Wall clock time and date at job start Mon Mar 30 2020 03:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.08998 * 109.47259 * 305.22722 * 3 2 1 5 5 C 1.50696 * 109.47357 * 185.21919 * 3 2 1 6 6 H 1.08000 * 120.00342 * 245.32569 * 5 3 2 7 7 C 1.37878 * 119.99515 * 65.32976 * 5 3 2 8 8 N 1.31515 * 120.00528 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46874 * 90.00306 * 9 7 5 11 11 H 1.48508 * 109.47059 * 209.99846 * 9 7 5 12 12 H 1.48490 * 109.47308 * 330.00112 * 9 7 5 13 13 N 1.46904 * 109.46961 * 65.22180 * 3 2 1 14 14 C 1.46849 * 110.99602 * 70.58695 * 13 3 2 15 15 C 1.53041 * 109.51869 * 185.84155 * 14 13 3 16 16 H 1.08998 * 109.53883 * 60.78329 * 15 14 13 17 17 C 1.53006 * 109.49934 * 180.88083 * 15 14 13 18 18 N 1.46908 * 109.46844 * 184.80369 * 17 15 14 19 19 C 1.53117 * 109.28009 * 300.81903 * 15 14 13 20 20 C 1.53126 * 109.15811 * 57.65504 * 19 15 14 21 21 C 1.46840 * 111.00306 * 194.79952 * 13 3 2 22 22 H 1.09003 * 109.46629 * 54.14078 * 21 13 3 23 23 C 1.53003 * 109.45339 * 294.17268 * 21 13 3 24 24 H 1.08992 * 109.47482 * 299.99481 * 1 2 3 25 25 H 1.09004 * 109.47674 * 59.99910 * 1 2 3 26 26 H 1.09001 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46888 * 240.00370 * 2 1 3 28 28 H 1.08995 * 109.47454 * 120.00148 * 2 1 3 29 29 H 0.96998 * 119.99995 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.46632 * 65.82590 * 14 13 3 31 31 H 1.09000 * 109.46209 * 305.85001 * 14 13 3 32 32 H 1.09000 * 109.47340 * 304.80094 * 17 15 14 33 33 H 1.08992 * 109.47181 * 64.80500 * 17 15 14 34 34 H 1.00895 * 110.99697 * 180.02562 * 18 17 15 35 35 H 1.00906 * 110.99694 * 303.94910 * 18 17 15 36 36 H 1.09001 * 109.52108 * 297.75380 * 19 15 14 37 37 H 1.08999 * 109.52358 * 177.56070 * 19 15 14 38 38 H 1.09004 * 109.49955 * 182.40160 * 20 19 15 39 39 H 1.09006 * 109.49728 * 62.29121 * 20 19 15 40 40 H 1.09004 * 109.47165 * 307.56368 * 23 21 13 41 41 H 1.09003 * 109.47156 * 67.55859 * 23 21 13 42 42 H 1.08999 * 109.47238 * 187.56242 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 -0.8394 5 6 3.5414 1.4445 -0.1292 6 1 4.1528 1.8098 0.6826 7 6 4.1344 0.9802 -1.2841 8 7 3.3899 0.5360 -2.2730 9 14 5.9956 0.9833 -1.4446 10 1 6.5378 -0.3052 -0.9436 11 1 6.3691 1.1561 -2.8716 12 1 6.5594 2.1014 -0.6465 13 7 1.6559 2.0976 1.2575 14 6 2.4220 1.5571 2.3878 15 6 1.8961 2.1552 3.6946 16 1 0.8471 1.8876 3.8219 17 6 2.7089 1.6085 4.8700 18 7 2.1317 2.0921 6.1314 19 6 2.0323 3.6794 3.6439 20 6 1.2656 4.2124 2.4303 21 6 1.8096 3.5547 1.1602 22 1 1.2562 3.9214 0.2957 23 6 3.2914 3.9013 1.0013 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8072 0.2090 -3.0853 30 1 3.4747 1.8135 2.2688 31 1 2.3131 0.4729 2.4149 32 1 2.6842 0.5189 4.8533 33 1 3.7407 1.9499 4.7881 34 1 2.6515 1.7449 6.9234 35 1 2.0841 3.1000 6.1443 36 1 3.0850 3.9483 3.5565 37 1 1.6191 4.1126 4.5548 38 1 1.3941 5.2928 2.3645 39 1 0.2066 3.9772 2.5371 40 1 3.8641 3.4204 1.7944 41 1 3.6452 3.5484 0.0326 42 1 3.4206 4.9818 1.0638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251347814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:29 Heat of formation + Delta-G solvation = -8.659302 kcal Electronic energy + Delta-G solvation = -19152.235978 eV Core-core repulsion = 16552.472319 eV Total energy + Delta-G solvation = -2599.763659 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.30020 -35.71135 -33.89550 -31.83188 -30.74776 -30.35099 -26.98609 -26.50799 -24.06482 -23.29296 -22.40350 -20.54308 -19.20709 -17.90773 -16.42026 -15.98332 -15.19859 -14.80104 -14.33127 -14.09700 -13.59121 -13.37278 -13.09627 -12.85584 -12.44872 -12.29120 -11.82900 -11.59086 -11.35942 -11.24219 -11.10292 -10.98337 -10.77011 -10.55466 -10.27973 -10.07666 -9.99996 -9.86499 -9.48799 -9.44367 -9.19081 -8.84634 -8.59622 -8.33766 -7.01689 -5.97709 -4.05371 3.25854 3.33802 3.35591 4.40153 4.65046 5.06631 5.19488 5.27517 5.31870 5.43662 5.70981 5.83068 5.92099 6.00483 6.16284 6.21816 6.24593 6.34915 6.37160 6.41787 6.49880 6.51367 6.59907 6.69685 6.70929 6.82969 6.89570 7.05387 7.17065 7.21998 7.23883 7.39964 7.44477 7.48755 7.65010 7.79899 8.00979 8.21067 8.38429 8.55180 9.02430 9.57637 11.03408 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.008658 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.666713 B = 3233.053270 C = 3522.999080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.040 0.960 5 C -0.539 4.539 6 H 0.067 0.933 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.527 5.527 14 C 0.067 3.933 15 C -0.084 4.084 16 H 0.078 0.922 17 C 0.066 3.934 18 N -0.851 5.851 19 C -0.112 4.112 20 C -0.109 4.109 21 C 0.091 3.909 22 H 0.067 0.933 23 C -0.184 4.184 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.335 0.665 35 H 0.337 0.663 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 4.240 10.208 11.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C 0.107 3.893 4 H 0.058 0.942 5 C -0.578 4.578 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.250 5.250 14 C -0.062 4.062 15 C -0.104 4.104 16 H 0.096 0.904 17 C -0.065 4.065 18 N -0.380 5.380 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.018 4.018 22 H 0.085 0.915 23 C -0.242 4.242 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.918 3.656 9.855 10.909 hybrid contribution 2.974 0.571 -0.217 3.036 sum 0.056 4.226 9.637 10.523 Atomic orbital electron populations 1.21704 0.98805 0.98384 1.00655 1.21508 0.92357 0.99305 1.01075 1.19270 0.93175 0.91013 0.85845 0.94240 1.21967 0.92960 1.41613 1.01222 0.91527 1.24920 0.97369 0.95312 0.96032 1.69917 1.34634 1.42222 1.05630 0.86782 0.86769 0.78340 0.77233 1.20798 1.21313 1.20071 1.62472 1.54804 1.02316 1.05423 1.21904 0.96466 0.98805 0.89055 1.21256 1.00559 0.94660 0.93900 0.90397 1.21818 0.95332 0.99998 0.89321 1.58786 1.59657 1.15363 1.04234 1.21593 0.99981 0.95823 0.97525 1.21598 0.99801 0.98261 0.95018 1.21395 0.94731 0.89674 0.95987 0.91476 1.22820 0.98272 0.98237 1.04895 0.93161 0.94298 0.95715 0.90146 0.94935 0.93008 0.93881 0.91578 0.91164 0.95942 0.85394 0.84985 0.92705 0.93117 0.92903 0.91998 0.93171 0.88779 0.95546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.45 16 2 C -0.10 -2.42 5.28 -26.73 -0.14 -2.56 16 3 C 0.21 5.07 1.55 -68.86 -0.11 4.97 16 4 H 0.04 1.06 7.89 -51.93 -0.41 0.65 16 5 C -0.54 -13.65 5.15 -34.44 -0.18 -13.83 16 6 H 0.07 1.68 4.27 -52.49 -0.22 1.46 16 7 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.56 11.71 55.43 0.65 -23.91 16 9 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.53 -10.73 4.03 -220.15 -0.89 -11.62 16 14 C 0.07 1.26 3.78 -3.83 -0.01 1.25 16 15 C -0.08 -1.33 2.56 -90.54 -0.23 -1.56 16 16 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 17 C 0.07 0.91 6.25 -3.82 -0.02 0.89 16 18 N -0.85 -10.00 9.62 -10.36 -0.10 -10.10 16 19 C -0.11 -1.62 4.69 -26.61 -0.12 -1.75 16 20 C -0.11 -1.70 5.61 -26.65 -0.15 -1.85 16 21 C 0.09 1.72 2.91 -67.73 -0.20 1.52 16 22 H 0.07 1.32 7.97 -51.93 -0.41 0.91 16 23 C -0.18 -3.56 7.00 37.16 0.26 -3.30 16 24 H 0.05 0.99 7.76 -51.93 -0.40 0.59 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 2.10 6.41 -51.93 -0.33 1.76 16 28 H 0.03 0.74 6.42 -51.93 -0.33 0.41 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.04 0.89 4.39 -51.93 -0.23 0.66 16 31 H 0.07 1.33 6.35 -51.93 -0.33 1.00 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.33 3.25 9.08 -39.29 -0.36 2.89 16 35 H 0.34 3.64 7.30 -39.29 -0.29 3.36 16 36 H 0.05 0.82 6.73 -51.93 -0.35 0.47 16 37 H 0.05 0.65 6.80 -51.93 -0.35 0.30 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.98 4.45 -51.93 -0.23 0.75 16 41 H 0.09 2.12 5.63 -51.93 -0.29 1.83 16 42 H 0.03 0.45 8.13 -51.93 -0.42 0.03 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -26.27 301.00 -8.52 -34.79 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.06 Total: 7.60 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -0.64 Total: -17.02 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.34 Total: -45.64 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.27 -8.52 -34.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251347814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.131 kcal (2) G-P(sol) polarization free energy of solvation -26.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds