Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47444 * 2 1 4 4 H 1.09005 * 109.47147 * 60.62702 * 3 2 1 5 5 C 1.50702 * 109.47171 * 180.62677 * 3 2 1 6 6 H 1.07995 * 119.99867 * 119.15987 * 5 3 2 7 7 C 1.37873 * 119.99853 * 299.15423 * 5 3 2 8 8 N 1.31522 * 119.99885 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00204 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47004 * 89.99824 * 9 7 5 11 11 H 1.48498 * 109.47218 * 209.99481 * 9 7 5 12 12 H 1.48493 * 109.47227 * 329.99600 * 9 7 5 13 13 N 1.46898 * 109.47123 * 300.62776 * 3 2 1 14 14 C 1.46903 * 111.00110 * 189.96973 * 13 3 2 15 15 C 1.46900 * 110.99926 * 313.92136 * 13 3 2 16 16 H 1.09002 * 109.53652 * 50.81889 * 15 13 3 17 17 C 1.53117 * 109.50655 * 170.92082 * 15 13 3 18 18 C 1.53117 * 109.16303 * 177.59578 * 17 15 13 19 19 C 1.53041 * 109.27957 * 302.34529 * 18 17 15 20 20 N 1.46844 * 109.52161 * 59.17798 * 19 18 17 21 21 C 1.46901 * 110.99981 * 174.16152 * 20 19 18 22 22 C 1.46845 * 111.20175 * 298.26061 * 20 19 18 23 23 H 1.08995 * 109.47227 * 184.53323 * 1 2 3 24 24 H 1.09008 * 109.47000 * 304.53171 * 1 2 3 25 25 H 1.09005 * 109.46960 * 64.52850 * 1 2 3 26 26 H 1.08999 * 109.47284 * 239.99682 * 2 1 3 27 27 H 1.09006 * 109.46876 * 119.99852 * 2 1 3 28 28 H 0.96993 * 120.00185 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46686 * 189.43585 * 14 13 3 30 30 H 1.08997 * 109.47069 * 309.42920 * 14 13 3 31 31 H 1.08994 * 109.47082 * 69.43322 * 14 13 3 32 32 H 1.08997 * 109.52216 * 57.69057 * 17 15 13 33 33 H 1.09000 * 109.51975 * 297.50364 * 17 15 13 34 34 H 1.09000 * 109.50319 * 62.28533 * 18 17 15 35 35 H 1.09004 * 109.50237 * 182.40381 * 18 17 15 36 36 H 1.09002 * 109.46157 * 179.19478 * 19 18 17 37 37 H 1.09003 * 109.45912 * 299.17544 * 19 18 17 38 38 H 1.08999 * 109.46695 * 56.04758 * 21 20 19 39 39 H 1.09004 * 109.47119 * 176.04791 * 21 20 19 40 40 H 1.09003 * 109.46739 * 296.04621 * 21 20 19 41 41 H 1.09002 * 109.46574 * 181.76087 * 22 20 19 42 42 H 1.09002 * 109.45900 * 301.74070 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6859 1.9531 0.8956 5 6 3.5470 1.4424 -0.0155 6 1 4.0785 1.9011 -0.8361 7 6 4.2470 0.8569 1.0179 8 7 5.5621 0.8564 1.0041 9 14 3.3276 0.0631 2.4370 10 1 3.0774 -1.3673 2.1263 11 1 4.1427 0.1655 3.6741 12 1 2.0319 0.7598 2.6389 13 7 1.5381 2.1393 -1.1918 14 6 2.1916 3.4451 -1.3524 15 6 1.7083 1.3139 -2.3950 16 1 1.2967 0.3205 -2.2167 17 6 0.9765 1.9671 -3.5707 18 6 1.2088 1.1326 -4.8334 19 6 2.7123 1.0216 -5.0961 20 7 3.3667 0.3901 -3.9432 21 6 4.7885 0.1412 -4.2159 22 6 3.1974 1.1976 -2.7284 23 1 -0.3633 -1.0244 0.0812 24 1 -0.3633 0.5826 0.8467 25 1 -0.3633 0.4420 -0.9278 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 6.0546 0.4442 1.7310 29 1 1.6882 4.0091 -2.1377 30 1 2.1346 3.9978 -0.4147 31 1 3.2368 3.2974 -1.6241 32 1 1.3612 2.9752 -3.7245 33 1 -0.0911 2.0125 -3.3554 34 1 0.7893 0.1364 -4.6934 35 1 0.7256 1.6156 -5.6827 36 1 2.8817 0.4161 -5.9865 37 1 3.1287 2.0173 -5.2494 38 1 5.2738 1.0762 -4.4959 39 1 5.2648 -0.2620 -3.3222 40 1 4.8819 -0.5753 -5.0321 41 1 3.7191 0.7199 -1.8991 42 1 3.6112 2.1925 -2.8931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251355671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = 23.931113 kcal Electronic energy + Delta-G solvation = -19453.230955 eV Core-core repulsion = 16854.880522 eV Total energy + Delta-G solvation = -2598.350433 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42585 -36.56385 -33.27467 -32.08076 -31.84120 -28.96002 -27.27237 -26.15358 -25.07094 -22.40535 -22.36503 -21.62993 -19.61288 -18.31481 -17.05396 -15.53951 -15.18971 -14.60628 -14.41786 -14.19632 -13.95166 -13.41984 -13.06928 -12.70305 -12.44304 -12.22912 -11.95642 -11.88857 -11.81436 -11.46461 -11.21491 -11.10804 -10.95593 -10.73429 -10.64063 -10.50753 -10.10224 -9.92058 -9.77272 -9.56221 -9.39199 -8.79864 -8.55402 -7.80996 -7.11379 -6.13586 -4.12651 3.26459 3.37479 3.39493 4.36456 4.45826 4.94565 5.17031 5.31441 5.36939 5.45821 5.66053 5.77059 5.87755 5.96683 5.97611 6.02809 6.07371 6.09777 6.18189 6.22964 6.26326 6.32869 6.33429 6.40986 6.54604 6.61235 6.68436 6.72584 6.77485 6.85793 6.96695 7.10863 7.22576 7.31842 7.54334 7.62724 7.69628 8.13777 8.21426 8.43029 8.85922 9.49613 10.97290 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.010091 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.983355 B = 2774.008823 C = 3264.044294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.178 3.822 4 H 0.040 0.960 5 C -0.550 4.550 6 H 0.091 0.909 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.524 5.524 14 C 0.031 3.969 15 C 0.090 3.910 16 H 0.090 0.910 17 C -0.114 4.114 18 C -0.113 4.113 19 C 0.054 3.946 20 N -0.541 5.541 21 C 0.030 3.970 22 C 0.006 3.994 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.264 0.736 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.017 0.983 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.134 0.866 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 0.153 -8.591 10.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.070 3.930 4 H 0.058 0.942 5 C -0.589 4.589 6 H 0.109 0.891 7 C -0.127 4.127 8 N -0.533 5.533 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.246 5.246 14 C -0.117 4.117 15 C -0.019 4.019 16 H 0.108 0.892 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.074 4.074 20 N -0.266 5.266 21 C -0.119 4.119 22 C -0.121 4.121 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.151 0.849 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.432 -0.250 -8.324 11.162 hybrid contribution 1.089 0.199 0.574 1.247 sum -6.343 -0.051 -7.751 10.016 Atomic orbital electron populations 1.21751 0.97291 0.99239 1.01803 1.22069 0.94182 0.99468 1.00988 1.19779 0.93846 0.89979 0.89392 0.94248 1.21909 0.90296 1.38103 1.08544 0.89116 1.24979 0.94632 0.95414 0.97708 1.69905 1.06022 1.44512 1.32890 0.86882 0.79922 0.80008 0.81719 1.20529 1.22684 1.18894 1.62663 1.55834 1.03282 1.02807 1.22230 0.97726 0.91511 1.00262 1.21669 0.93151 0.97734 0.89350 0.89190 1.21673 1.00561 0.98594 0.94410 1.21538 0.95300 1.00764 0.97544 1.22070 0.95003 0.96621 0.93732 1.62010 1.12768 1.48189 1.03663 1.22281 0.88581 0.99216 1.01795 1.23766 0.99556 0.95797 0.93008 0.94813 0.93725 0.92140 0.91537 0.93630 0.92652 0.93882 0.92476 0.94260 0.92759 0.91875 0.91388 0.92258 0.91829 0.95830 0.96458 0.90926 0.92392 0.84876 0.95744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.45 37.16 0.35 -2.25 16 2 C -0.13 -2.76 4.38 -26.73 -0.12 -2.88 16 3 C 0.18 4.03 1.61 -68.87 -0.11 3.92 16 4 H 0.04 0.96 7.14 -51.93 -0.37 0.59 16 5 C -0.55 -14.24 6.10 -34.44 -0.21 -14.45 16 6 H 0.09 2.50 4.35 -52.49 -0.23 2.27 16 7 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.19 13.96 55.43 0.77 -25.42 16 9 Si 0.88 21.51 24.40 -169.99 -4.15 17.36 16 10 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 11 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.26 -6.22 6.52 56.52 0.37 -5.85 16 13 N -0.52 -10.48 4.29 -228.20 -0.98 -11.45 16 14 C 0.03 0.61 8.23 60.07 0.49 1.10 16 15 C 0.09 1.67 1.45 -67.63 -0.10 1.58 16 16 H 0.09 1.76 4.90 -51.93 -0.25 1.50 16 17 C -0.11 -1.79 5.24 -26.61 -0.14 -1.93 16 18 C -0.11 -1.57 6.09 -26.65 -0.16 -1.73 16 19 C 0.05 0.81 5.46 -3.83 -0.02 0.79 16 20 N -0.54 -9.56 4.91 -242.95 -1.19 -10.75 16 21 C 0.03 0.49 9.62 60.07 0.58 1.07 16 22 C 0.01 0.13 3.06 -3.83 -0.01 0.12 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.80 8.14 -51.92 -0.42 0.37 16 25 H 0.06 1.05 6.81 -51.93 -0.35 0.70 16 26 H 0.07 1.44 6.14 -51.93 -0.32 1.12 16 27 H 0.05 1.03 3.39 -51.93 -0.18 0.86 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.04 0.73 6.67 -51.93 -0.35 0.38 16 30 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 31 H 0.04 0.83 4.48 -51.93 -0.23 0.60 16 32 H 0.05 0.86 6.55 -51.93 -0.34 0.52 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 1.31 8.02 -51.93 -0.42 0.89 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.13 3.19 4.73 -51.93 -0.25 2.95 16 42 H 0.02 0.51 6.09 -51.93 -0.32 0.20 16 LS Contribution 293.11 15.07 4.42 4.42 Total: -1.00 -27.27 293.11 -7.68 -34.95 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.00 Total: 3.58 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 0.46 Total: -12.69 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -1.40 Total: -47.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.15 Total: 17.36 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.27 -7.68 -34.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251355671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.881 kcal (2) G-P(sol) polarization free energy of solvation -27.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds