Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47032 * 2 1 4 4 H 1.09000 * 109.47097 * 303.46886 * 3 2 1 5 5 C 1.50697 * 109.46972 * 183.47215 * 3 2 1 6 6 H 1.08005 * 120.00295 * 301.48779 * 5 3 2 7 7 C 1.37881 * 120.00243 * 121.48904 * 5 3 2 8 8 N 1.31507 * 120.00228 * 173.07594 * 7 5 3 9 9 Si 1.86801 * 119.99856 * 353.07299 * 7 5 3 10 10 H 1.48503 * 109.46886 * 84.89535 * 9 7 5 11 11 H 1.48494 * 109.47387 * 204.90086 * 9 7 5 12 12 H 1.48507 * 109.47254 * 324.90199 * 9 7 5 13 13 N 1.46895 * 109.47433 * 63.47059 * 3 2 1 14 14 C 1.46854 * 110.99894 * 66.04425 * 13 3 2 15 15 C 1.53032 * 109.52264 * 185.83795 * 14 13 3 16 16 C 1.53113 * 109.28323 * 300.82418 * 15 14 13 17 17 C 1.53116 * 109.16218 * 57.65010 * 16 15 14 18 18 H 1.09007 * 109.50052 * 62.29457 * 17 16 15 19 19 C 1.52996 * 109.50637 * 182.36389 * 17 16 15 20 20 H 1.09003 * 109.46755 * 60.00107 * 19 17 16 21 21 C 1.53001 * 109.47568 * 300.00792 * 19 17 16 22 22 N 1.46901 * 109.47514 * 180.02562 * 19 17 16 23 23 C 1.46842 * 111.00567 * 190.25374 * 13 3 2 24 24 H 1.09007 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47825 * 300.00267 * 1 2 3 26 26 H 1.09002 * 109.47103 * 60.00711 * 1 2 3 27 27 H 1.08998 * 109.47099 * 239.99667 * 2 1 3 28 28 H 1.09005 * 109.46728 * 119.99644 * 2 1 3 29 29 H 0.97002 * 120.00039 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.46329 * 305.86167 * 14 13 3 31 31 H 1.09006 * 109.45958 * 65.83583 * 14 13 3 32 32 H 1.09003 * 109.50151 * 60.76446 * 15 14 13 33 33 H 1.08998 * 109.50531 * 180.87970 * 15 14 13 34 34 H 1.08997 * 109.52667 * 177.55878 * 16 15 14 35 35 H 1.09005 * 109.52383 * 297.68333 * 16 15 14 36 36 H 1.08998 * 109.46941 * 59.99651 * 21 19 17 37 37 H 1.08998 * 109.47131 * 179.97438 * 21 19 17 38 38 H 1.09003 * 109.46524 * 299.99457 * 21 19 17 39 39 H 1.00897 * 110.99780 * 60.00050 * 22 19 17 40 40 H 1.00900 * 111.00179 * 183.95897 * 22 19 17 41 41 H 1.09001 * 109.46612 * 294.18430 * 23 13 3 42 42 H 1.09002 * 109.46111 * 54.14488 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6267 1.9739 -0.8573 5 6 3.5445 1.4433 -0.0860 6 1 4.1289 0.9391 0.6694 7 6 4.1750 2.0878 -1.1292 8 7 5.4847 2.2064 -1.1334 9 14 3.1689 2.7925 -2.5365 10 1 2.6903 4.1501 -2.1715 11 1 4.0131 2.8763 -3.7552 12 1 2.0032 1.9114 -2.8014 13 7 1.6200 2.1104 1.2391 14 6 2.2733 1.5088 2.4087 15 6 1.7052 2.1290 3.6871 16 6 1.9461 3.6409 3.6660 17 6 1.2970 4.2358 2.4133 18 1 0.2199 4.0719 2.4487 19 6 1.5832 5.7376 2.3537 20 1 2.6603 5.9009 2.3169 21 6 1.0067 6.4165 3.5977 22 7 0.9597 6.3077 1.1519 23 6 1.8769 3.5546 1.1717 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.9283 2.6602 -1.8671 30 1 2.0908 0.4343 2.4140 31 1 3.3464 1.6947 2.3608 32 1 0.6346 1.9318 3.7426 33 1 2.2014 1.6936 4.5545 34 1 1.5047 4.0926 4.5544 35 1 3.0179 3.8389 3.6510 36 1 1.4691 5.9936 4.4896 37 1 1.2111 7.4863 3.5554 38 1 -0.0704 6.2531 3.6345 39 1 -0.0396 6.1690 1.1627 40 1 1.1881 7.2857 1.0554 41 1 2.9518 3.7307 1.1295 42 1 1.4065 3.9659 0.2786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251364104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -40.767675 kcal Electronic energy + Delta-G solvation = -18950.247087 eV Core-core repulsion = 16349.091104 eV Total energy + Delta-G solvation = -2601.155983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37568 -37.74684 -35.34429 -34.11383 -32.36158 -31.08704 -29.45296 -28.64603 -25.35557 -24.67243 -23.51051 -22.11046 -20.69921 -20.32985 -18.88926 -17.34075 -16.71619 -16.17286 -15.69130 -15.57267 -15.14326 -14.81247 -14.75386 -14.47740 -13.96609 -13.94450 -13.66587 -13.64060 -13.29471 -13.10522 -12.85798 -12.45143 -12.33393 -12.24495 -11.94027 -11.77174 -11.66348 -11.48558 -11.34070 -11.22473 -10.99578 -10.82819 -10.65139 -9.46434 -8.79861 -8.32530 -6.35293 1.29877 1.32689 1.39996 2.30624 2.99980 3.44502 3.63854 3.97771 4.09495 4.16658 4.27719 4.34881 4.41228 4.50861 4.57773 4.68265 4.74413 4.79301 4.81124 4.93133 4.95136 5.04485 5.10532 5.14954 5.16145 5.19286 5.28795 5.31224 5.37624 5.42417 5.46890 5.51106 5.61123 5.71964 5.72395 6.20543 6.37385 6.54014 6.66312 6.73272 6.73773 7.33932 8.84237 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.009981 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.452638 B = 2804.588438 C = 3407.360439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C 0.172 3.828 4 H 0.035 0.965 5 C -0.529 4.529 6 H 0.031 0.969 7 C 0.022 3.978 8 N -0.946 5.946 9 Si 0.931 3.069 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.520 5.520 14 C 0.062 3.938 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.064 4.064 18 H 0.080 0.920 19 C 0.093 3.907 20 H 0.054 0.946 21 C -0.174 4.174 22 N -0.856 5.856 23 C 0.086 3.914 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.263 0.737 30 H 0.062 0.938 31 H -0.001 1.001 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.346 0.654 40 H 0.346 0.654 41 H -0.009 1.009 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.861 5.854 8.896 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.143 4.143 3 C 0.065 3.935 4 H 0.053 0.947 5 C -0.568 4.568 6 H 0.049 0.951 7 C -0.176 4.176 8 N -0.586 5.586 9 Si 0.756 3.244 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.244 5.244 14 C -0.067 4.067 15 C -0.144 4.144 16 C -0.148 4.148 17 C -0.083 4.083 18 H 0.098 0.902 19 C -0.019 4.019 20 H 0.072 0.928 21 C -0.233 4.233 22 N -0.387 5.387 23 C -0.043 4.043 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.017 0.983 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.009 0.991 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.789 5.317 8.433 16.215 hybrid contribution 1.135 0.952 -0.527 1.572 sum -11.654 6.269 7.906 15.415 Atomic orbital electron populations 1.21621 0.94604 1.00902 1.01719 1.21530 0.96253 0.96485 1.00057 1.19713 0.91198 0.92935 0.89662 0.94701 1.21764 0.92835 1.32979 1.09223 0.95066 1.25865 0.95540 0.95745 1.00499 1.70070 1.10206 1.44922 1.33412 0.85982 0.79358 0.79954 0.79129 1.19204 1.21532 1.17354 1.62575 1.56196 1.02601 1.02984 1.21891 0.95059 0.98463 0.91247 1.21558 1.01771 0.95266 0.95817 1.21625 0.99548 0.95775 0.97817 1.21112 1.00360 0.93085 0.93758 0.90187 1.21357 0.98048 0.93561 0.88935 0.92791 1.22539 1.01690 1.00509 0.98537 1.58733 1.16458 1.22269 1.41217 1.21655 0.96179 0.88304 0.98157 0.92363 0.91742 0.94060 0.94015 0.93213 0.92811 0.91954 0.98252 0.90414 0.90861 0.89269 0.94297 0.91358 0.92120 0.91648 0.83990 0.84013 0.99088 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.79 71.98 0.70 -3.66 16 2 C -0.10 -4.36 5.29 30.59 0.16 -4.20 16 3 C 0.17 8.20 1.70 44.17 0.08 8.28 16 4 H 0.04 1.73 4.57 -2.39 -0.01 1.72 16 5 C -0.53 -30.48 7.09 25.60 0.18 -30.30 16 6 H 0.03 2.01 7.09 -2.91 -0.02 1.99 16 7 C 0.02 1.30 5.47 84.66 0.46 1.76 16 8 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 9 Si 0.93 46.35 26.98 68.60 1.85 48.21 16 10 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.25 -11.64 6.75 99.48 0.67 -10.97 16 13 N -0.52 -21.78 3.99 -875.55 -3.49 -25.28 16 14 C 0.06 2.46 4.70 86.32 0.41 2.86 16 15 C -0.11 -3.14 6.09 30.64 0.19 -2.96 16 16 C -0.11 -3.10 4.86 30.67 0.15 -2.95 16 17 C -0.06 -1.95 2.09 -10.75 -0.02 -1.97 16 18 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 19 C 0.09 2.47 2.94 44.91 0.13 2.60 16 20 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 21 C -0.17 -3.27 9.13 71.98 0.66 -2.62 16 22 N -0.86 -21.86 8.50 -168.68 -1.43 -23.29 16 23 C 0.09 3.57 4.31 86.32 0.37 3.94 16 24 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.06 2.09 7.71 -2.39 -0.02 2.07 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 2.05 6.29 -2.38 -0.01 2.03 16 29 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.06 2.43 6.16 -2.39 -0.01 2.42 16 31 H 0.00 -0.04 6.71 -2.38 -0.02 -0.06 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.93 6.57 -2.39 -0.02 1.92 16 35 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.23 6.49 -2.39 -0.02 1.22 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.35 7.57 9.00 -89.70 -0.81 6.76 16 40 H 0.35 7.40 9.07 -89.69 -0.81 6.58 16 41 H -0.01 -0.48 7.61 -2.39 -0.02 -0.50 16 42 H 0.05 2.34 7.51 -2.39 -0.02 2.32 16 Total: -1.00 -67.12 312.34 0.03 -67.09 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.66 Total: 22.63 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.47 Total: -29.20 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -4.63 Total: -108.73 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.85 Total: 48.21 kcal Total: -67.12 0.03 -67.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251364104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.325 kcal (2) G-P(sol) polarization free energy of solvation -67.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds