Wall clock time and date at job start Mon Mar 30 2020 03:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46747 * 2 1 4 4 H 1.09002 * 109.47301 * 303.97621 * 3 2 1 5 5 C 1.50706 * 109.47240 * 183.97343 * 3 2 1 6 6 H 1.07995 * 120.00222 * 244.32101 * 5 3 2 7 7 C 1.37882 * 119.99316 * 64.32016 * 5 3 2 8 8 N 1.31513 * 120.00558 * 6.75280 * 7 5 3 9 9 Si 1.86798 * 119.99526 * 187.03271 * 7 5 3 10 10 H 1.48504 * 109.47413 * 179.72216 * 9 7 5 11 11 H 1.48495 * 109.47482 * 299.72365 * 9 7 5 12 12 H 1.48509 * 109.47215 * 59.72319 * 9 7 5 13 13 N 1.46904 * 109.47165 * 63.97612 * 3 2 1 14 14 C 1.46845 * 110.99776 * 209.36181 * 13 3 2 15 15 C 1.53046 * 109.52306 * 174.16114 * 14 13 3 16 16 H 1.08997 * 109.49852 * 299.24236 * 15 14 13 17 17 C 1.53000 * 109.50612 * 179.11812 * 15 14 13 18 18 N 1.46889 * 109.46948 * 175.19560 * 17 15 14 19 19 C 1.53118 * 109.27477 * 59.17678 * 15 14 13 20 20 C 1.53113 * 109.16485 * 302.34666 * 19 15 14 21 21 C 1.46848 * 110.99725 * 85.15626 * 13 3 2 22 22 H 1.08998 * 109.46678 * 65.82594 * 21 13 3 23 23 C 1.52998 * 109.46128 * 305.84910 * 21 13 3 24 24 H 1.09004 * 109.47185 * 184.93166 * 1 2 3 25 25 H 1.08997 * 109.47649 * 304.93067 * 1 2 3 26 26 H 1.08997 * 109.47261 * 64.93379 * 1 2 3 27 27 H 1.09000 * 109.47427 * 240.00297 * 2 1 3 28 28 H 1.08999 * 109.46797 * 119.99663 * 2 1 3 29 29 H 0.97006 * 119.99680 * 355.83277 * 8 7 5 30 30 H 1.09004 * 109.46773 * 294.17456 * 14 13 3 31 31 H 1.09000 * 109.46561 * 54.14498 * 14 13 3 32 32 H 1.08995 * 109.47028 * 295.20198 * 17 15 14 33 33 H 1.09010 * 109.46441 * 55.19711 * 17 15 14 34 34 H 1.00909 * 111.00345 * 180.02562 * 18 17 15 35 35 H 1.00909 * 111.00675 * 303.95460 * 18 17 15 36 36 H 1.09001 * 109.52379 * 182.43949 * 19 15 14 37 37 H 1.09007 * 109.52172 * 62.25840 * 19 15 14 38 38 H 1.08996 * 109.50626 * 297.71756 * 20 19 15 39 39 H 1.09002 * 109.50498 * 177.59239 * 20 19 15 40 40 H 1.09009 * 109.47014 * 68.60282 * 23 21 13 41 41 H 1.08998 * 109.47527 * 188.59700 * 23 21 13 42 42 H 1.09000 * 109.47453 * 308.60631 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6195 1.9765 -0.8522 5 6 3.5437 1.4438 -0.0985 6 1 4.1379 1.8299 0.7165 7 6 4.1609 0.9518 -1.2291 8 7 3.4406 0.6052 -2.2734 9 14 6.0195 0.7704 -1.2745 10 1 6.4309 0.2178 -2.5900 11 1 6.6516 2.0994 -1.0764 12 1 6.4536 -0.1503 -0.1932 13 7 1.6302 2.1067 1.2446 14 6 1.4541 3.5498 1.0376 15 6 0.8892 4.1840 2.3108 16 1 -0.0801 3.7407 2.5388 17 6 0.7265 5.6909 2.1021 18 7 0.0783 6.2812 3.2806 19 6 1.8535 3.9299 3.4727 20 6 2.0574 2.4212 3.6360 21 6 2.5884 1.8382 2.3244 22 1 3.5460 2.2997 2.0833 23 6 2.7747 0.3273 2.4767 24 1 -0.3634 -1.0239 0.0883 25 1 -0.3634 0.5884 0.8425 26 1 -0.3633 0.4354 -0.9308 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.4722 0.6383 -2.2273 30 1 2.4170 4.0032 0.8025 31 1 0.7629 3.7165 0.2113 32 1 1.7067 6.1460 1.9603 33 1 0.1113 5.8712 1.2204 34 1 -0.0410 7.2768 3.1672 35 1 -0.8045 5.8311 3.4714 36 1 1.4346 4.3424 4.3906 37 1 2.8111 4.4063 3.2621 38 1 1.1064 1.9503 3.8849 39 1 2.7761 2.2354 4.4342 40 1 3.2941 -0.0647 1.6022 41 1 3.3631 0.1220 3.3709 42 1 1.7997 -0.1519 2.5653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251347813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:26 Heat of formation + Delta-G solvation = -5.395813 kcal Electronic energy + Delta-G solvation = -19063.023630 eV Core-core repulsion = 16463.401487 eV Total energy + Delta-G solvation = -2599.622144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.13103 -36.09268 -33.85399 -31.69832 -31.41874 -30.55817 -27.17984 -26.11340 -23.43316 -23.14273 -22.29624 -20.55581 -19.43620 -19.16846 -16.60384 -15.84157 -15.13563 -14.58802 -14.43514 -13.92409 -13.75189 -13.70263 -13.25984 -12.65927 -12.62693 -12.16945 -11.87239 -11.58730 -11.46533 -11.25544 -11.12562 -10.95958 -10.72480 -10.44665 -10.26537 -10.17303 -10.03340 -9.85685 -9.78582 -9.51253 -9.03636 -8.84160 -8.64187 -8.20661 -6.96972 -6.30599 -4.05818 3.41695 3.43000 3.61218 4.51227 4.55201 4.89668 5.21917 5.31631 5.36990 5.42645 5.65402 5.74283 5.90050 5.98696 6.09918 6.15252 6.20284 6.29558 6.34008 6.36708 6.45347 6.48119 6.53472 6.55263 6.60447 6.75198 6.80871 6.93058 7.00451 7.10374 7.12087 7.22913 7.26888 7.41203 7.47993 7.59125 7.97697 8.18578 8.44536 8.60786 8.86425 9.65883 11.02854 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.007995 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.528630 B = 3501.400892 C = 3711.682700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.203 3.797 4 H 0.020 0.980 5 C -0.623 4.623 6 H 0.060 0.940 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 1.058 2.942 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.287 1.287 13 N -0.523 5.523 14 C 0.069 3.931 15 C -0.080 4.080 16 H 0.068 0.932 17 C 0.066 3.934 18 N -0.849 5.849 19 C -0.100 4.100 20 C -0.116 4.116 21 C 0.094 3.906 22 H 0.048 0.952 23 C -0.148 4.148 24 H 0.027 0.973 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.273 0.727 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.336 0.664 35 H 0.338 0.662 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.033 0.967 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 5.632 9.063 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.096 3.904 4 H 0.038 0.962 5 C -0.661 4.661 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.546 5.546 9 Si 0.887 3.113 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.214 1.214 13 N -0.248 5.248 14 C -0.060 4.060 15 C -0.099 4.099 16 H 0.087 0.913 17 C -0.065 4.065 18 N -0.377 5.377 19 C -0.138 4.138 20 C -0.154 4.154 21 C -0.015 4.015 22 H 0.066 0.934 23 C -0.205 4.205 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.637 4.738 8.599 10.469 hybrid contribution -1.250 1.104 -0.054 1.668 sum -4.887 5.842 8.545 11.446 Atomic orbital electron populations 1.21714 0.98628 0.98859 1.00586 1.22130 0.92915 0.99743 1.02218 1.19303 0.94057 0.90715 0.86289 0.96200 1.22597 0.92307 1.45513 1.05712 0.92201 1.25638 1.06436 0.93834 0.92069 1.70787 1.08399 1.45814 1.29625 0.83689 0.75050 0.76449 0.76068 1.20869 1.21731 1.21393 1.62260 1.46644 1.07802 1.08063 1.21860 0.98880 0.89986 0.95268 1.21184 0.99685 0.92892 0.96189 0.91316 1.21825 0.98830 0.95564 0.90312 1.58717 1.29841 1.07845 1.41339 1.21447 0.98521 0.95883 0.97959 1.21743 1.00708 0.95434 0.97501 1.21382 0.94448 0.95766 0.89887 0.93396 1.22220 1.00780 0.95884 1.01586 0.95353 0.92597 0.94765 0.92254 0.91240 0.91505 0.95136 0.92430 0.91251 0.95792 0.85250 0.85024 0.91857 0.93045 0.92257 0.92842 0.89090 0.94839 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.85 37.16 0.37 -2.42 16 2 C -0.13 -3.00 4.77 -26.73 -0.13 -3.13 16 3 C 0.20 4.87 1.29 -68.86 -0.09 4.79 16 4 H 0.02 0.54 7.16 -51.93 -0.37 0.17 16 5 C -0.62 -16.37 6.27 -34.44 -0.22 -16.59 16 6 H 0.06 1.59 5.12 -52.49 -0.27 1.32 16 7 C 0.03 0.70 5.21 -17.82 -0.09 0.61 16 8 N -0.91 -26.55 13.04 55.43 0.72 -25.83 16 9 Si 1.06 24.77 29.91 -169.99 -5.08 19.68 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.52 -10.82 3.72 -220.13 -0.82 -11.64 16 14 C 0.07 1.32 4.61 -3.83 -0.02 1.30 16 15 C -0.08 -1.24 2.49 -90.54 -0.23 -1.46 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.07 0.87 6.18 -3.83 -0.02 0.84 16 18 N -0.85 -9.37 9.13 -10.37 -0.09 -9.47 16 19 C -0.10 -1.56 5.14 -26.61 -0.14 -1.69 16 20 C -0.12 -1.91 5.36 -26.65 -0.14 -2.05 16 21 C 0.09 1.85 1.81 -67.72 -0.12 1.73 16 22 H 0.05 1.07 5.91 -51.93 -0.31 0.76 16 23 C -0.15 -2.88 7.30 37.16 0.27 -2.61 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 1.09 7.59 -51.93 -0.39 0.69 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.50 6.07 -51.93 -0.31 1.19 16 28 H 0.07 1.55 3.81 -51.93 -0.20 1.35 16 29 H 0.27 7.94 5.80 -40.82 -0.24 7.71 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.31 8.14 -51.92 -0.42 -0.12 16 34 H 0.34 3.04 9.08 -39.29 -0.36 2.68 16 35 H 0.34 3.38 8.99 -39.29 -0.35 3.03 16 36 H 0.06 0.92 7.83 -51.93 -0.41 0.52 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 2.03 4.80 -51.92 -0.25 1.78 16 41 H 0.03 0.57 8.13 -51.93 -0.42 0.15 16 42 H 0.05 0.97 7.10 -51.93 -0.37 0.60 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -27.80 305.97 -8.48 -36.28 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.26 Total: 7.05 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -0.56 Total: -20.69 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.19 Total: -46.93 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.80 -8.48 -36.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251347813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.880 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds