Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47409 * 2 1 4 4 H 1.09000 * 109.47283 * 305.98690 * 3 2 1 5 5 C 1.50697 * 109.47360 * 185.98574 * 3 2 1 6 6 H 1.08000 * 120.00116 * 239.99906 * 5 3 2 7 7 C 1.37877 * 120.00155 * 60.00196 * 5 3 2 8 8 N 1.31523 * 119.99626 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00277 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47298 * 120.00195 * 9 7 5 12 12 H 1.48504 * 109.46847 * 240.00058 * 9 7 5 13 13 N 1.46906 * 109.47019 * 65.98607 * 3 2 1 14 14 C 1.46905 * 110.99641 * 39.70248 * 13 3 2 15 15 C 1.46902 * 110.99675 * 275.75062 * 13 3 2 16 16 H 1.08996 * 109.50211 * 50.44612 * 15 13 3 17 17 C 1.53125 * 109.49877 * 170.52034 * 15 13 3 18 18 C 1.53119 * 109.16018 * 177.59085 * 17 15 13 19 19 C 1.53042 * 109.28088 * 302.35209 * 18 17 15 20 20 N 1.46844 * 109.52404 * 59.17535 * 19 18 17 21 21 C 1.46901 * 111.00096 * 174.16339 * 20 19 18 22 22 C 1.46852 * 111.19920 * 298.26146 * 20 19 18 23 23 H 1.09003 * 109.46969 * 46.61697 * 1 2 3 24 24 H 1.09005 * 109.47392 * 166.61692 * 1 2 3 25 25 H 1.09001 * 109.47214 * 286.61900 * 1 2 3 26 26 H 1.09002 * 109.47287 * 240.00065 * 2 1 3 27 27 H 1.09000 * 109.47134 * 120.00484 * 2 1 3 28 28 H 0.96995 * 119.99796 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47243 * 60.00382 * 14 13 3 30 30 H 1.08999 * 109.46760 * 180.02562 * 14 13 3 31 31 H 1.08997 * 109.46870 * 299.99950 * 14 13 3 32 32 H 1.08995 * 109.52417 * 297.50313 * 17 15 13 33 33 H 1.09003 * 109.51903 * 57.69005 * 17 15 13 34 34 H 1.09004 * 109.49744 * 62.28918 * 18 17 15 35 35 H 1.08998 * 109.50320 * 182.40889 * 18 17 15 36 36 H 1.08994 * 109.46202 * 179.19802 * 19 18 17 37 37 H 1.09006 * 109.45722 * 299.17283 * 19 18 17 38 38 H 1.08998 * 109.46918 * 56.04470 * 21 20 19 39 39 H 1.08992 * 109.47256 * 176.04324 * 21 20 19 40 40 H 1.09000 * 109.46722 * 296.05031 * 21 20 19 41 41 H 1.09005 * 109.46160 * 301.72796 * 22 20 19 42 42 H 1.09000 * 109.46165 * 181.76081 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5918 1.9864 -0.8315 5 6 3.5397 1.4450 -0.1482 6 1 4.1575 1.8852 0.6206 7 6 4.1231 0.8855 -1.2651 8 7 3.3707 0.3492 -2.2011 9 14 5.9820 0.8881 -1.4485 10 1 6.5950 1.5464 -0.2670 11 1 6.4717 -0.5104 -1.5461 12 1 6.3570 1.6309 -2.6785 13 7 1.6718 2.0920 1.2652 14 6 1.8278 1.1677 2.3963 15 6 0.3040 2.6244 1.2050 16 1 -0.3732 1.8483 0.8486 17 6 -0.1294 3.0791 2.6015 18 6 -1.5321 3.6874 2.5191 19 6 -1.5208 4.8509 1.5250 20 7 -1.1005 4.3644 0.2048 21 6 -1.2105 5.4242 -0.8064 22 6 0.2622 3.8187 0.2491 23 1 -0.3633 0.7059 -0.7469 24 1 -0.3634 -0.9998 -0.2379 25 1 -0.3634 0.2939 0.9847 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.7810 -0.0441 -2.9870 29 1 2.8664 0.8429 2.4595 30 1 1.5482 1.6739 3.3203 31 1 1.1842 0.3006 2.2483 32 1 -0.1426 2.2227 3.2756 33 1 0.5706 3.8267 2.9746 34 1 -2.2387 2.9285 2.1830 35 1 -1.8290 4.0519 3.5025 36 1 -2.5214 5.2772 1.4534 37 1 -0.8241 5.6155 1.8689 38 1 -0.6297 6.2904 -0.4895 39 1 -0.8274 5.0587 -1.7590 40 1 -2.2562 5.7100 -0.9208 41 1 0.9504 4.5882 0.5990 42 1 0.5565 3.4952 -0.7493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251355665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 16.708134 kcal Electronic energy + Delta-G solvation = -19002.944678 eV Core-core repulsion = 16404.281034 eV Total energy + Delta-G solvation = -2598.663645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.26508 -36.83751 -33.39736 -32.17629 -30.75037 -29.31679 -27.44613 -26.17031 -24.76612 -23.10551 -22.26246 -21.12621 -19.27848 -18.78036 -16.37640 -15.71959 -15.15674 -14.85765 -14.35563 -14.18380 -14.05146 -13.40008 -13.07108 -12.93340 -12.60983 -12.37459 -11.97294 -11.67220 -11.61262 -11.21072 -11.16442 -10.93841 -10.78212 -10.76907 -10.58197 -10.46509 -10.26635 -10.08152 -9.89996 -9.57102 -9.33184 -8.83145 -8.27642 -8.03899 -6.92206 -5.94890 -3.97933 3.32637 3.40712 3.45739 4.15250 4.46797 4.98605 5.13920 5.23309 5.32887 5.35766 5.53870 5.63045 5.68240 5.78711 5.94288 5.97654 6.03715 6.08689 6.15536 6.18209 6.21103 6.28371 6.31851 6.35791 6.44939 6.49649 6.65053 6.75243 6.79740 6.93938 7.09157 7.31105 7.35774 7.37024 7.59222 7.79595 7.94090 8.28683 8.48066 8.68331 9.09755 9.66718 11.11196 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027648 B = 0.007352 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.486964 B = 3807.724196 C = 4077.555696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 C 0.215 3.785 4 H 0.039 0.961 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.531 5.531 14 C 0.030 3.970 15 C 0.068 3.932 16 H 0.066 0.934 17 C -0.118 4.118 18 C -0.115 4.115 19 C 0.057 3.943 20 N -0.545 5.545 21 C 0.028 3.972 22 C 0.068 3.932 23 H 0.047 0.953 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.258 0.742 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.021 0.979 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 5.670 6.456 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.109 3.891 4 H 0.056 0.944 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.255 5.255 14 C -0.119 4.119 15 C -0.040 4.040 16 H 0.084 0.916 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.071 4.071 20 N -0.270 5.270 21 C -0.120 4.120 22 C -0.060 4.060 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.115 0.885 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.925 5.609 6.216 12.237 hybrid contribution 1.030 -0.074 -0.147 1.043 sum -7.894 5.535 6.068 11.392 Atomic orbital electron populations 1.22108 0.99496 0.99470 0.99664 1.22253 0.91667 1.02381 1.03020 1.19381 0.95478 0.88712 0.85512 0.94356 1.21206 0.91223 1.36080 1.04560 0.92063 1.24935 0.97949 0.95662 0.95931 1.69893 1.34460 1.39651 1.09468 0.86514 0.85933 0.77464 0.77925 1.19827 1.21258 1.21213 1.62309 1.20457 1.37072 1.05694 1.22342 1.01501 0.94651 0.93357 1.21922 0.92004 0.96418 0.93687 0.91617 1.21780 0.95694 1.00396 0.97762 1.21570 0.97994 0.97926 0.97804 1.22056 0.99570 0.96128 0.89348 1.61870 1.25997 1.33290 1.05837 1.22304 1.00980 0.92771 0.95965 1.22099 0.86603 0.96376 1.00905 0.93358 0.94994 0.94060 0.88463 0.94093 0.93185 0.91620 0.93555 0.95859 0.91952 0.91981 0.91450 0.91988 0.91478 0.95252 0.96002 0.91294 0.91883 0.94621 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.10 37.15 0.30 -2.74 16 2 C -0.15 -3.63 4.72 -26.73 -0.13 -3.75 16 3 C 0.22 5.30 1.77 -68.86 -0.12 5.17 16 4 H 0.04 1.04 5.99 -51.93 -0.31 0.73 16 5 C -0.49 -13.44 8.36 -34.44 -0.29 -13.73 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.89 -25.35 11.29 55.43 0.63 -24.72 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.53 -11.29 4.47 -228.19 -1.02 -12.30 16 14 C 0.03 0.58 7.67 60.07 0.46 1.04 16 15 C 0.07 1.26 1.79 -67.63 -0.12 1.14 16 16 H 0.07 1.28 3.85 -51.93 -0.20 1.08 16 17 C -0.12 -1.82 4.46 -26.60 -0.12 -1.94 16 18 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 19 C 0.06 0.76 5.46 -3.83 -0.02 0.74 16 20 N -0.55 -8.48 4.91 -242.96 -1.19 -9.67 16 21 C 0.03 0.38 9.62 60.07 0.58 0.95 16 22 C 0.07 1.24 4.77 -3.84 -0.02 1.22 16 23 H 0.05 1.00 7.65 -51.93 -0.40 0.61 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.78 5.10 -51.93 -0.27 0.51 16 26 H 0.10 2.60 5.93 -51.93 -0.31 2.29 16 27 H 0.04 0.95 5.99 -51.93 -0.31 0.64 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.35 7.82 -51.93 -0.41 0.94 16 30 H 0.05 0.78 5.99 -51.93 -0.31 0.46 16 31 H 0.02 0.44 5.00 -51.93 -0.26 0.18 16 32 H 0.06 0.92 6.42 -51.93 -0.33 0.59 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.66 6.34 -51.93 -0.33 1.33 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -27.81 303.11 -8.97 -36.78 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.20 Total: 1.04 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 0.27 Total: -12.12 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -1.59 Total: -46.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.81 -8.97 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251355665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.489 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds