Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47409 * 2 1 4 4 H 1.09000 * 109.47283 * 305.98690 * 3 2 1 5 5 C 1.50697 * 109.47360 * 185.98574 * 3 2 1 6 6 H 1.08000 * 120.00116 * 239.99906 * 5 3 2 7 7 C 1.37877 * 120.00155 * 60.00196 * 5 3 2 8 8 N 1.31523 * 119.99626 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00277 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47298 * 120.00195 * 9 7 5 12 12 H 1.48504 * 109.46847 * 240.00058 * 9 7 5 13 13 N 1.46906 * 109.47019 * 65.98607 * 3 2 1 14 14 C 1.46905 * 110.99641 * 39.70248 * 13 3 2 15 15 C 1.46902 * 110.99675 * 275.75062 * 13 3 2 16 16 H 1.08996 * 109.50211 * 50.44612 * 15 13 3 17 17 C 1.53125 * 109.49877 * 170.52034 * 15 13 3 18 18 C 1.53119 * 109.16018 * 177.59085 * 17 15 13 19 19 C 1.53042 * 109.28088 * 302.35209 * 18 17 15 20 20 N 1.46844 * 109.52404 * 59.17535 * 19 18 17 21 21 C 1.46901 * 111.00096 * 174.16339 * 20 19 18 22 22 C 1.46852 * 111.19920 * 298.26146 * 20 19 18 23 23 H 1.09003 * 109.46969 * 46.61697 * 1 2 3 24 24 H 1.09005 * 109.47392 * 166.61692 * 1 2 3 25 25 H 1.09001 * 109.47214 * 286.61900 * 1 2 3 26 26 H 1.09002 * 109.47287 * 240.00065 * 2 1 3 27 27 H 1.09000 * 109.47134 * 120.00484 * 2 1 3 28 28 H 0.96995 * 119.99796 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47243 * 60.00382 * 14 13 3 30 30 H 1.08999 * 109.46760 * 180.02562 * 14 13 3 31 31 H 1.08997 * 109.46870 * 299.99950 * 14 13 3 32 32 H 1.08995 * 109.52417 * 297.50313 * 17 15 13 33 33 H 1.09003 * 109.51903 * 57.69005 * 17 15 13 34 34 H 1.09004 * 109.49744 * 62.28918 * 18 17 15 35 35 H 1.08998 * 109.50320 * 182.40889 * 18 17 15 36 36 H 1.08994 * 109.46202 * 179.19802 * 19 18 17 37 37 H 1.09006 * 109.45722 * 299.17283 * 19 18 17 38 38 H 1.08998 * 109.46918 * 56.04470 * 21 20 19 39 39 H 1.08992 * 109.47256 * 176.04324 * 21 20 19 40 40 H 1.09000 * 109.46722 * 296.05031 * 21 20 19 41 41 H 1.09005 * 109.46160 * 301.72796 * 22 20 19 42 42 H 1.09000 * 109.46165 * 181.76081 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5918 1.9864 -0.8315 5 6 3.5397 1.4450 -0.1482 6 1 4.1575 1.8852 0.6206 7 6 4.1231 0.8855 -1.2651 8 7 3.3707 0.3492 -2.2011 9 14 5.9820 0.8881 -1.4485 10 1 6.5950 1.5464 -0.2670 11 1 6.4717 -0.5104 -1.5461 12 1 6.3570 1.6309 -2.6785 13 7 1.6718 2.0920 1.2652 14 6 1.8278 1.1677 2.3963 15 6 0.3040 2.6244 1.2050 16 1 -0.3732 1.8483 0.8486 17 6 -0.1294 3.0791 2.6015 18 6 -1.5321 3.6874 2.5191 19 6 -1.5208 4.8509 1.5250 20 7 -1.1005 4.3644 0.2048 21 6 -1.2105 5.4242 -0.8064 22 6 0.2622 3.8187 0.2491 23 1 -0.3633 0.7059 -0.7469 24 1 -0.3634 -0.9998 -0.2379 25 1 -0.3634 0.2939 0.9847 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.7810 -0.0441 -2.9870 29 1 2.8664 0.8429 2.4595 30 1 1.5482 1.6739 3.3203 31 1 1.1842 0.3006 2.2483 32 1 -0.1426 2.2227 3.2756 33 1 0.5706 3.8267 2.9746 34 1 -2.2387 2.9285 2.1830 35 1 -1.8290 4.0519 3.5025 36 1 -2.5214 5.2772 1.4534 37 1 -0.8241 5.6155 1.8689 38 1 -0.6297 6.2904 -0.4895 39 1 -0.8274 5.0587 -1.7590 40 1 -2.2562 5.7100 -0.9208 41 1 0.9504 4.5882 0.5990 42 1 0.5565 3.4952 -0.7493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251355665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = -1.720529 kcal Electronic energy + Delta-G solvation = -19003.743805 eV Core-core repulsion = 16404.281034 eV Total energy + Delta-G solvation = -2599.462771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70956 -38.34646 -35.07013 -33.77830 -32.40521 -30.78670 -29.22909 -27.48203 -26.37132 -24.88412 -23.58075 -22.51371 -20.90623 -20.32724 -18.34627 -17.28387 -16.75887 -16.39464 -15.88064 -15.59243 -15.40057 -14.90190 -14.64532 -14.48072 -14.08158 -13.68113 -13.28778 -13.26176 -13.16960 -13.01583 -12.72314 -12.68877 -12.35626 -12.23849 -12.20838 -11.99218 -11.89445 -11.67488 -11.54378 -11.18700 -10.91977 -10.80508 -10.36317 -9.26609 -8.62404 -8.05854 -6.16338 1.40007 1.42241 1.53822 2.44199 2.92521 3.20821 3.59574 3.89201 4.02932 4.15075 4.32573 4.39481 4.46482 4.52014 4.55718 4.59993 4.63476 4.68192 4.75473 4.80944 4.87952 4.89727 4.98527 5.03575 5.06298 5.08822 5.11740 5.20656 5.25925 5.34658 5.41983 5.55196 5.64440 5.78358 5.89236 6.10672 6.22352 6.36220 6.63038 6.85287 6.98651 7.52611 8.98512 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027648 B = 0.007352 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.486964 B = 3807.724196 C = 4077.555696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.224 3.776 4 H 0.006 0.994 5 C -0.509 4.509 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.544 5.544 14 C 0.034 3.966 15 C 0.069 3.931 16 H 0.058 0.942 17 C -0.113 4.113 18 C -0.109 4.109 19 C 0.054 3.946 20 N -0.554 5.554 21 C 0.027 3.973 22 C 0.079 3.921 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.259 0.741 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 6.242 8.076 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C 0.117 3.883 4 H 0.023 0.977 5 C -0.548 4.548 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.268 5.268 14 C -0.114 4.114 15 C -0.040 4.040 16 H 0.076 0.924 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.073 4.073 20 N -0.279 5.279 21 C -0.121 4.121 22 C -0.050 4.050 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.135 6.190 7.849 14.235 hybrid contribution 1.374 -0.205 -0.653 1.535 sum -8.761 5.985 7.196 12.820 Atomic orbital electron populations 1.21937 0.96809 1.00161 1.00375 1.22071 0.94016 1.01209 1.01305 1.19066 0.93875 0.89070 0.86276 0.97659 1.21476 0.92840 1.36066 1.04438 0.93261 1.25647 1.02045 0.95386 0.95686 1.70024 1.36009 1.40117 1.09776 0.85569 0.81032 0.77580 0.77796 1.19534 1.20637 1.20898 1.62201 1.22733 1.37172 1.04689 1.22334 1.00508 0.94784 0.93795 1.21969 0.90075 0.95972 0.95959 0.92407 1.21745 0.97178 1.00800 0.95356 1.21574 0.96113 0.97657 0.99356 1.22198 1.00796 0.96343 0.88002 1.61895 1.23660 1.34603 1.07723 1.22367 1.02635 0.92213 0.94873 1.21847 0.88194 0.96143 0.98781 0.94550 0.93401 0.92213 0.91823 0.93970 0.93179 0.93496 0.90530 0.95510 0.90886 0.92389 0.91467 0.88912 0.88893 0.95278 0.95525 0.92562 0.89275 0.96116 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.10 71.98 0.58 -4.86 16 2 C -0.15 -7.04 4.72 30.59 0.14 -6.89 16 3 C 0.22 11.39 1.77 44.17 0.08 11.47 16 4 H 0.01 0.32 5.99 -2.39 -0.01 0.30 16 5 C -0.51 -28.68 8.36 25.60 0.21 -28.46 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.58 5.29 84.65 0.45 1.03 16 8 N -0.92 -53.52 11.29 21.45 0.24 -53.28 16 9 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 N -0.54 -23.27 4.47 -875.87 -3.91 -27.18 16 14 C 0.03 1.27 7.67 127.69 0.98 2.25 16 15 C 0.07 2.49 1.79 44.97 0.08 2.57 16 16 H 0.06 2.21 3.85 -2.39 -0.01 2.20 16 17 C -0.11 -3.19 4.46 30.68 0.14 -3.05 16 18 C -0.11 -2.46 6.09 30.65 0.19 -2.27 16 19 C 0.05 1.28 5.46 86.33 0.47 1.75 16 20 N -0.55 -16.60 4.91 -922.59 -4.53 -21.13 16 21 C 0.03 0.69 9.62 127.69 1.23 1.92 16 22 C 0.08 2.93 4.77 86.32 0.41 3.35 16 23 H 0.04 1.52 7.65 -2.39 -0.02 1.50 16 24 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.06 2.16 5.10 -2.39 -0.01 2.15 16 26 H 0.06 3.51 5.93 -2.39 -0.01 3.49 16 27 H 0.04 1.97 5.99 -2.39 -0.01 1.96 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.05 1.92 7.82 -2.39 -0.02 1.90 16 30 H 0.08 2.40 5.99 -2.39 -0.01 2.38 16 31 H 0.03 0.98 5.00 -2.39 -0.01 0.97 16 32 H 0.07 1.91 6.42 -2.39 -0.02 1.89 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.77 8.12 -2.39 -0.02 1.75 16 37 H 0.03 0.70 8.14 -2.38 -0.02 0.69 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 1.55 8.02 -2.39 -0.02 1.53 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.04 1.95 6.34 -2.39 -0.02 1.94 16 Total: -1.00 -61.25 303.11 -0.24 -61.49 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.98 Total: 14.51 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.96 Total: -21.19 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -8.20 Total: -101.59 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -61.25 -0.24 -61.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251355665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.767 kcal (2) G-P(sol) polarization free energy of solvation -61.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds