Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47134 * 2 1 4 4 H 1.09004 * 109.46578 * 183.52602 * 3 2 1 5 5 C 1.50691 * 109.47058 * 63.52461 * 3 2 1 6 6 H 1.08009 * 119.99951 * 245.24398 * 5 3 2 7 7 C 1.37880 * 120.00413 * 65.24738 * 5 3 2 8 8 N 1.31516 * 119.99704 * 8.80291 * 7 5 3 9 9 Si 1.86799 * 120.00131 * 188.52100 * 7 5 3 10 10 H 1.48498 * 109.46872 * 180.27516 * 9 7 5 11 11 H 1.48495 * 109.47261 * 300.27927 * 9 7 5 12 12 H 1.48501 * 109.46819 * 60.28078 * 9 7 5 13 13 N 1.46896 * 109.46780 * 303.52028 * 3 2 1 14 14 C 1.46842 * 111.00701 * 301.27231 * 13 3 2 15 15 C 1.53039 * 109.53004 * 174.16137 * 14 13 3 16 16 C 1.53117 * 109.27424 * 59.17690 * 15 14 13 17 17 C 1.53122 * 109.16706 * 302.34865 * 16 15 14 18 18 H 1.08995 * 109.50029 * 297.71659 * 17 16 15 19 19 C 1.52994 * 109.50687 * 177.59342 * 17 16 15 20 20 H 1.08998 * 109.47274 * 185.19648 * 19 17 16 21 21 C 1.53002 * 109.47013 * 65.19970 * 19 17 16 22 22 N 1.46900 * 109.47286 * 305.20149 * 19 17 16 23 23 C 1.46855 * 110.99775 * 177.06407 * 13 3 2 24 24 H 1.09001 * 109.47065 * 304.06941 * 1 2 3 25 25 H 1.08996 * 109.47163 * 64.06726 * 1 2 3 26 26 H 1.08992 * 109.47531 * 184.07024 * 1 2 3 27 27 H 1.09001 * 109.47294 * 240.00240 * 2 1 3 28 28 H 1.08997 * 109.47387 * 120.00114 * 2 1 3 29 29 H 0.97006 * 119.99948 * 357.15578 * 8 7 5 30 30 H 1.09003 * 109.46360 * 294.17797 * 14 13 3 31 31 H 1.09001 * 109.46475 * 54.14214 * 14 13 3 32 32 H 1.08997 * 109.50195 * 299.24194 * 15 14 13 33 33 H 1.08997 * 109.53666 * 179.13758 * 15 14 13 34 34 H 1.09000 * 109.52483 * 182.44422 * 16 15 14 35 35 H 1.09002 * 109.52620 * 62.25380 * 16 15 14 36 36 H 1.08993 * 109.47534 * 179.97438 * 21 19 17 37 37 H 1.09006 * 109.47014 * 299.99690 * 21 19 17 38 38 H 1.08998 * 109.47033 * 59.99669 * 21 19 17 39 39 H 1.00896 * 111.00390 * 56.04647 * 22 19 17 40 40 H 1.00903 * 110.99562 * 180.02562 * 22 19 17 41 41 H 1.09000 * 109.45906 * 305.85521 * 23 13 3 42 42 H 1.08991 * 109.46480 * 65.82442 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1282 1.4431 -0.0632 5 6 1.6103 2.1273 1.2717 6 1 0.9174 2.9549 1.2319 7 6 2.1016 1.6974 2.4862 8 7 3.0716 0.8102 2.5262 9 14 1.3948 2.3808 4.0745 10 1 2.0940 1.7670 5.2319 11 1 1.5828 3.8535 4.1067 12 1 -0.0544 2.0651 4.1475 13 7 1.4821 2.1591 -1.1546 14 6 1.8560 1.5014 -2.4132 15 6 1.1412 2.1861 -3.5803 16 6 1.5372 3.6647 -3.6182 17 6 1.1812 4.3149 -2.2784 18 1 0.1034 4.2638 -2.1241 19 6 1.6283 5.7781 -2.2858 20 1 1.4589 6.2148 -1.3016 21 6 0.8238 6.5518 -3.3323 22 7 3.0581 5.8516 -2.6147 23 6 1.8950 3.5684 -1.1491 24 1 -0.3633 0.5757 0.8513 25 1 -0.3633 0.4494 -0.9241 26 1 -0.3634 -1.0250 0.0729 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.4133 0.4277 1.7029 30 1 2.9343 1.5742 -2.5547 31 1 1.5651 0.4516 -2.3747 32 1 0.0628 2.1016 -3.4465 33 1 1.4305 1.7078 -4.5160 34 1 0.9971 4.1660 -4.4213 35 1 2.6101 3.7501 -3.7908 36 1 1.1419 7.5943 -3.3374 37 1 0.9932 6.1151 -4.3166 38 1 -0.2371 6.4972 -3.0883 39 1 3.2508 5.3956 -3.4939 40 1 3.3778 6.8085 -2.6256 41 1 1.6322 4.0199 -0.1924 42 1 2.9730 3.6316 -1.2964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251364107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = -17.090928 kcal Electronic energy + Delta-G solvation = -18861.543796 eV Core-core repulsion = 16261.414514 eV Total energy + Delta-G solvation = -2600.129282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07298 -36.47365 -34.09147 -31.61567 -30.73332 -29.64598 -28.33851 -26.04805 -23.91150 -23.58266 -22.07848 -20.84491 -18.96270 -18.78756 -16.62592 -16.05374 -15.37724 -14.60549 -14.21879 -13.96260 -13.66655 -13.33314 -13.22851 -12.91109 -12.73432 -12.61290 -12.37269 -12.03150 -11.55889 -11.26011 -10.97903 -10.92445 -10.73516 -10.50005 -10.42333 -10.31113 -10.04388 -9.98168 -9.72276 -9.70012 -9.35405 -8.52243 -8.35776 -8.23180 -7.07253 -6.25192 -3.93856 3.48517 3.50699 3.68750 4.57746 4.69987 4.79933 5.04500 5.11075 5.35223 5.37110 5.45337 5.47121 5.49080 5.85764 5.91783 5.92889 5.99095 6.07486 6.18908 6.26765 6.27581 6.37007 6.38412 6.43648 6.54504 6.59343 6.64043 6.90788 6.96904 6.99860 7.20775 7.28196 7.31301 7.49024 7.55836 7.56488 8.03331 8.18957 8.52415 8.71275 8.98303 9.75294 11.11225 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.008101 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.280037 B = 3455.666731 C = 4178.432047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C 0.207 3.793 4 H -0.013 1.013 5 C -0.575 4.575 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.525 5.525 14 C 0.051 3.949 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.077 4.077 18 H 0.074 0.926 19 C 0.091 3.909 20 H 0.081 0.919 21 C -0.185 4.185 22 N -0.840 5.840 23 C 0.080 3.920 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.021 0.979 28 H 0.062 0.938 29 H 0.269 0.731 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.336 0.664 40 H 0.334 0.666 41 H 0.081 0.919 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 6.986 -11.890 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 C 0.100 3.900 4 H 0.004 0.996 5 C -0.614 4.614 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.551 5.551 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.249 5.249 14 C -0.078 4.078 15 C -0.150 4.150 16 C -0.152 4.152 17 C -0.096 4.096 18 H 0.092 0.908 19 C -0.021 4.021 20 H 0.099 0.901 21 C -0.245 4.245 22 N -0.370 5.370 23 C -0.048 4.048 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.742 6.479 -9.506 12.097 hybrid contribution 0.427 0.609 -2.658 2.760 sum -3.315 7.087 -12.164 14.463 Atomic orbital electron populations 1.21432 0.96365 0.97833 1.02083 1.21633 0.96343 0.98474 0.98808 1.19319 0.91643 0.90472 0.88576 0.99584 1.21806 1.29959 1.18487 0.91143 0.92649 1.25680 0.94692 0.96223 1.01884 1.70796 1.23649 1.28868 1.31813 0.83601 0.75732 0.75618 0.75688 1.21014 1.21628 1.21475 1.61917 1.60040 1.01691 1.01295 1.22063 0.96222 0.98586 0.90943 1.21539 1.01010 0.95148 0.97315 1.21641 1.00511 0.96035 0.97022 1.21262 1.00415 0.92421 0.95548 0.90804 1.21449 0.86656 0.95861 0.98100 0.90121 1.22664 1.01676 0.99860 1.00263 1.58904 1.16860 1.21364 1.39854 1.21818 0.96628 0.88702 0.97627 0.91937 0.93535 0.96331 0.96060 0.91904 0.91968 0.96586 0.91320 0.91684 0.92825 0.93014 0.92302 0.93251 0.92749 0.92153 0.84968 0.85408 0.90045 0.95155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.51 37.16 0.35 -2.26 16 2 C -0.11 -2.70 4.88 -26.73 -0.13 -2.83 16 3 C 0.21 5.19 1.39 -68.87 -0.10 5.10 16 4 H -0.01 -0.38 7.52 -51.93 -0.39 -0.77 16 5 C -0.58 -15.77 6.49 -34.44 -0.22 -15.99 16 6 H 0.06 1.54 6.73 -52.48 -0.35 1.19 16 7 C 0.02 0.54 5.18 -17.82 -0.09 0.45 16 8 N -0.91 -27.42 13.03 55.43 0.72 -26.70 16 9 Si 1.06 25.36 29.91 -169.99 -5.08 20.27 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.52 -11.24 3.69 -228.08 -0.84 -12.08 16 14 C 0.05 0.94 5.09 -3.84 -0.02 0.92 16 15 C -0.11 -1.69 6.09 -26.65 -0.16 -1.85 16 16 C -0.11 -1.59 4.59 -26.61 -0.12 -1.71 16 17 C -0.08 -1.20 2.18 -90.54 -0.20 -1.40 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 19 C 0.09 1.21 3.13 -67.71 -0.21 1.00 16 20 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 21 C -0.19 -1.97 9.24 37.16 0.34 -1.63 16 22 N -0.84 -10.64 8.62 -4.67 -0.04 -10.68 16 23 C 0.08 1.62 4.40 -3.83 -0.02 1.61 16 24 H 0.06 1.48 7.20 -51.93 -0.37 1.11 16 25 H 0.05 0.96 7.55 -51.93 -0.39 0.57 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.02 0.46 6.45 -51.93 -0.34 0.12 16 28 H 0.06 1.64 6.33 -51.93 -0.33 1.31 16 29 H 0.27 8.09 6.01 -40.82 -0.25 7.85 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 1.29 6.05 -51.93 -0.31 0.98 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.62 6.70 -51.93 -0.35 0.28 16 35 H 0.06 0.82 6.39 -51.93 -0.33 0.49 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.55 6.63 -51.93 -0.34 0.21 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.34 3.95 6.82 -39.29 -0.27 3.68 16 40 H 0.33 3.53 9.04 -39.29 -0.36 3.18 16 41 H 0.08 1.86 6.20 -51.93 -0.32 1.54 16 42 H 0.03 0.66 7.73 -51.93 -0.40 0.26 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -29.12 307.23 -8.47 -37.59 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.28 Total: 5.58 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -0.57 Total: -18.60 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.16 Total: -49.47 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.12 -8.47 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251364107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.500 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds