Wall clock time and date at job start Mon Mar 30 2020 03:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 H 1.08998 * 109.47410 * 184.04749 * 3 2 1 5 5 C 1.50699 * 109.47357 * 64.04803 * 3 2 1 6 6 H 1.08004 * 120.00275 * 245.08565 * 5 3 2 7 7 C 1.37873 * 120.00002 * 65.08035 * 5 3 2 8 8 N 1.31512 * 120.00142 * 7.35327 * 7 5 3 9 9 Si 1.86804 * 120.00047 * 187.35663 * 7 5 3 10 10 H 1.48500 * 109.47009 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.46894 * 299.99723 * 9 7 5 12 12 H 1.48496 * 109.47472 * 59.99908 * 9 7 5 13 13 N 1.46897 * 109.46658 * 304.05096 * 3 2 1 14 14 C 1.46906 * 111.00175 * 173.51013 * 13 3 2 15 15 C 1.52990 * 109.47323 * 195.96950 * 14 13 3 16 16 C 1.46903 * 111.00300 * 297.45817 * 13 3 2 17 17 H 1.08995 * 109.50584 * 209.87810 * 16 13 3 18 18 C 1.53126 * 109.49854 * 329.95934 * 16 13 3 19 19 C 1.53125 * 109.15568 * 177.59020 * 18 16 13 20 20 C 1.53034 * 109.27941 * 302.34623 * 19 18 16 21 21 N 1.46840 * 109.52628 * 59.18232 * 20 19 18 22 22 C 1.46850 * 111.19837 * 298.25965 * 21 20 19 23 23 H 1.08997 * 109.46755 * 64.32090 * 1 2 3 24 24 H 1.09002 * 109.46860 * 184.31760 * 1 2 3 25 25 H 1.08999 * 109.47234 * 304.31911 * 1 2 3 26 26 H 1.08992 * 109.47382 * 239.99790 * 2 1 3 27 27 H 1.09004 * 109.47162 * 119.99427 * 2 1 3 28 28 H 0.97005 * 119.99967 * 355.71787 * 8 7 5 29 29 H 1.09002 * 109.46606 * 315.96635 * 14 13 3 30 30 H 1.08994 * 109.47230 * 75.95965 * 14 13 3 31 31 H 1.09004 * 109.47282 * 304.80420 * 15 14 13 32 32 H 1.08998 * 109.48077 * 64.81223 * 15 14 13 33 33 H 1.09000 * 109.47193 * 184.81464 * 15 14 13 34 34 H 1.08995 * 109.52287 * 297.49494 * 18 16 13 35 35 H 1.09001 * 109.52078 * 57.62644 * 18 16 13 36 36 H 1.08996 * 109.50432 * 62.29013 * 19 18 16 37 37 H 1.09003 * 109.49979 * 182.40356 * 19 18 16 38 38 H 1.09002 * 109.46109 * 179.19755 * 20 19 18 39 39 H 1.08994 * 109.46313 * 299.17175 * 20 19 18 40 40 H 1.00905 * 111.00091 * 62.35243 * 21 20 19 41 41 H 1.09007 * 109.45911 * 301.72552 * 22 21 20 42 42 H 1.09002 * 109.46398 * 181.76175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1276 1.4434 -0.0725 5 6 1.6213 2.1234 1.2775 6 1 0.9301 2.9527 1.2460 7 6 2.1204 1.6876 2.4866 8 7 3.0688 0.7770 2.5167 9 14 1.4495 2.3906 4.0820 10 1 2.1478 1.7621 5.2321 11 1 1.6740 3.8583 4.1093 12 1 -0.0060 2.1107 4.1730 13 7 1.4720 2.1626 -1.1475 14 6 1.8153 3.5900 -1.0958 15 6 0.9058 4.3682 -2.0485 16 6 1.9091 1.5618 -2.4148 17 1 1.9536 2.3308 -3.1859 18 6 3.2960 0.9386 -2.2336 19 6 3.7179 0.2626 -3.5412 20 6 2.6736 -0.7873 -3.9272 21 7 1.3649 -0.1413 -4.0894 22 6 0.9172 0.4742 -2.8335 23 1 -0.3633 0.4453 -0.9262 24 1 -0.3633 -1.0248 0.0774 25 1 -0.3633 0.5794 0.8487 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.3737 0.3668 1.6923 29 1 1.6785 3.9599 -0.0796 30 1 2.8549 3.7247 -1.3945 31 1 0.9787 3.9425 -3.0493 32 1 -0.1251 4.3039 -1.7005 33 1 1.2159 5.4128 -2.0748 34 1 4.0145 1.7171 -1.9775 35 1 3.2609 0.1981 -1.4345 36 1 3.7908 1.0108 -4.3305 37 1 4.6860 -0.2196 -3.4056 38 1 2.9638 -1.2604 -4.8653 39 1 2.6110 -1.5424 -3.1437 40 1 1.3864 0.5365 -4.8367 41 1 0.8630 -0.2870 -2.0552 42 1 -0.0683 0.9172 -2.9773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251346253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:24 Heat of formation + Delta-G solvation = -9.590580 kcal Electronic energy + Delta-G solvation = -19439.431780 eV Core-core repulsion = 16839.627738 eV Total energy + Delta-G solvation = -2599.804042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18543 -37.79374 -35.45994 -33.47871 -32.61210 -31.29666 -29.91721 -27.14463 -25.79498 -24.52186 -23.63825 -22.36138 -21.57430 -20.74023 -18.44105 -17.30929 -16.83697 -16.26432 -15.74580 -15.66191 -15.44179 -15.18199 -14.68959 -14.51037 -14.10639 -13.65319 -13.51191 -13.23277 -13.00993 -12.87075 -12.70185 -12.61203 -12.22613 -12.19532 -11.99671 -11.98494 -11.85295 -11.67306 -11.54129 -11.43785 -11.08631 -10.41756 -10.33892 -9.43497 -8.78837 -8.50655 -6.21007 1.52558 1.59676 1.77862 2.57862 3.13557 3.26583 3.50281 3.73399 3.98931 4.04658 4.18712 4.24469 4.36570 4.42796 4.46274 4.55887 4.57493 4.59009 4.72407 4.74885 4.88254 4.93155 4.95428 5.00010 5.03465 5.09119 5.17202 5.21326 5.27916 5.36200 5.41175 5.43625 5.60462 5.73620 5.96726 6.08206 6.14530 6.52841 6.55554 6.62496 6.85558 7.55665 8.85027 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.008610 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.608510 B = 3251.268245 C = 3593.724684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.112 4.112 3 C 0.212 3.788 4 H -0.037 1.037 5 C -0.580 4.580 6 H 0.049 0.951 7 C -0.029 4.029 8 N -0.940 5.940 9 Si 1.105 2.895 10 H -0.289 1.289 11 H -0.275 1.275 12 H -0.273 1.273 13 N -0.517 5.517 14 C 0.052 3.948 15 C -0.129 4.129 16 C 0.054 3.946 17 H 0.074 0.926 18 C -0.152 4.152 19 C -0.144 4.144 20 C 0.059 3.941 21 N -0.680 5.680 22 C 0.059 3.941 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.258 0.742 29 H 0.063 0.937 30 H 0.004 0.996 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.345 0.655 41 H 0.081 0.919 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 0.995 -12.789 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.150 4.150 3 C 0.104 3.896 4 H -0.019 1.019 5 C -0.619 4.619 6 H 0.067 0.933 7 C -0.227 4.227 8 N -0.579 5.579 9 Si 0.929 3.071 10 H -0.215 1.215 11 H -0.201 1.201 12 H -0.199 1.199 13 N -0.240 5.240 14 C -0.076 4.076 15 C -0.187 4.187 16 C -0.057 4.057 17 H 0.092 0.908 18 C -0.190 4.190 19 C -0.183 4.183 20 C -0.071 4.071 21 N -0.308 5.308 22 C -0.070 4.070 23 H 0.089 0.911 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.163 0.837 41 H 0.099 0.901 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.272 0.340 -11.028 11.508 hybrid contribution 1.847 0.903 -1.081 2.323 sum -1.425 1.243 -12.109 12.256 Atomic orbital electron populations 1.21528 0.94945 0.98986 1.02073 1.21765 0.97454 0.97484 0.98336 1.19160 0.90222 0.91404 0.88784 1.01934 1.22157 1.29213 1.17819 0.92661 0.93288 1.26898 0.94238 0.96263 1.05288 1.70910 1.27109 1.28708 1.31178 0.83064 0.75969 0.75735 0.72340 1.21511 1.20063 1.19862 1.62178 1.58702 1.01849 1.01295 1.22031 0.95597 0.89290 1.00692 1.21687 0.99584 0.98983 0.98421 1.22495 0.93371 0.97069 0.92734 0.90807 1.22322 0.97835 0.99847 0.99036 1.22212 1.00351 0.99470 0.96314 1.22031 0.87012 0.95804 1.02224 1.60828 1.27708 1.35465 1.06834 1.22467 0.97126 0.95575 0.91875 0.91102 0.94333 0.94578 0.92920 0.95407 0.93195 0.91838 0.97789 0.92401 0.92562 0.91510 0.95124 0.92395 0.91034 0.91289 0.88387 0.92414 0.83670 0.90060 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 8.62 71.98 0.62 -4.30 16 2 C -0.11 -5.14 4.25 30.60 0.13 -5.01 16 3 C 0.21 10.27 0.84 44.17 0.04 10.31 16 4 H -0.04 -2.01 5.61 -2.39 -0.01 -2.03 16 5 C -0.58 -31.45 6.37 25.60 0.16 -31.29 16 6 H 0.05 2.69 6.58 -2.91 -0.02 2.67 16 7 C -0.03 -1.61 5.20 84.65 0.44 -1.17 16 8 N -0.94 -56.79 13.06 21.45 0.28 -56.51 16 9 Si 1.11 50.58 29.91 68.60 2.05 52.63 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.52 -20.87 3.50 -849.97 -2.98 -23.85 16 14 C 0.05 2.04 5.39 86.30 0.47 2.50 16 15 C -0.13 -3.83 10.02 71.98 0.72 -3.10 16 16 C 0.05 1.81 2.04 44.97 0.09 1.90 16 17 H 0.07 2.27 6.22 -2.39 -0.01 2.26 16 18 C -0.15 -5.28 3.90 30.68 0.12 -5.16 16 19 C -0.14 -3.70 6.08 30.65 0.19 -3.51 16 20 C 0.06 1.41 6.55 86.33 0.57 1.97 16 21 N -0.68 -16.93 6.87 -514.02 -3.53 -20.46 16 22 C 0.06 1.81 4.44 86.32 0.38 2.19 16 23 H 0.07 2.71 5.27 -2.39 -0.01 2.70 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 1.66 7.21 -2.39 -0.02 1.64 16 26 H 0.05 2.22 3.93 -2.39 -0.01 2.21 16 27 H 0.03 1.45 6.19 -2.39 -0.01 1.43 16 28 H 0.26 15.73 5.87 -92.70 -0.54 15.19 16 29 H 0.06 2.84 5.75 -2.39 -0.01 2.82 16 30 H 0.00 0.15 8.02 -2.39 -0.02 0.14 16 31 H 0.06 1.54 6.56 -2.39 -0.02 1.53 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.03 1.17 7.91 -2.39 -0.02 1.15 16 35 H 0.06 2.35 4.37 -2.39 -0.01 2.34 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.35 7.22 8.86 -89.69 -0.79 6.43 16 41 H 0.08 2.82 3.54 -2.38 -0.01 2.81 16 42 H 0.08 2.30 7.88 -2.39 -0.02 2.29 16 Total: -1.00 -60.98 295.12 0.19 -60.79 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.44 Total: 22.08 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.92 Total: -34.68 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -6.23 Total: -100.82 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -60.98 0.19 -60.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251346253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.201 kcal (2) G-P(sol) polarization free energy of solvation -60.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds