Wall clock time and date at job start Mon Mar 30 2020 03:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.08998 * 109.47259 * 305.22722 * 3 2 1 5 5 C 1.50696 * 109.47357 * 185.21919 * 3 2 1 6 6 H 1.08000 * 120.00342 * 245.32569 * 5 3 2 7 7 C 1.37878 * 119.99515 * 65.32976 * 5 3 2 8 8 N 1.31515 * 120.00528 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46874 * 90.00306 * 9 7 5 11 11 H 1.48508 * 109.47059 * 209.99846 * 9 7 5 12 12 H 1.48490 * 109.47308 * 330.00112 * 9 7 5 13 13 N 1.46904 * 109.46961 * 65.22180 * 3 2 1 14 14 C 1.46849 * 110.99602 * 70.58695 * 13 3 2 15 15 C 1.53041 * 109.51869 * 185.84155 * 14 13 3 16 16 H 1.08998 * 109.53883 * 60.78329 * 15 14 13 17 17 C 1.53006 * 109.49934 * 180.88083 * 15 14 13 18 18 N 1.46908 * 109.46844 * 184.80369 * 17 15 14 19 19 C 1.53117 * 109.28009 * 300.81903 * 15 14 13 20 20 C 1.53126 * 109.15811 * 57.65504 * 19 15 14 21 21 C 1.46840 * 111.00306 * 194.79952 * 13 3 2 22 22 H 1.09003 * 109.46629 * 54.14078 * 21 13 3 23 23 C 1.53003 * 109.45339 * 294.17268 * 21 13 3 24 24 H 1.08992 * 109.47482 * 299.99481 * 1 2 3 25 25 H 1.09004 * 109.47674 * 59.99910 * 1 2 3 26 26 H 1.09001 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46888 * 240.00370 * 2 1 3 28 28 H 1.08995 * 109.47454 * 120.00148 * 2 1 3 29 29 H 0.96998 * 119.99995 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.46632 * 65.82590 * 14 13 3 31 31 H 1.09000 * 109.46209 * 305.85001 * 14 13 3 32 32 H 1.09000 * 109.47340 * 304.80094 * 17 15 14 33 33 H 1.08992 * 109.47181 * 64.80500 * 17 15 14 34 34 H 1.00895 * 110.99697 * 180.02562 * 18 17 15 35 35 H 1.00906 * 110.99694 * 303.94910 * 18 17 15 36 36 H 1.09001 * 109.52108 * 297.75380 * 19 15 14 37 37 H 1.08999 * 109.52358 * 177.56070 * 19 15 14 38 38 H 1.09004 * 109.49955 * 182.40160 * 20 19 15 39 39 H 1.09006 * 109.49728 * 62.29121 * 20 19 15 40 40 H 1.09004 * 109.47165 * 307.56368 * 23 21 13 41 41 H 1.09003 * 109.47156 * 67.55859 * 23 21 13 42 42 H 1.08999 * 109.47238 * 187.56242 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 -0.8394 5 6 3.5414 1.4445 -0.1292 6 1 4.1528 1.8098 0.6826 7 6 4.1344 0.9802 -1.2841 8 7 3.3899 0.5360 -2.2730 9 14 5.9956 0.9833 -1.4446 10 1 6.5378 -0.3052 -0.9436 11 1 6.3691 1.1561 -2.8716 12 1 6.5594 2.1014 -0.6465 13 7 1.6559 2.0976 1.2575 14 6 2.4220 1.5571 2.3878 15 6 1.8961 2.1552 3.6946 16 1 0.8471 1.8876 3.8219 17 6 2.7089 1.6085 4.8700 18 7 2.1317 2.0921 6.1314 19 6 2.0323 3.6794 3.6439 20 6 1.2656 4.2124 2.4303 21 6 1.8096 3.5547 1.1602 22 1 1.2562 3.9214 0.2957 23 6 3.2914 3.9013 1.0013 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8072 0.2090 -3.0853 30 1 3.4747 1.8135 2.2688 31 1 2.3131 0.4729 2.4149 32 1 2.6842 0.5189 4.8533 33 1 3.7407 1.9499 4.7881 34 1 2.6515 1.7449 6.9234 35 1 2.0841 3.1000 6.1443 36 1 3.0850 3.9483 3.5565 37 1 1.6191 4.1126 4.5548 38 1 1.3941 5.2928 2.3645 39 1 0.2066 3.9772 2.5371 40 1 3.8641 3.4204 1.7944 41 1 3.6452 3.5484 0.0326 42 1 3.4206 4.9818 1.0638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251347814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:28 Heat of formation + Delta-G solvation = -25.823602 kcal Electronic energy + Delta-G solvation = -19152.980278 eV Core-core repulsion = 16552.472319 eV Total energy + Delta-G solvation = -2600.507959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81975 -37.15388 -35.39382 -33.76001 -32.09008 -31.87790 -28.50334 -28.38153 -25.42571 -24.85800 -24.08752 -21.91957 -20.94389 -19.41944 -18.33026 -17.31134 -16.60975 -16.41993 -15.85952 -15.50619 -15.04458 -14.85353 -14.78699 -14.28848 -14.03197 -13.78721 -13.44042 -13.02677 -13.00000 -12.96029 -12.83618 -12.61977 -12.42488 -12.23544 -11.93515 -11.68004 -11.60759 -11.40144 -11.24008 -10.98227 -10.83638 -10.63799 -10.36097 -9.54888 -8.77302 -7.98348 -6.13312 1.35921 1.38966 1.45794 2.42209 3.21520 3.38700 3.84020 3.94383 4.01886 4.16560 4.46173 4.49714 4.58173 4.61499 4.69262 4.74427 4.80049 4.81878 4.90804 4.94637 4.98322 5.04512 5.12953 5.20821 5.25011 5.31960 5.42388 5.44599 5.47928 5.59863 5.61763 5.67392 5.81075 5.84673 6.07753 6.28321 6.30262 6.49683 6.67660 6.82647 7.04937 7.52255 8.98712 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.008658 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.666713 B = 3233.053270 C = 3522.999080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.532 4.532 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.936 3.064 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.526 5.526 14 C 0.072 3.928 15 C -0.075 4.075 16 H 0.069 0.931 17 C 0.073 3.927 18 N -0.851 5.851 19 C -0.106 4.106 20 C -0.101 4.101 21 C 0.086 3.914 22 H 0.052 0.948 23 C -0.173 4.173 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.258 0.742 30 H 0.027 0.973 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.349 0.651 35 H 0.345 0.655 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 5.269 12.531 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.138 4.138 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.571 4.571 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.763 3.237 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.249 5.249 14 C -0.057 4.057 15 C -0.094 4.094 16 H 0.088 0.912 17 C -0.058 4.058 18 N -0.382 5.382 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.024 4.024 22 H 0.070 0.930 23 C -0.231 4.231 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.905 4.697 12.209 13.400 hybrid contribution 2.944 0.278 -0.922 3.097 sum 0.039 4.974 11.288 12.335 Atomic orbital electron populations 1.21559 0.96429 0.99688 1.00602 1.21362 0.94461 0.98549 0.99423 1.19015 0.92147 0.91121 0.86399 0.98052 1.22201 0.93932 1.40137 1.00853 0.91471 1.25575 1.00935 0.95618 0.96090 1.70045 1.35975 1.43640 1.06045 0.85902 0.82570 0.78316 0.76938 1.20612 1.21503 1.19480 1.62426 1.54820 1.03326 1.04288 1.21866 0.95474 0.98093 0.90252 1.21120 1.00048 0.95603 0.92614 0.91226 1.21640 0.95037 0.99626 0.89503 1.58710 1.59710 1.16065 1.03759 1.21568 0.99936 0.94649 0.98199 1.21541 0.99781 0.99232 0.93320 1.21511 0.94465 0.88756 0.97624 0.93009 1.22626 0.98391 0.99632 1.02494 0.92364 0.95046 0.93731 0.93259 0.94958 0.93327 0.95533 0.93165 0.91776 0.95800 0.83824 0.84064 0.92815 0.90275 0.90679 0.91776 0.93301 0.92569 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.80 71.98 0.71 -4.40 16 2 C -0.10 -4.74 5.28 30.59 0.16 -4.58 16 3 C 0.22 10.80 1.55 44.17 0.07 10.86 16 4 H 0.00 0.08 7.89 -2.39 -0.02 0.07 16 5 C -0.53 -27.61 5.15 25.60 0.13 -27.48 16 6 H 0.07 3.43 4.27 -2.91 -0.01 3.42 16 7 C 0.02 0.91 5.30 84.65 0.45 1.36 16 8 N -0.92 -52.61 11.71 21.45 0.25 -52.36 16 9 Si 0.94 43.32 29.54 68.60 2.03 45.35 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.53 -21.42 4.03 -850.41 -3.43 -24.85 16 14 C 0.07 2.69 3.78 86.33 0.33 3.02 16 15 C -0.07 -2.18 2.56 -10.74 -0.03 -2.21 16 16 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 17 C 0.07 1.84 6.25 86.30 0.54 2.38 16 18 N -0.85 -17.20 9.62 -186.70 -1.80 -19.00 16 19 C -0.11 -2.73 4.69 30.68 0.14 -2.58 16 20 C -0.10 -2.87 5.61 30.65 0.17 -2.70 16 21 C 0.09 3.16 2.91 44.94 0.13 3.29 16 22 H 0.05 2.06 7.97 -2.39 -0.02 2.04 16 23 C -0.17 -6.57 7.00 71.98 0.50 -6.07 16 24 H 0.06 2.25 7.76 -2.39 -0.02 2.24 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 2.66 6.41 -2.38 -0.02 2.64 16 28 H 0.03 1.50 6.42 -2.39 -0.02 1.49 16 29 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.03 1.09 4.39 -2.39 -0.01 1.08 16 31 H 0.05 2.02 6.35 -2.39 -0.02 2.00 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.35 5.63 9.08 -89.70 -0.81 4.82 16 35 H 0.35 6.09 7.30 -89.69 -0.66 5.44 16 36 H 0.05 1.43 6.73 -2.39 -0.02 1.41 16 37 H 0.08 1.65 6.80 -2.39 -0.02 1.64 16 38 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.05 1.85 4.45 -2.39 -0.01 1.84 16 41 H 0.06 2.56 5.63 -2.39 -0.01 2.55 16 42 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 Total: -1.00 -57.43 301.00 -0.10 -57.52 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.46 Total: 22.44 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 3.31 Total: -29.11 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.97 Total: -96.21 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -57.43 -0.10 -57.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251347814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.701 kcal (2) G-P(sol) polarization free energy of solvation -57.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds