Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47032 * 2 1 4 4 H 1.09000 * 109.47097 * 303.46886 * 3 2 1 5 5 C 1.50697 * 109.46972 * 183.47215 * 3 2 1 6 6 H 1.08005 * 120.00295 * 301.48779 * 5 3 2 7 7 C 1.37881 * 120.00243 * 121.48904 * 5 3 2 8 8 N 1.31507 * 120.00228 * 173.07594 * 7 5 3 9 9 Si 1.86801 * 119.99856 * 353.07299 * 7 5 3 10 10 H 1.48503 * 109.46886 * 84.89535 * 9 7 5 11 11 H 1.48494 * 109.47387 * 204.90086 * 9 7 5 12 12 H 1.48507 * 109.47254 * 324.90199 * 9 7 5 13 13 N 1.46895 * 109.47433 * 63.47059 * 3 2 1 14 14 C 1.46854 * 110.99894 * 66.04425 * 13 3 2 15 15 C 1.53032 * 109.52264 * 185.83795 * 14 13 3 16 16 C 1.53113 * 109.28323 * 300.82418 * 15 14 13 17 17 C 1.53116 * 109.16218 * 57.65010 * 16 15 14 18 18 H 1.09007 * 109.50052 * 62.29457 * 17 16 15 19 19 C 1.52996 * 109.50637 * 182.36389 * 17 16 15 20 20 H 1.09003 * 109.46755 * 60.00107 * 19 17 16 21 21 C 1.53001 * 109.47568 * 300.00792 * 19 17 16 22 22 N 1.46901 * 109.47514 * 180.02562 * 19 17 16 23 23 C 1.46842 * 111.00567 * 190.25374 * 13 3 2 24 24 H 1.09007 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47825 * 300.00267 * 1 2 3 26 26 H 1.09002 * 109.47103 * 60.00711 * 1 2 3 27 27 H 1.08998 * 109.47099 * 239.99667 * 2 1 3 28 28 H 1.09005 * 109.46728 * 119.99644 * 2 1 3 29 29 H 0.97002 * 120.00039 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.46329 * 305.86167 * 14 13 3 31 31 H 1.09006 * 109.45958 * 65.83583 * 14 13 3 32 32 H 1.09003 * 109.50151 * 60.76446 * 15 14 13 33 33 H 1.08998 * 109.50531 * 180.87970 * 15 14 13 34 34 H 1.08997 * 109.52667 * 177.55878 * 16 15 14 35 35 H 1.09005 * 109.52383 * 297.68333 * 16 15 14 36 36 H 1.08998 * 109.46941 * 59.99651 * 21 19 17 37 37 H 1.08998 * 109.47131 * 179.97438 * 21 19 17 38 38 H 1.09003 * 109.46524 * 299.99457 * 21 19 17 39 39 H 1.00897 * 110.99780 * 60.00050 * 22 19 17 40 40 H 1.00900 * 111.00179 * 183.95897 * 22 19 17 41 41 H 1.09001 * 109.46612 * 294.18430 * 23 13 3 42 42 H 1.09002 * 109.46111 * 54.14488 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6267 1.9739 -0.8573 5 6 3.5445 1.4433 -0.0860 6 1 4.1289 0.9391 0.6694 7 6 4.1750 2.0878 -1.1292 8 7 5.4847 2.2064 -1.1334 9 14 3.1689 2.7925 -2.5365 10 1 2.6903 4.1501 -2.1715 11 1 4.0131 2.8763 -3.7552 12 1 2.0032 1.9114 -2.8014 13 7 1.6200 2.1104 1.2391 14 6 2.2733 1.5088 2.4087 15 6 1.7052 2.1290 3.6871 16 6 1.9461 3.6409 3.6660 17 6 1.2970 4.2358 2.4133 18 1 0.2199 4.0719 2.4487 19 6 1.5832 5.7376 2.3537 20 1 2.6603 5.9009 2.3169 21 6 1.0067 6.4165 3.5977 22 7 0.9597 6.3077 1.1519 23 6 1.8769 3.5546 1.1717 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.9283 2.6602 -1.8671 30 1 2.0908 0.4343 2.4140 31 1 3.3464 1.6947 2.3608 32 1 0.6346 1.9318 3.7426 33 1 2.2014 1.6936 4.5545 34 1 1.5047 4.0926 4.5544 35 1 3.0179 3.8389 3.6510 36 1 1.4691 5.9936 4.4896 37 1 1.2111 7.4863 3.5554 38 1 -0.0704 6.2531 3.6345 39 1 -0.0396 6.1690 1.1627 40 1 1.1881 7.2857 1.0554 41 1 2.9518 3.7307 1.1295 42 1 1.4065 3.9659 0.2786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251364104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -19.885659 kcal Electronic energy + Delta-G solvation = -18949.341574 eV Core-core repulsion = 16349.091104 eV Total energy + Delta-G solvation = -2600.250470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.85577 -36.29844 -33.83884 -32.00930 -30.82228 -29.70408 -28.24517 -26.85358 -23.68980 -23.10619 -21.93886 -20.73595 -19.33328 -18.51794 -16.77554 -15.95695 -15.16899 -14.44047 -14.26446 -14.16334 -13.59568 -13.30896 -13.13788 -12.85300 -12.77031 -12.41001 -12.31658 -11.93402 -11.75115 -11.46474 -11.29468 -10.96622 -10.81702 -10.69280 -10.36404 -10.20807 -9.98811 -9.88339 -9.62344 -9.46531 -9.44627 -9.00121 -8.52235 -8.40708 -6.92543 -6.07024 -4.07585 3.35248 3.41502 3.44149 4.45079 4.70140 4.83495 5.18104 5.25836 5.39731 5.44158 5.54494 5.57260 5.61018 5.91809 5.99594 6.00786 6.12661 6.15229 6.20451 6.26434 6.32822 6.33794 6.40147 6.50704 6.61004 6.69128 6.80416 6.85976 6.90942 7.04874 7.10910 7.19438 7.28433 7.35586 7.39473 7.64151 7.73629 8.28875 8.43175 8.59021 8.98098 9.58807 11.05883 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.009981 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.452638 B = 2804.588438 C = 3407.360439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.173 3.827 4 H 0.044 0.956 5 C -0.537 4.537 6 H 0.073 0.927 7 C 0.078 3.922 8 N -0.897 5.897 9 Si 0.871 3.129 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.267 1.267 13 N -0.534 5.534 14 C 0.060 3.940 15 C -0.114 4.114 16 C -0.112 4.112 17 C -0.073 4.073 18 H 0.066 0.934 19 C 0.090 3.910 20 H 0.078 0.922 21 C -0.185 4.185 22 N -0.840 5.840 23 C 0.078 3.922 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.262 0.738 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.336 0.664 40 H 0.335 0.665 41 H 0.040 0.960 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 5.217 7.813 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C 0.066 3.934 4 H 0.061 0.939 5 C -0.576 4.576 6 H 0.091 0.909 7 C -0.125 4.125 8 N -0.535 5.535 9 Si 0.699 3.301 10 H -0.194 1.194 11 H -0.219 1.219 12 H -0.192 1.192 13 N -0.258 5.258 14 C -0.069 4.069 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.092 4.092 18 H 0.084 0.916 19 C -0.022 4.022 20 H 0.096 0.904 21 C -0.244 4.244 22 N -0.368 5.368 23 C -0.050 4.050 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.058 0.942 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.584 4.683 7.335 12.945 hybrid contribution 0.075 1.196 -0.243 1.223 sum -9.509 5.878 7.092 13.239 Atomic orbital electron populations 1.21742 0.97781 0.99003 1.01474 1.21606 0.93507 0.98739 1.00524 1.19722 0.94112 0.90954 0.88572 0.93855 1.21542 0.90611 1.34592 1.10854 0.90914 1.25082 0.94667 0.94934 0.97778 1.69929 1.08360 1.42936 1.32284 0.86947 0.80380 0.80503 0.82300 1.19405 1.21856 1.19176 1.62537 1.57166 1.02430 1.03678 1.21855 0.97484 0.97926 0.89591 1.21589 1.00822 0.95026 0.97777 1.21618 1.00485 0.96092 0.96822 1.21168 1.00096 0.92030 0.95901 0.91592 1.21490 0.99067 0.94642 0.86960 0.90368 1.22677 1.01184 1.00107 1.00469 1.58800 1.15651 1.21222 1.41087 1.21700 0.99153 0.88227 0.95949 0.95050 0.92177 0.94183 0.92996 0.93123 0.92777 0.92063 0.93858 0.92293 0.92863 0.92954 0.92346 0.91847 0.93373 0.92960 0.85108 0.85312 0.94191 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.79 37.16 0.36 -2.21 16 2 C -0.11 -2.23 5.29 -26.73 -0.14 -2.37 16 3 C 0.17 4.07 1.70 -68.87 -0.12 3.96 16 4 H 0.04 1.08 4.57 -51.93 -0.24 0.84 16 5 C -0.54 -14.78 7.09 -34.44 -0.24 -15.02 16 6 H 0.07 2.19 7.09 -52.48 -0.37 1.82 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 9 Si 0.87 21.97 26.98 -169.99 -4.59 17.39 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.53 6.75 56.52 0.38 -6.15 16 13 N -0.53 -11.20 3.99 -228.09 -0.91 -12.11 16 14 C 0.06 1.18 4.70 -3.83 -0.02 1.16 16 15 C -0.11 -1.82 6.09 -26.66 -0.16 -1.98 16 16 C -0.11 -1.70 4.86 -26.61 -0.13 -1.83 16 17 C -0.07 -1.17 2.09 -90.55 -0.19 -1.35 16 18 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 19 C 0.09 1.26 2.94 -67.71 -0.20 1.07 16 20 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 21 C -0.19 -2.06 9.13 37.16 0.34 -1.72 16 22 N -0.84 -11.37 8.50 -4.67 -0.04 -11.41 16 23 C 0.08 1.61 4.31 -3.84 -0.02 1.60 16 24 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.05 6.29 -51.93 -0.33 0.72 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.06 1.20 6.16 -51.93 -0.32 0.88 16 31 H 0.04 0.99 6.71 -51.93 -0.35 0.64 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.68 6.57 -51.93 -0.34 0.34 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.69 6.49 -51.93 -0.34 0.36 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.34 4.09 9.00 -39.29 -0.35 3.73 16 40 H 0.33 3.84 9.07 -39.29 -0.36 3.49 16 41 H 0.04 0.97 7.61 -51.93 -0.39 0.57 16 42 H 0.07 1.48 7.51 -51.93 -0.39 1.09 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -29.35 312.34 -8.23 -37.58 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.56 Total: 6.98 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.61 Total: -16.55 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.18 Total: -50.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.59 Total: 17.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.35 -8.23 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251364104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.691 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds