Wall clock time and date at job start Mon Mar 30 2020 03:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 H 1.09004 * 109.47340 * 55.27545 * 3 2 1 5 5 C 1.50702 * 109.47376 * 175.27921 * 3 2 1 6 6 H 1.07989 * 120.00246 * 114.33487 * 5 3 2 7 7 C 1.37879 * 119.99487 * 294.33224 * 5 3 2 8 8 N 1.31516 * 119.99627 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00468 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47192 * 89.99437 * 9 7 5 11 11 H 1.48497 * 109.47496 * 209.99774 * 9 7 5 12 12 H 1.48502 * 109.46796 * 329.99770 * 9 7 5 13 13 N 1.46904 * 109.47045 * 295.27619 * 3 2 1 14 14 C 1.46899 * 110.99685 * 86.48075 * 13 3 2 15 15 C 1.53000 * 109.47159 * 71.15201 * 14 13 3 16 16 C 1.46898 * 110.99867 * 322.52725 * 13 3 2 17 17 H 1.08994 * 109.50402 * 57.65544 * 16 13 3 18 18 C 1.53123 * 109.50231 * 177.72944 * 16 13 3 19 19 C 1.53118 * 109.16045 * 177.55489 * 18 16 13 20 20 C 1.53041 * 109.31113 * 302.40997 * 19 18 16 21 21 N 1.46845 * 109.52434 * 59.15188 * 20 19 18 22 22 C 1.46843 * 111.20008 * 298.26253 * 21 20 19 23 23 H 1.08997 * 109.46699 * 73.53473 * 1 2 3 24 24 H 1.09002 * 109.47064 * 193.53400 * 1 2 3 25 25 H 1.08997 * 109.47279 * 313.53561 * 1 2 3 26 26 H 1.09008 * 109.47561 * 239.99998 * 2 1 3 27 27 H 1.09005 * 109.47272 * 119.99937 * 2 1 3 28 28 H 0.97000 * 120.00037 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.47218 * 191.15303 * 14 13 3 30 30 H 1.09002 * 109.47643 * 311.14861 * 14 13 3 31 31 H 1.08993 * 109.47294 * 303.85329 * 15 14 13 32 32 H 1.09002 * 109.47132 * 63.85851 * 15 14 13 33 33 H 1.09009 * 109.46990 * 183.85291 * 15 14 13 34 34 H 1.08998 * 109.52334 * 297.50669 * 18 16 13 35 35 H 1.09003 * 109.51786 * 57.68934 * 18 16 13 36 36 H 1.08998 * 109.50759 * 182.44545 * 19 18 16 37 37 H 1.09002 * 109.50474 * 62.36539 * 19 18 16 38 38 H 1.09001 * 109.45828 * 299.13971 * 20 19 18 39 39 H 1.09000 * 109.45537 * 179.17283 * 20 19 18 40 40 H 1.00905 * 110.99770 * 174.16064 * 21 20 19 41 41 H 1.08997 * 109.46235 * 301.72232 * 22 21 20 42 42 H 1.09008 * 109.45884 * 181.75535 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6092 1.9802 0.8447 5 6 3.5425 1.4442 0.1169 6 1 4.1474 1.8066 -0.7010 7 6 4.1448 0.9829 1.2683 8 7 5.4560 0.9839 1.3702 9 14 3.0985 0.3554 2.6828 10 1 2.8652 -1.1019 2.5175 11 1 3.8030 0.6013 3.9667 12 1 1.7956 1.0678 2.6888 13 7 1.6457 2.1013 -1.2524 14 6 0.2996 2.6791 -1.1421 15 6 0.3420 3.8980 -0.2183 16 6 1.7276 1.1700 -2.3855 17 1 1.0936 0.3048 -2.1920 18 6 1.2562 1.8741 -3.6610 19 6 1.4023 0.9165 -4.8469 20 6 2.8606 0.4654 -4.9564 21 7 3.2623 -0.2030 -3.7121 22 6 3.1764 0.7116 -2.5664 23 1 -0.3632 0.2913 -0.9855 24 1 -0.3633 -0.9991 0.2405 25 1 -0.3634 0.7078 0.7450 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.8797 0.6598 2.1803 29 1 -0.0472 2.9835 -2.1296 30 1 -0.3827 1.9351 -0.7309 31 1 0.7532 3.6073 0.7483 32 1 0.9704 4.6695 -0.6633 33 1 -0.6676 4.2858 -0.0818 34 1 0.2110 2.1635 -3.5523 35 1 1.8649 2.7618 -3.8331 36 1 1.1092 1.4264 -5.7646 37 1 0.7630 0.0471 -4.6935 38 1 3.4977 1.3337 -5.1243 39 1 2.9644 -0.2280 -5.7910 40 1 4.1891 -0.5935 -3.7943 41 1 3.8120 1.5787 -2.7455 42 1 3.5097 0.1970 -1.6651 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251346256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:27 Heat of formation + Delta-G solvation = 18.369928 kcal Electronic energy + Delta-G solvation = -19409.512530 eV Core-core repulsion = 16810.920947 eV Total energy + Delta-G solvation = -2598.591584 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40457 -36.51252 -33.13396 -31.73223 -31.19023 -30.58277 -28.31710 -26.71693 -23.59117 -22.70228 -21.98291 -21.07084 -19.64225 -18.57228 -17.17670 -15.83243 -15.45597 -14.55087 -14.20772 -14.16283 -13.79385 -13.50613 -13.20208 -12.88523 -12.60429 -12.43050 -12.30640 -11.91592 -11.60534 -11.39731 -11.05647 -11.02237 -10.84347 -10.73964 -10.65770 -10.50486 -10.18436 -9.93874 -9.71109 -9.62976 -9.18148 -8.92370 -8.51571 -7.91573 -7.12305 -6.03240 -3.98389 3.28155 3.39105 3.39293 4.42616 4.51129 4.96887 5.21182 5.27842 5.32739 5.38510 5.62743 5.75391 5.79183 5.83500 5.87160 5.92130 5.98290 6.02423 6.10713 6.12409 6.17508 6.28392 6.33158 6.42427 6.49992 6.52570 6.54869 6.63611 6.74887 6.82905 6.84260 6.98068 7.09700 7.33206 7.56938 7.75911 7.88166 8.05619 8.22892 8.73118 9.06517 9.59736 11.09020 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.010342 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.756108 B = 2706.698496 C = 3273.324719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.168 4.168 3 C 0.182 3.818 4 H 0.040 0.960 5 C -0.494 4.494 6 H 0.087 0.913 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.266 1.266 13 N -0.516 5.516 14 C 0.027 3.973 15 C -0.144 4.144 16 C 0.093 3.907 17 H 0.049 0.951 18 C -0.120 4.120 19 C -0.113 4.113 20 C 0.057 3.943 21 N -0.696 5.696 22 C 0.059 3.941 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.262 0.738 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.340 0.660 41 H 0.033 0.967 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 -0.034 -8.322 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C 0.074 3.926 4 H 0.058 0.942 5 C -0.532 4.532 6 H 0.105 0.895 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.223 1.223 12 H -0.191 1.191 13 N -0.240 5.240 14 C -0.101 4.101 15 C -0.201 4.201 16 C -0.016 4.016 17 H 0.067 0.933 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.073 4.073 21 N -0.327 5.327 22 C -0.069 4.069 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.157 0.843 41 H 0.051 0.949 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.244 0.059 -8.170 12.337 hybrid contribution -0.253 -0.470 0.896 1.043 sum -9.497 -0.411 -7.273 11.969 Atomic orbital electron populations 1.22134 0.98447 1.00105 1.00721 1.22715 0.93246 1.02517 1.02228 1.19900 0.96892 0.87910 0.87853 0.94209 1.21095 0.88902 1.40796 1.02425 0.89521 1.24912 0.94656 0.95730 0.97879 1.69878 1.08470 1.47592 1.27933 0.87020 0.80961 0.79363 0.82261 1.20583 1.22306 1.19140 1.62196 1.22853 1.34584 1.04357 1.22466 0.91634 0.96719 0.99267 1.21757 0.99832 0.98096 1.00449 1.21505 0.96717 0.93653 0.89709 0.93285 1.21799 1.00590 0.98546 0.94853 1.21539 0.96641 0.99249 0.97743 1.21874 0.95957 0.96743 0.92715 1.60349 1.32005 1.36965 1.03425 1.22463 0.95578 0.94971 0.93877 0.92813 0.94188 0.93357 0.90641 0.92996 0.92770 0.91823 0.94114 0.92302 0.92461 0.93788 0.92386 0.91839 0.92313 0.91739 0.95723 0.91851 0.84265 0.94890 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.05 37.16 0.30 -2.50 16 2 C -0.17 -3.57 4.30 -26.73 -0.11 -3.69 16 3 C 0.18 4.13 1.29 -68.86 -0.09 4.04 16 4 H 0.04 0.96 4.72 -51.93 -0.24 0.71 16 5 C -0.49 -13.16 6.95 -34.44 -0.24 -13.40 16 6 H 0.09 2.52 6.34 -52.49 -0.33 2.19 16 7 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 8 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 9 Si 0.87 21.52 24.69 -169.99 -4.20 17.32 16 10 H -0.28 -6.77 6.86 56.52 0.39 -6.38 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.32 6.38 56.52 0.36 -5.96 16 13 N -0.52 -10.33 4.25 -220.00 -0.93 -11.26 16 14 C 0.03 0.46 5.06 -3.82 -0.02 0.44 16 15 C -0.14 -2.37 10.01 37.16 0.37 -1.99 16 16 C 0.09 1.71 1.41 -67.63 -0.10 1.61 16 17 H 0.05 0.94 4.66 -51.93 -0.24 0.70 16 18 C -0.12 -1.87 4.82 -26.61 -0.13 -2.00 16 19 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 20 C 0.06 0.81 6.55 -3.83 -0.03 0.78 16 21 N -0.70 -11.55 6.84 -113.82 -0.78 -12.32 16 22 C 0.06 1.17 4.09 -3.84 -0.02 1.15 16 23 H 0.05 0.90 5.13 -51.93 -0.27 0.63 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.85 7.49 -51.93 -0.39 0.46 16 26 H 0.08 1.62 4.83 -51.92 -0.25 1.37 16 27 H 0.05 1.19 4.03 -51.93 -0.21 0.98 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.06 0.98 5.47 -51.93 -0.28 0.70 16 30 H 0.04 0.69 4.07 -51.93 -0.21 0.47 16 31 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.34 5.24 8.90 -39.29 -0.35 4.89 16 41 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 42 H 0.12 2.70 4.59 -51.92 -0.24 2.46 16 LS Contribution 288.11 15.07 4.34 4.34 Total: -1.00 -28.13 288.11 -7.75 -35.89 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.64 Total: 7.47 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -0.32 Total: -15.42 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.94 Total: -49.61 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.20 Total: 17.32 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.13 -7.75 -35.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251346256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.259 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds