Wall clock time and date at job start Mon Mar 30 2020 03:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 H 1.09004 * 109.47340 * 55.27545 * 3 2 1 5 5 C 1.50702 * 109.47376 * 175.27921 * 3 2 1 6 6 H 1.07989 * 120.00246 * 114.33487 * 5 3 2 7 7 C 1.37879 * 119.99487 * 294.33224 * 5 3 2 8 8 N 1.31516 * 119.99627 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00468 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47192 * 89.99437 * 9 7 5 11 11 H 1.48497 * 109.47496 * 209.99774 * 9 7 5 12 12 H 1.48502 * 109.46796 * 329.99770 * 9 7 5 13 13 N 1.46904 * 109.47045 * 295.27619 * 3 2 1 14 14 C 1.46899 * 110.99685 * 86.48075 * 13 3 2 15 15 C 1.53000 * 109.47159 * 71.15201 * 14 13 3 16 16 C 1.46898 * 110.99867 * 322.52725 * 13 3 2 17 17 H 1.08994 * 109.50402 * 57.65544 * 16 13 3 18 18 C 1.53123 * 109.50231 * 177.72944 * 16 13 3 19 19 C 1.53118 * 109.16045 * 177.55489 * 18 16 13 20 20 C 1.53041 * 109.31113 * 302.40997 * 19 18 16 21 21 N 1.46845 * 109.52434 * 59.15188 * 20 19 18 22 22 C 1.46843 * 111.20008 * 298.26253 * 21 20 19 23 23 H 1.08997 * 109.46699 * 73.53473 * 1 2 3 24 24 H 1.09002 * 109.47064 * 193.53400 * 1 2 3 25 25 H 1.08997 * 109.47279 * 313.53561 * 1 2 3 26 26 H 1.09008 * 109.47561 * 239.99998 * 2 1 3 27 27 H 1.09005 * 109.47272 * 119.99937 * 2 1 3 28 28 H 0.97000 * 120.00037 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.47218 * 191.15303 * 14 13 3 30 30 H 1.09002 * 109.47643 * 311.14861 * 14 13 3 31 31 H 1.08993 * 109.47294 * 303.85329 * 15 14 13 32 32 H 1.09002 * 109.47132 * 63.85851 * 15 14 13 33 33 H 1.09009 * 109.46990 * 183.85291 * 15 14 13 34 34 H 1.08998 * 109.52334 * 297.50669 * 18 16 13 35 35 H 1.09003 * 109.51786 * 57.68934 * 18 16 13 36 36 H 1.08998 * 109.50759 * 182.44545 * 19 18 16 37 37 H 1.09002 * 109.50474 * 62.36539 * 19 18 16 38 38 H 1.09001 * 109.45828 * 299.13971 * 20 19 18 39 39 H 1.09000 * 109.45537 * 179.17283 * 20 19 18 40 40 H 1.00905 * 110.99770 * 174.16064 * 21 20 19 41 41 H 1.08997 * 109.46235 * 301.72232 * 22 21 20 42 42 H 1.09008 * 109.45884 * 181.75535 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6092 1.9802 0.8447 5 6 3.5425 1.4442 0.1169 6 1 4.1474 1.8066 -0.7010 7 6 4.1448 0.9829 1.2683 8 7 5.4560 0.9839 1.3702 9 14 3.0985 0.3554 2.6828 10 1 2.8652 -1.1019 2.5175 11 1 3.8030 0.6013 3.9667 12 1 1.7956 1.0678 2.6888 13 7 1.6457 2.1013 -1.2524 14 6 0.2996 2.6791 -1.1421 15 6 0.3420 3.8980 -0.2183 16 6 1.7276 1.1700 -2.3855 17 1 1.0936 0.3048 -2.1920 18 6 1.2562 1.8741 -3.6610 19 6 1.4023 0.9165 -4.8469 20 6 2.8606 0.4654 -4.9564 21 7 3.2623 -0.2030 -3.7121 22 6 3.1764 0.7116 -2.5664 23 1 -0.3632 0.2913 -0.9855 24 1 -0.3633 -0.9991 0.2405 25 1 -0.3634 0.7078 0.7450 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.8797 0.6598 2.1803 29 1 -0.0472 2.9835 -2.1296 30 1 -0.3827 1.9351 -0.7309 31 1 0.7532 3.6073 0.7483 32 1 0.9704 4.6695 -0.6633 33 1 -0.6676 4.2858 -0.0818 34 1 0.2110 2.1635 -3.5523 35 1 1.8649 2.7618 -3.8331 36 1 1.1092 1.4264 -5.7646 37 1 0.7630 0.0471 -4.6935 38 1 3.4977 1.3337 -5.1243 39 1 2.9644 -0.2280 -5.7910 40 1 4.1891 -0.5935 -3.7943 41 1 3.8120 1.5787 -2.7455 42 1 3.5097 0.1970 -1.6651 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251346256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:26 Heat of formation + Delta-G solvation = -2.814850 kcal Electronic energy + Delta-G solvation = -19410.431171 eV Core-core repulsion = 16810.920947 eV Total energy + Delta-G solvation = -2599.510225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91875 -37.92252 -34.95617 -33.51688 -32.51792 -31.96607 -29.98041 -28.32315 -25.10818 -24.36032 -23.36691 -22.53604 -21.11212 -20.09550 -19.07521 -17.36464 -17.15643 -16.04052 -15.97653 -15.49524 -15.27090 -14.97511 -14.61093 -14.55036 -14.22295 -13.85094 -13.69986 -13.58165 -13.08432 -12.95357 -12.64735 -12.51639 -12.41489 -12.29073 -12.16323 -11.80525 -11.74182 -11.54158 -11.28962 -11.21917 -10.88448 -10.74550 -10.60706 -9.32625 -8.68587 -8.20123 -6.17237 1.30599 1.35018 1.43468 2.36056 3.07892 3.12914 3.64233 3.97361 4.08879 4.12453 4.26186 4.31917 4.34936 4.42822 4.46896 4.56653 4.61656 4.69246 4.78838 4.85587 4.89870 4.92361 4.98735 5.05575 5.09163 5.12271 5.16390 5.22122 5.22647 5.32619 5.40666 5.47203 5.56464 5.66113 5.75779 6.12208 6.21045 6.53606 6.67120 6.84334 6.87376 7.44052 8.95753 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.010342 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.756108 B = 2706.698496 C = 3273.324719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.165 4.165 3 C 0.189 3.811 4 H 0.032 0.968 5 C -0.481 4.481 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.950 5.950 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.301 1.301 12 H -0.249 1.249 13 N -0.534 5.534 14 C 0.025 3.975 15 C -0.141 4.141 16 C 0.096 3.904 17 H 0.049 0.951 18 C -0.115 4.115 19 C -0.109 4.109 20 C 0.053 3.947 21 N -0.696 5.696 22 C 0.073 3.927 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.090 0.910 40 H 0.343 0.657 41 H 0.000 1.000 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 -0.302 -9.565 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.204 4.204 3 C 0.081 3.919 4 H 0.050 0.950 5 C -0.520 4.520 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.592 5.592 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.228 1.228 12 H -0.173 1.173 13 N -0.259 5.259 14 C -0.102 4.102 15 C -0.199 4.199 16 C -0.012 4.012 17 H 0.067 0.933 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.076 4.076 21 N -0.327 5.327 22 C -0.056 4.056 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.037 0.963 39 H 0.109 0.891 40 H 0.161 0.839 41 H 0.019 0.981 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.580 -0.206 -9.437 15.727 hybrid contribution 0.834 -0.342 1.151 1.462 sum -11.746 -0.548 -8.285 14.384 Atomic orbital electron populations 1.22047 0.95165 1.01572 1.01825 1.22562 0.96119 1.00657 1.01027 1.19630 0.93913 0.89225 0.89145 0.95037 1.21331 0.91243 1.38619 1.00776 0.93425 1.25638 0.95553 0.96584 1.00635 1.70030 1.10378 1.50033 1.28749 0.86077 0.79972 0.79254 0.78797 1.19815 1.22819 1.17289 1.62088 1.25358 1.34860 1.03558 1.22595 0.89902 0.96885 1.00820 1.21749 1.01531 0.97754 0.98856 1.21506 0.95340 0.93753 0.90639 0.93301 1.21770 1.01312 0.98256 0.93929 1.21558 0.95915 0.99128 0.98076 1.22041 0.96511 0.97095 0.91982 1.60367 1.32364 1.36209 1.03788 1.22082 0.96305 0.93566 0.93627 0.91318 0.92267 0.92918 0.91370 0.94756 0.93003 0.89531 0.93072 0.94730 0.93223 0.90469 0.90324 0.93021 0.89283 0.91299 0.96300 0.89140 0.83944 0.98139 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 8.05 71.98 0.58 -4.25 16 2 C -0.16 -6.82 4.30 30.59 0.13 -6.69 16 3 C 0.19 8.59 1.29 44.17 0.06 8.65 16 4 H 0.03 1.50 4.72 -2.39 -0.01 1.49 16 5 C -0.48 -26.74 6.95 25.60 0.18 -26.56 16 6 H 0.05 2.96 6.34 -2.92 -0.02 2.94 16 7 C 0.01 0.71 5.46 84.65 0.46 1.17 16 8 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 9 Si 0.93 45.17 24.69 68.60 1.69 46.86 16 10 H -0.27 -12.76 6.86 99.48 0.68 -12.08 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.25 -11.24 6.38 99.48 0.63 -10.60 16 13 N -0.53 -21.02 4.25 -849.95 -3.61 -24.63 16 14 C 0.03 0.79 5.06 86.30 0.44 1.23 16 15 C -0.14 -4.34 10.01 71.98 0.72 -3.62 16 16 C 0.10 3.43 1.41 44.97 0.06 3.50 16 17 H 0.05 1.77 4.66 -2.39 -0.01 1.76 16 18 C -0.11 -3.27 4.82 30.67 0.15 -3.12 16 19 C -0.11 -2.58 6.09 30.65 0.19 -2.39 16 20 C 0.05 1.39 6.55 86.33 0.57 1.95 16 21 N -0.70 -22.84 6.84 -514.01 -3.52 -26.36 16 22 C 0.07 2.98 4.09 86.32 0.35 3.33 16 23 H 0.07 2.02 5.13 -2.39 -0.01 2.01 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.67 7.49 -2.39 -0.02 1.65 16 26 H 0.07 2.90 4.83 -2.38 -0.01 2.89 16 27 H 0.03 1.53 4.03 -2.38 -0.01 1.52 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.09 2.33 5.47 -2.38 -0.01 2.32 16 30 H 0.05 1.52 4.07 -2.39 -0.01 1.51 16 31 H 0.03 1.21 6.43 -2.39 -0.02 1.20 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.08 1.93 6.17 -2.39 -0.01 1.91 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.34 10.70 8.90 -89.69 -0.80 9.90 16 41 H 0.00 0.02 7.67 -2.39 -0.02 0.00 16 42 H 0.08 3.71 4.59 -2.38 -0.01 3.70 16 Total: -1.00 -63.77 288.11 -1.13 -64.90 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.13 Total: 25.11 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 3.88 Total: -26.82 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -6.83 Total: -110.05 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.69 Total: 46.86 kcal Total: -63.77 -1.13 -64.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251346256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.086 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds