Wall clock time and date at job start Mon Mar 30 2020 03:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 H 1.08998 * 109.47410 * 184.04749 * 3 2 1 5 5 C 1.50699 * 109.47357 * 64.04803 * 3 2 1 6 6 H 1.08004 * 120.00275 * 245.08565 * 5 3 2 7 7 C 1.37873 * 120.00002 * 65.08035 * 5 3 2 8 8 N 1.31512 * 120.00142 * 7.35327 * 7 5 3 9 9 Si 1.86804 * 120.00047 * 187.35663 * 7 5 3 10 10 H 1.48500 * 109.47009 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.46894 * 299.99723 * 9 7 5 12 12 H 1.48496 * 109.47472 * 59.99908 * 9 7 5 13 13 N 1.46897 * 109.46658 * 304.05096 * 3 2 1 14 14 C 1.46906 * 111.00175 * 173.51013 * 13 3 2 15 15 C 1.52990 * 109.47323 * 195.96950 * 14 13 3 16 16 C 1.46903 * 111.00300 * 297.45817 * 13 3 2 17 17 H 1.08995 * 109.50584 * 209.87810 * 16 13 3 18 18 C 1.53126 * 109.49854 * 329.95934 * 16 13 3 19 19 C 1.53125 * 109.15568 * 177.59020 * 18 16 13 20 20 C 1.53034 * 109.27941 * 302.34623 * 19 18 16 21 21 N 1.46840 * 109.52628 * 59.18232 * 20 19 18 22 22 C 1.46850 * 111.19837 * 298.25965 * 21 20 19 23 23 H 1.08997 * 109.46755 * 64.32090 * 1 2 3 24 24 H 1.09002 * 109.46860 * 184.31760 * 1 2 3 25 25 H 1.08999 * 109.47234 * 304.31911 * 1 2 3 26 26 H 1.08992 * 109.47382 * 239.99790 * 2 1 3 27 27 H 1.09004 * 109.47162 * 119.99427 * 2 1 3 28 28 H 0.97005 * 119.99967 * 355.71787 * 8 7 5 29 29 H 1.09002 * 109.46606 * 315.96635 * 14 13 3 30 30 H 1.08994 * 109.47230 * 75.95965 * 14 13 3 31 31 H 1.09004 * 109.47282 * 304.80420 * 15 14 13 32 32 H 1.08998 * 109.48077 * 64.81223 * 15 14 13 33 33 H 1.09000 * 109.47193 * 184.81464 * 15 14 13 34 34 H 1.08995 * 109.52287 * 297.49494 * 18 16 13 35 35 H 1.09001 * 109.52078 * 57.62644 * 18 16 13 36 36 H 1.08996 * 109.50432 * 62.29013 * 19 18 16 37 37 H 1.09003 * 109.49979 * 182.40356 * 19 18 16 38 38 H 1.09002 * 109.46109 * 179.19755 * 20 19 18 39 39 H 1.08994 * 109.46313 * 299.17175 * 20 19 18 40 40 H 1.00905 * 111.00091 * 62.35243 * 21 20 19 41 41 H 1.09007 * 109.45911 * 301.72552 * 22 21 20 42 42 H 1.09002 * 109.46398 * 181.76175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1276 1.4434 -0.0725 5 6 1.6213 2.1234 1.2775 6 1 0.9301 2.9527 1.2460 7 6 2.1204 1.6876 2.4866 8 7 3.0688 0.7770 2.5167 9 14 1.4495 2.3906 4.0820 10 1 2.1478 1.7621 5.2321 11 1 1.6740 3.8583 4.1093 12 1 -0.0060 2.1107 4.1730 13 7 1.4720 2.1626 -1.1475 14 6 1.8153 3.5900 -1.0958 15 6 0.9058 4.3682 -2.0485 16 6 1.9091 1.5618 -2.4148 17 1 1.9536 2.3308 -3.1859 18 6 3.2960 0.9386 -2.2336 19 6 3.7179 0.2626 -3.5412 20 6 2.6736 -0.7873 -3.9272 21 7 1.3649 -0.1413 -4.0894 22 6 0.9172 0.4742 -2.8335 23 1 -0.3633 0.4453 -0.9262 24 1 -0.3633 -1.0248 0.0774 25 1 -0.3633 0.5794 0.8487 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.3737 0.3668 1.6923 29 1 1.6785 3.9599 -0.0796 30 1 2.8549 3.7247 -1.3945 31 1 0.9787 3.9425 -3.0493 32 1 -0.1251 4.3039 -1.7005 33 1 1.2159 5.4128 -2.0748 34 1 4.0145 1.7171 -1.9775 35 1 3.2609 0.1981 -1.4345 36 1 3.7908 1.0108 -4.3305 37 1 4.6860 -0.2196 -3.4056 38 1 2.9638 -1.2604 -4.8653 39 1 2.6110 -1.5424 -3.1437 40 1 1.3864 0.5365 -4.8367 41 1 0.8630 -0.2870 -2.0552 42 1 -0.0683 0.9172 -2.9773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251346253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:24 Heat of formation + Delta-G solvation = 8.641383 kcal Electronic energy + Delta-G solvation = -19438.641183 eV Core-core repulsion = 16839.627738 eV Total energy + Delta-G solvation = -2599.013445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69340 -36.31989 -33.65195 -31.66608 -31.32377 -29.82827 -28.33634 -25.36471 -23.97668 -23.14080 -22.23890 -20.91450 -20.03400 -18.98059 -16.54804 -15.89518 -15.34996 -14.76140 -14.41264 -13.85356 -13.83022 -13.61064 -13.18861 -13.05679 -12.58364 -12.16730 -11.86367 -11.66889 -11.52549 -11.38733 -11.22723 -10.88451 -10.81757 -10.70486 -10.40051 -10.32360 -10.14390 -10.02479 -9.96066 -9.75587 -9.44305 -8.43845 -8.36371 -8.11353 -7.14182 -6.32177 -4.02829 3.43068 3.45818 3.63418 4.45705 4.55118 4.83575 5.04499 5.26009 5.30767 5.38346 5.50434 5.64083 5.72879 5.79942 5.84094 5.95845 6.00866 6.06794 6.20324 6.23312 6.26989 6.30412 6.34831 6.37128 6.53079 6.61236 6.63984 6.72232 6.83195 6.97222 7.11163 7.20115 7.25115 7.44549 7.51444 7.59382 7.91938 8.07529 8.43169 8.61162 8.89797 9.66341 11.03505 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.008610 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.608510 B = 3251.268245 C = 3593.724684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C 0.202 3.798 4 H -0.002 1.002 5 C -0.581 4.581 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.515 5.515 14 C 0.054 3.946 15 C -0.142 4.142 16 C 0.052 3.948 17 H 0.058 0.942 18 C -0.155 4.155 19 C -0.153 4.153 20 C 0.057 3.943 21 N -0.686 5.686 22 C 0.050 3.950 23 H 0.055 0.945 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.269 0.731 29 H 0.093 0.907 30 H 0.012 0.988 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.331 0.669 41 H 0.101 0.899 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 0.634 -10.672 10.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.096 3.904 4 H 0.015 0.985 5 C -0.620 4.620 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.550 5.550 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.214 1.214 13 N -0.239 5.239 14 C -0.074 4.074 15 C -0.200 4.200 16 C -0.059 4.059 17 H 0.077 0.923 18 C -0.194 4.194 19 C -0.192 4.192 20 C -0.073 4.073 21 N -0.313 5.313 22 C -0.079 4.079 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.147 0.853 41 H 0.119 0.881 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.200 -0.033 -8.872 9.141 hybrid contribution 1.474 0.995 -1.665 2.436 sum -0.726 0.961 -10.538 10.606 Atomic orbital electron populations 1.21632 0.96345 0.98112 1.02539 1.21915 0.96453 0.98561 0.99146 1.19421 0.92219 0.90507 0.88293 0.98469 1.21883 1.30326 1.18401 0.91344 0.92561 1.25672 0.94420 0.96333 1.01964 1.70807 1.25334 1.27060 1.31798 0.83600 0.75851 0.75542 0.75687 1.20980 1.21669 1.21407 1.62176 1.59048 1.01589 1.01045 1.22022 0.94959 0.89219 1.01235 1.21808 1.00828 0.98366 0.99025 1.22384 0.93113 0.96376 0.94030 0.92344 1.22429 0.98118 1.01050 0.97782 1.22260 0.99759 0.99081 0.98148 1.21987 0.87715 0.96417 1.01163 1.60874 1.27292 1.35438 1.07708 1.22678 0.97293 0.96731 0.91246 0.92587 0.96204 0.92030 0.94697 0.91996 0.91928 0.88832 0.96942 0.93879 0.92412 0.93590 0.92837 0.89510 0.92790 0.92062 0.91387 0.91019 0.85282 0.88119 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.62 37.16 0.32 -2.39 16 2 C -0.12 -2.74 4.25 -26.73 -0.11 -2.86 16 3 C 0.20 4.75 0.84 -68.87 -0.06 4.69 16 4 H 0.00 -0.05 5.61 -51.93 -0.29 -0.35 16 5 C -0.58 -15.31 6.37 -34.44 -0.22 -15.53 16 6 H 0.06 1.51 6.58 -52.48 -0.35 1.16 16 7 C 0.02 0.55 5.20 -17.82 -0.09 0.46 16 8 N -0.91 -26.54 13.06 55.43 0.72 -25.81 16 9 Si 1.06 24.76 29.91 -169.99 -5.08 19.68 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.51 -10.42 3.50 -220.01 -0.77 -11.19 16 14 C 0.05 1.05 5.39 -3.83 -0.02 1.03 16 15 C -0.14 -2.27 10.02 37.15 0.37 -1.90 16 16 C 0.05 0.91 2.04 -67.63 -0.14 0.77 16 17 H 0.06 0.98 6.22 -51.93 -0.32 0.66 16 18 C -0.16 -2.71 3.90 -26.60 -0.10 -2.82 16 19 C -0.15 -2.13 6.08 -26.65 -0.16 -2.30 16 20 C 0.06 0.76 6.55 -3.84 -0.03 0.74 16 21 N -0.69 -9.67 6.87 -113.82 -0.78 -10.45 16 22 C 0.05 0.81 4.44 -3.83 -0.02 0.79 16 23 H 0.06 1.10 5.27 -51.93 -0.27 0.83 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 1.42 7.21 -51.93 -0.37 1.05 16 26 H 0.03 0.72 3.93 -51.93 -0.20 0.52 16 27 H 0.06 1.56 6.19 -51.93 -0.32 1.23 16 28 H 0.27 7.79 5.87 -40.82 -0.24 7.55 16 29 H 0.09 2.05 5.75 -51.93 -0.30 1.75 16 30 H 0.01 0.24 8.02 -51.93 -0.42 -0.17 16 31 H 0.04 0.65 6.56 -51.93 -0.34 0.30 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 1.01 7.91 -51.93 -0.41 0.60 16 35 H 0.09 1.71 4.37 -51.93 -0.23 1.48 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.33 4.16 8.86 -39.29 -0.35 3.81 16 41 H 0.10 1.83 3.54 -51.92 -0.18 1.64 16 42 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -27.42 295.12 -8.48 -35.90 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.76 Total: 6.72 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.26 Total: -19.30 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.83 Total: -47.45 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.42 -8.48 -35.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251346253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.544 kcal (2) G-P(sol) polarization free energy of solvation -27.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds