Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47134 * 2 1 4 4 H 1.09004 * 109.46578 * 183.52602 * 3 2 1 5 5 C 1.50691 * 109.47058 * 63.52461 * 3 2 1 6 6 H 1.08009 * 119.99951 * 245.24398 * 5 3 2 7 7 C 1.37880 * 120.00413 * 65.24738 * 5 3 2 8 8 N 1.31516 * 119.99704 * 8.80291 * 7 5 3 9 9 Si 1.86799 * 120.00131 * 188.52100 * 7 5 3 10 10 H 1.48498 * 109.46872 * 180.27516 * 9 7 5 11 11 H 1.48495 * 109.47261 * 300.27927 * 9 7 5 12 12 H 1.48501 * 109.46819 * 60.28078 * 9 7 5 13 13 N 1.46896 * 109.46780 * 303.52028 * 3 2 1 14 14 C 1.46842 * 111.00701 * 301.27231 * 13 3 2 15 15 C 1.53039 * 109.53004 * 174.16137 * 14 13 3 16 16 C 1.53117 * 109.27424 * 59.17690 * 15 14 13 17 17 C 1.53122 * 109.16706 * 302.34865 * 16 15 14 18 18 H 1.08995 * 109.50029 * 297.71659 * 17 16 15 19 19 C 1.52994 * 109.50687 * 177.59342 * 17 16 15 20 20 H 1.08998 * 109.47274 * 185.19648 * 19 17 16 21 21 C 1.53002 * 109.47013 * 65.19970 * 19 17 16 22 22 N 1.46900 * 109.47286 * 305.20149 * 19 17 16 23 23 C 1.46855 * 110.99775 * 177.06407 * 13 3 2 24 24 H 1.09001 * 109.47065 * 304.06941 * 1 2 3 25 25 H 1.08996 * 109.47163 * 64.06726 * 1 2 3 26 26 H 1.08992 * 109.47531 * 184.07024 * 1 2 3 27 27 H 1.09001 * 109.47294 * 240.00240 * 2 1 3 28 28 H 1.08997 * 109.47387 * 120.00114 * 2 1 3 29 29 H 0.97006 * 119.99948 * 357.15578 * 8 7 5 30 30 H 1.09003 * 109.46360 * 294.17797 * 14 13 3 31 31 H 1.09001 * 109.46475 * 54.14214 * 14 13 3 32 32 H 1.08997 * 109.50195 * 299.24194 * 15 14 13 33 33 H 1.08997 * 109.53666 * 179.13758 * 15 14 13 34 34 H 1.09000 * 109.52483 * 182.44422 * 16 15 14 35 35 H 1.09002 * 109.52620 * 62.25380 * 16 15 14 36 36 H 1.08993 * 109.47534 * 179.97438 * 21 19 17 37 37 H 1.09006 * 109.47014 * 299.99690 * 21 19 17 38 38 H 1.08998 * 109.47033 * 59.99669 * 21 19 17 39 39 H 1.00896 * 111.00390 * 56.04647 * 22 19 17 40 40 H 1.00903 * 110.99562 * 180.02562 * 22 19 17 41 41 H 1.09000 * 109.45906 * 305.85521 * 23 13 3 42 42 H 1.08991 * 109.46480 * 65.82442 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1282 1.4431 -0.0632 5 6 1.6103 2.1273 1.2717 6 1 0.9174 2.9549 1.2319 7 6 2.1016 1.6974 2.4862 8 7 3.0716 0.8102 2.5262 9 14 1.3948 2.3808 4.0745 10 1 2.0940 1.7670 5.2319 11 1 1.5828 3.8535 4.1067 12 1 -0.0544 2.0651 4.1475 13 7 1.4821 2.1591 -1.1546 14 6 1.8560 1.5014 -2.4132 15 6 1.1412 2.1861 -3.5803 16 6 1.5372 3.6647 -3.6182 17 6 1.1812 4.3149 -2.2784 18 1 0.1034 4.2638 -2.1241 19 6 1.6283 5.7781 -2.2858 20 1 1.4589 6.2148 -1.3016 21 6 0.8238 6.5518 -3.3323 22 7 3.0581 5.8516 -2.6147 23 6 1.8950 3.5684 -1.1491 24 1 -0.3633 0.5757 0.8513 25 1 -0.3633 0.4494 -0.9241 26 1 -0.3634 -1.0250 0.0729 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.4133 0.4277 1.7029 30 1 2.9343 1.5742 -2.5547 31 1 1.5651 0.4516 -2.3747 32 1 0.0628 2.1016 -3.4465 33 1 1.4305 1.7078 -4.5160 34 1 0.9971 4.1660 -4.4213 35 1 2.6101 3.7501 -3.7908 36 1 1.1419 7.5943 -3.3374 37 1 0.9932 6.1151 -4.3166 38 1 -0.2371 6.4972 -3.0883 39 1 3.2508 5.3956 -3.4939 40 1 3.3778 6.8085 -2.6256 41 1 1.6322 4.0199 -0.1924 42 1 2.9730 3.6316 -1.2964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251364107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = -36.556348 kcal Electronic energy + Delta-G solvation = -18862.387880 eV Core-core repulsion = 16261.414514 eV Total energy + Delta-G solvation = -2600.973366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53484 -37.99913 -35.69663 -33.49514 -32.38540 -31.00070 -29.35759 -27.97028 -25.82691 -24.98474 -23.65683 -22.30553 -20.77318 -20.07399 -18.64785 -17.27080 -16.95942 -16.03514 -15.78905 -15.59953 -15.37349 -14.88117 -14.54070 -14.35598 -14.12643 -13.98478 -13.65470 -13.50077 -13.24193 -12.89457 -12.65360 -12.51672 -12.21592 -12.13101 -11.95111 -11.93672 -11.90177 -11.61124 -11.47556 -11.09613 -10.88189 -10.46045 -10.34039 -9.50872 -8.90674 -8.52930 -6.21814 1.52799 1.60707 1.79273 2.58862 3.22244 3.28590 3.74008 3.86527 3.89968 4.10362 4.23979 4.30094 4.39282 4.49480 4.49707 4.56382 4.64417 4.68223 4.74148 4.82658 4.89636 5.01078 5.02789 5.08101 5.10996 5.15710 5.17839 5.27887 5.30960 5.35490 5.45242 5.54175 5.60980 5.70140 6.00879 6.14267 6.35466 6.55853 6.59581 6.68692 6.84873 7.55445 8.83095 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.008101 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.280037 B = 3455.666731 C = 4178.432047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C 0.209 3.791 4 H -0.059 1.059 5 C -0.575 4.575 6 H 0.047 0.953 7 C -0.030 4.030 8 N -0.939 5.939 9 Si 1.108 2.892 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.270 1.270 13 N -0.524 5.524 14 C 0.047 3.953 15 C -0.105 4.105 16 C -0.108 4.108 17 C -0.069 4.069 18 H 0.070 0.930 19 C 0.095 3.905 20 H 0.062 0.938 21 C -0.174 4.174 22 N -0.854 5.854 23 C 0.088 3.912 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.255 0.745 30 H 0.003 0.997 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.343 0.657 40 H 0.346 0.654 41 H 0.045 0.955 42 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.102 7.970 -13.880 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.102 3.898 4 H -0.042 1.042 5 C -0.613 4.613 6 H 0.065 0.935 7 C -0.228 4.228 8 N -0.578 5.578 9 Si 0.931 3.069 10 H -0.212 1.212 11 H -0.201 1.201 12 H -0.195 1.195 13 N -0.249 5.249 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.088 4.088 18 H 0.089 0.911 19 C -0.017 4.017 20 H 0.080 0.920 21 C -0.234 4.234 22 N -0.387 5.387 23 C -0.041 4.041 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.021 0.979 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.064 0.936 42 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -5.349 7.479 -11.532 14.749 hybrid contribution 0.981 0.301 -2.076 2.316 sum -4.368 7.780 -13.608 16.273 Atomic orbital electron populations 1.21301 0.94425 0.99153 1.01591 1.21508 0.97875 0.97071 0.98203 1.19164 0.89040 0.91924 0.89688 1.04194 1.22016 1.29011 1.17962 0.92310 0.93474 1.27023 0.94395 0.96004 1.05384 1.70913 1.25297 1.30527 1.31029 0.83045 0.75983 0.75796 0.72104 1.21248 1.20098 1.19534 1.61937 1.59326 1.02147 1.01446 1.22193 0.96049 0.98899 0.90938 1.21529 1.00587 0.95666 0.96537 1.21617 1.01046 0.95346 0.96552 1.21180 0.99422 0.93557 0.94670 0.91146 1.21313 0.87560 0.94392 0.98455 0.91977 1.22536 1.01122 1.00220 0.99483 1.58834 1.16707 1.22609 1.40533 1.21728 0.95763 0.88455 0.98107 0.94287 0.92283 0.93796 0.94287 0.94843 0.93445 0.97904 0.91447 0.91380 0.89881 0.89703 0.92240 0.91854 0.91529 0.91960 0.84165 0.83988 0.93607 0.97527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.51 71.98 0.68 -3.91 16 2 C -0.11 -5.21 4.88 30.60 0.15 -5.06 16 3 C 0.21 10.95 1.39 44.17 0.06 11.01 16 4 H -0.06 -3.57 7.52 -2.38 -0.02 -3.59 16 5 C -0.57 -32.60 6.49 25.60 0.17 -32.44 16 6 H 0.05 2.71 6.73 -2.91 -0.02 2.69 16 7 C -0.03 -1.76 5.18 84.66 0.44 -1.32 16 8 N -0.94 -58.49 13.03 21.45 0.28 -58.21 16 9 Si 1.11 51.72 29.91 68.60 2.05 53.77 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.52 -22.79 3.69 -875.51 -3.23 -26.02 16 14 C 0.05 1.73 5.09 86.33 0.44 2.17 16 15 C -0.11 -2.85 6.09 30.65 0.19 -2.66 16 16 C -0.11 -2.67 4.59 30.67 0.14 -2.53 16 17 C -0.07 -2.07 2.18 -10.74 -0.02 -2.09 16 18 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 19 C 0.09 2.38 3.13 44.91 0.14 2.52 16 20 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 21 C -0.17 -3.15 9.24 71.98 0.67 -2.48 16 22 N -0.85 -20.54 8.62 -168.69 -1.45 -22.00 16 23 C 0.09 3.64 4.40 86.32 0.38 4.02 16 24 H 0.04 1.83 7.20 -2.39 -0.02 1.81 16 25 H 0.06 2.35 7.55 -2.39 -0.02 2.33 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.71 6.45 -2.39 -0.02 1.69 16 28 H 0.03 1.79 6.33 -2.39 -0.02 1.78 16 29 H 0.26 16.21 6.01 -92.70 -0.56 15.65 16 30 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.07 2.45 6.05 -2.39 -0.01 2.44 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.63 6.70 -2.39 -0.02 1.61 16 35 H 0.06 1.49 6.39 -2.39 -0.02 1.48 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.06 6.63 -2.38 -0.02 1.04 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.34 7.36 6.82 -89.70 -0.61 6.75 16 40 H 0.35 6.78 9.04 -89.69 -0.81 5.97 16 41 H 0.05 2.19 6.20 -2.39 -0.01 2.17 16 42 H 0.01 0.30 7.73 -2.39 -0.02 0.28 16 Total: -1.00 -65.88 307.23 0.87 -65.01 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.21 Total: 20.22 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 3.43 Total: -32.77 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -4.40 Total: -106.23 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Total: -65.88 0.87 -65.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251364107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.457 kcal (2) G-P(sol) polarization free energy of solvation -65.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds