4950 2.4160 15 6 1.9026 3.5545 1.1761 16 1 2.9726 3.7034 1.0317 17 6 1.1164 4.2220 0.0287 18 6 -0.1491 4.7914 0.7164 19 6 0.3974 5.2951 2.0753 20 6 1.4453 4.2368 2.4773 21 1 0.9975 3.5023 3.1466 22 6 2.6358 4.9115 3.1616 23 7 2.2115 5.4552 4.4586 24 1 -0.3633 0.4309 0.9330 25 1 -0.3634 0.5926 -0.8396 26 1 -0.3634 -1.0234 -0.0933 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9566 -0.1055 -2.8451 30 1 1.7939 1.9689 3.3128 31 1 1.9509 0.4322 2.4286 32 1 3.2749 1.6212 2.3888 33 1 1.7021 5.0255 -0.4179 34 1 0.8419 3.4843 -0.7252 35 1 -0.5653 5.6161 0.1377 36 1 -0.8930 4.0087 0.8654 37 1 -0.4021 5.3406 2.8148 38 1 0.8665 6.2724 1.9613 39 1 3.4287 4.1798 3.3162 40 1 3.0060 5.7207 2.5321 41 1 2.9806 5.9068 4.9305 42 1 1.4336 6.0883 4.3483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251332200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:02 Heat of formation + Delta-G solvation = -27.936270 kcal Electronic energy + Delta-G solvation = -18942.458973 eV Core-core repulsion = 16341.859402 eV Total energy + Delta-G solvation = -2600.599571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45858 -37.58716 -34.94632 -34.25204 -32.82803 -29.87684 -28.82343 -28.44805 -26.01662 -24.79124 -23.52367 -21.71995 -20.51299 -20.18894 -18.17591 -17.39734 -16.78796 -16.71056 -15.97716 -15.70592 -15.08974 -14.90747 -14.59396 -14.39596 -13.81611 -13.74336 -13.55171 -13.26389 -13.14187 -12.78683 -12.61087 -12.37413 -12.27755 -12.04163 -11.82535 -11.61287 -11.54942 -11.41580 -11.39266 -11.26810 -11.12922 -10.83671 -10.37534 -9.58719 -8.81979 -8.00402 -6.22636 1.32598 1.36100 1.44897 2.39111 3.16063 3.38300 3.68987 3.81288 3.99034 4.15548 4.42624 4.47606 4.55586 4.63161 4.71301 4.76640 4.78197 4.81970 4.88831 4.94153 4.98900 5.04721 5.13443 5.19197 5.20933 5.26680 5.34877 5.41514 5.44691 5.49599 5.56521 5.63569 5.69128 5.84785 6.11489 6.25252 6.26680 6.46238 6.66291 6.79631 7.01219 7.47413 8.93161 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.008554 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.066755 B = 3272.596251 C = 3810.755706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C 0.218 3.782 4 H 0.015 0.985 5 C -0.544 4.544 6 H 0.044 0.956 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.523 5.523 14 C 0.039 3.961 15 C 0.092 3.908 16 H 0.012 0.988 17 C -0.117 4.117 18 C -0.108 4.108 19 C -0.106 4.106 20 C -0.081 4.081 21 H 0.080 0.920 22 C 0.076 3.924 23 N -0.849 5.849 24 H 0.056 0.944 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.005 0.995 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.026 0.974 41 H 0.348 0.652 42 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 9.402 8.502 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.146 4.146 3 C 0.111 3.889 4 H 0.033 0.967 5 C -0.584 4.584 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.246 5.246 14 C -0.109 4.109 15 C -0.018 4.018 16 H 0.030 0.970 17 C -0.155 4.155 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.100 4.100 21 H 0.098 0.902 22 C -0.056 4.056 23 N -0.380 5.380 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.161 0.839 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.887 8.501 8.561 13.424 hybrid contribution 2.654 0.539 -1.048 2.904 sum -3.233 9.040 7.513 12.191 Atomic orbital electron populations 1.21532 0.96200 0.99438 1.00796 1.21458 0.94513 0.98501 1.00118 1.19096 0.91046 0.91131 0.87672 0.96679 1.22000 0.94347 1.36296 1.05723 0.93737 1.25556 1.01510 0.95214 0.95535 1.70004 1.36083 1.38595 1.10345 0.85783 0.82120 0.77684 0.77691 1.19973 1.20646 1.20742 1.62514 1.57252 1.01766 1.03081 1.22181 0.96168 0.99204 0.93364 1.22083 0.95943 0.88683 0.95081 0.96973 1.22372 0.97243 0.98648 0.97238 1.22354 0.96287 0.99860 0.96046 1.22333 0.97752 0.97321 0.96918 1.21851 0.95653 0.97446 0.95025 0.90210 1.21734 0.96521 0.97455 0.89847 1.58670 1.13224 1.44790 1.21344 0.92488 0.94783 0.93883 0.92206 0.95279 0.93053 0.91213 0.92757 0.97688 0.92438 0.93271 0.90631 0.91913 0.90250 0.91253 0.93343 0.95581 0.83924 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.71 71.98 0.70 -4.24 16 2 C -0.11 -5.18 5.05 30.59 0.15 -5.03 16 3 C 0.22 10.81 1.57 44.17 0.07 10.88 16 4 H 0.02 0.85 5.95 -2.39 -0.01 0.84 16 5 C -0.54 -29.68 7.09 25.60 0.18 -29.50 16 6 H 0.04 2.48 5.85 -2.91 -0.02 2.46 16 7 C 0.02 1.18 5.30 84.65 0.45 1.63 16 8 N -0.91 -52.32 11.30 21.45 0.24 -52.07 16 9 Si 0.94 44.23 29.54 68.60 2.03 46.26 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.52 -21.81 4.01 -871.92 -3.49 -25.31 16 14 C 0.04 1.56 8.54 127.69 1.09 2.66 16 15 C 0.09 3.46 2.13 45.64 0.10 3.56 16 16 H 0.01 0.54 6.52 -2.39 -0.02 0.52 16 17 C -0.12 -4.16 6.28 31.67 0.20 -3.96 16 18 C -0.11 -2.95 6.91 31.88 0.22 -2.73 16 19 C -0.11 -2.51 5.56 31.67 0.18 -2.34 16 20 C -0.08 -2.38 2.30 -10.07 -0.02 -2.40 16 21 H 0.08 2.54 6.03 -2.39 -0.01 2.52 16 22 C 0.08 2.04 5.90 86.30 0.51 2.55 16 23 N -0.85 -17.99 9.62 -186.73 -1.80 -19.79 16 24 H 0.06 2.17 7.83 -2.38 -0.02 2.15 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 3.26 6.01 -2.39 -0.01 3.25 16 28 H 0.03 1.38 6.31 -2.39 -0.02 1.37 16 29 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 30 H 0.07 2.43 6.05 -2.39 -0.01 2.42 16 31 H 0.05 2.19 6.18 -2.39 -0.01 2.17 16 32 H 0.00 0.20 6.38 -2.39 -0.02 0.19 16 33 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.05 2.04 5.93 -2.39 -0.01 2.02 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.46 7.76 -2.39 -0.02 1.44 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.03 0.68 8.00 -2.39 -0.02 0.67 16 41 H 0.35 6.09 9.08 -89.69 -0.81 5.27 16 42 H 0.35 6.14 8.23 -89.69 -0.74 5.40 16 Total: -1.00 -59.10 309.54 0.26 -58.84 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.54 Total: 20.98 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 3.82 Total: -28.91 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -5.05 Total: -97.17 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -59.10 0.26 -58.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251332200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.908 kcal (2) G-P(sol) polarization free energy of solvation -59.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds