Wall clock time and date at job start Mon Mar 30 2020 03:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47417 * 2 1 4 4 H 1.09001 * 109.46943 * 305.68454 * 3 2 1 5 5 C 1.50700 * 109.47100 * 185.68348 * 3 2 1 6 6 H 1.08002 * 119.99914 * 239.99780 * 5 3 2 7 7 C 1.37870 * 120.00000 * 60.00052 * 5 3 2 8 8 N 1.31510 * 120.00068 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47175 * 89.99706 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00272 * 9 7 5 12 12 H 1.48502 * 109.46786 * 329.99867 * 9 7 5 13 13 N 1.46900 * 109.46924 * 65.68148 * 3 2 1 14 14 C 1.46901 * 110.99855 * 208.44522 * 13 3 2 15 15 H 1.08997 * 109.47383 * 31.89101 * 14 13 3 16 16 C 1.53001 * 109.46885 * 271.89284 * 14 13 3 17 17 C 1.53003 * 109.47423 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47077 * 59.99474 * 17 16 14 19 19 C 1.52997 * 109.47577 * 300.00860 * 18 17 16 20 20 C 1.52994 * 109.47243 * 151.89467 * 14 13 3 21 21 H 1.08997 * 109.47510 * 60.00011 * 20 14 13 22 22 C 1.53001 * 109.47030 * 299.99728 * 20 14 13 23 23 N 1.46903 * 109.47203 * 175.00032 * 22 20 14 24 24 H 1.08998 * 109.47007 * 294.01383 * 1 2 3 25 25 H 1.08994 * 109.47412 * 54.01448 * 1 2 3 26 26 H 1.09002 * 109.47300 * 174.02090 * 1 2 3 27 27 H 1.08999 * 109.47206 * 239.99690 * 2 1 3 28 28 H 1.09005 * 109.46951 * 120.00023 * 2 1 3 29 29 H 0.97007 * 119.99900 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00556 * 332.39688 * 13 3 2 31 31 H 1.09004 * 109.47215 * 60.00208 * 16 14 13 32 32 H 1.08997 * 109.47205 * 299.99583 * 16 14 13 33 33 H 1.09007 * 109.46545 * 300.00516 * 17 16 14 34 34 H 1.08996 * 109.47188 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.46747 * 60.00296 * 18 17 16 36 36 H 1.08993 * 109.47355 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47615 * 180.02562 * 19 18 17 38 38 H 1.09007 * 109.46867 * 300.00005 * 19 18 17 39 39 H 1.08999 * 109.47308 * 294.99668 * 22 20 14 40 40 H 1.09004 * 109.47210 * 55.00430 * 22 20 14 41 41 H 1.00906 * 110.99933 * 179.97438 * 23 22 20 42 42 H 1.00899 * 111.00260 * 303.95722 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 -0.8347 5 6 3.5404 1.4447 -0.1407 6 1 4.1544 1.8862 0.6303 7 6 4.1293 0.8832 -1.2537 8 7 3.3816 0.3452 -2.1924 9 14 5.9892 0.8866 -1.4285 10 1 6.5460 -0.3472 -0.8180 11 1 6.3509 0.9335 -2.8680 12 1 6.5489 2.0765 -0.7384 13 7 1.6655 2.0942 1.2621 14 6 1.5052 3.5429 1.0791 15 1 1.1424 3.7439 0.0711 16 6 2.8544 4.2351 1.2829 17 6 2.6874 5.7441 1.0930 18 6 1.6807 6.2783 2.1138 19 6 0.3315 5.5861 1.9101 20 6 0.4984 4.0776 2.0996 21 1 0.8613 3.8767 3.1076 22 6 -0.8507 3.3854 1.8958 23 7 -1.7827 3.8094 2.9492 24 1 -0.3633 0.4182 0.9387 25 1 -0.3634 0.6038 -0.8315 26 1 -0.3634 -1.0221 -0.1070 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.7960 -0.0502 -2.9753 30 1 0.8280 1.6835 1.6467 31 1 3.5716 3.8542 0.5559 32 1 3.2172 4.0342 2.2909 33 1 2.3242 5.9453 0.0851 34 1 3.6486 6.2371 1.2377 35 1 2.0437 6.0769 3.1217 36 1 1.5613 7.3531 1.9782 37 1 -0.3858 5.9670 2.6371 38 1 -0.0316 5.7874 0.9021 39 1 -1.2556 3.6583 0.9212 40 1 -0.7157 2.3048 1.9436 41 1 -2.6821 3.3659 2.8363 42 1 -1.4011 3.6259 3.8650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251379465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:39 Heat of formation + Delta-G solvation = -28.614404 kcal Electronic energy + Delta-G solvation = -18704.883027 eV Core-core repulsion = 16104.254049 eV Total energy + Delta-G solvation = -2600.628977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.94107 -35.60993 -34.39305 -32.30972 -31.16992 -29.90816 -28.02324 -26.06744 -24.31210 -22.82791 -21.26017 -20.52239 -19.58520 -19.13588 -16.23627 -15.91659 -15.15850 -14.85792 -14.44360 -14.15353 -13.69167 -13.64014 -13.38267 -12.98969 -12.63797 -12.26524 -11.95832 -11.69227 -11.49085 -11.36918 -11.05229 -10.93098 -10.75040 -10.60035 -10.48773 -10.22028 -10.08635 -9.92965 -9.67855 -9.53531 -9.22478 -8.93861 -8.57139 -8.29442 -7.15996 -5.93060 -3.95915 3.34179 3.40729 3.44515 4.47364 4.64914 4.94658 5.12347 5.25890 5.32247 5.35681 5.52081 5.64849 5.86851 5.89576 5.93554 6.05281 6.07906 6.10034 6.15200 6.16578 6.21400 6.39486 6.50456 6.55092 6.59703 6.65527 6.72872 6.82628 7.00951 7.09072 7.15849 7.17084 7.25886 7.46504 7.54715 7.80417 7.97793 8.39205 8.45740 8.82018 9.11906 9.68394 11.12325 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.008264 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.873277 B = 3387.193637 C = 4403.252495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.486 4.486 6 H 0.064 0.936 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.686 5.686 14 C 0.107 3.893 15 H 0.035 0.965 16 C -0.106 4.106 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.100 4.100 20 C -0.087 4.087 21 H 0.069 0.931 22 C 0.059 3.941 23 N -0.849 5.849 24 H 0.032 0.968 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.100 0.900 28 H 0.039 0.961 29 H 0.258 0.742 30 H 0.316 0.684 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.336 0.664 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 6.773 7.400 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.004 4.004 15 H 0.053 0.947 16 C -0.144 4.144 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.138 4.138 20 C -0.107 4.107 21 H 0.088 0.912 22 C -0.071 4.071 23 N -0.377 5.377 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.148 0.852 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.234 7.449 7.125 12.046 hybrid contribution 0.132 -1.135 -0.462 1.233 sum -6.101 6.314 6.663 11.022 Atomic orbital electron populations 1.21893 0.99797 0.99636 0.99298 1.21814 0.91066 1.00787 1.03025 1.19224 0.95516 0.89693 0.84314 0.98008 1.21269 0.91325 1.35898 1.04035 0.91775 1.24966 0.97878 0.95840 0.96001 1.69872 1.34547 1.39757 1.09633 0.86597 0.86107 0.78371 0.76912 1.20877 1.21517 1.19969 1.60784 1.38185 1.01397 1.31558 1.21357 0.93900 0.89482 0.95702 0.94745 1.21582 0.98058 0.92221 1.02514 1.21588 0.98257 0.97249 0.98806 1.21557 0.95890 0.98717 0.99422 1.21407 0.96599 0.94329 1.01498 1.21360 0.93625 0.95328 1.00338 0.91215 1.21962 0.92990 0.96969 0.95217 1.58750 1.06270 1.66654 1.06036 0.94951 0.93882 0.94443 0.88217 0.94203 0.93201 0.86435 0.89791 0.92565 0.92542 0.92718 0.92460 0.92931 0.91468 0.92740 0.91431 0.95025 0.85223 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.65 37.16 0.36 -2.51 16 2 C -0.13 -3.01 5.33 -26.73 -0.14 -3.15 16 3 C 0.22 5.39 2.03 -68.87 -0.14 5.25 16 4 H 0.00 0.06 7.33 -51.93 -0.38 -0.32 16 5 C -0.49 -13.17 7.47 -34.44 -0.26 -13.43 16 6 H 0.06 1.76 6.91 -52.49 -0.36 1.40 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.49 11.29 55.43 0.63 -24.86 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.69 -14.26 6.16 -100.96 -0.62 -14.88 16 14 C 0.11 1.98 1.98 -67.72 -0.13 1.84 16 15 H 0.03 0.71 7.33 -51.93 -0.38 0.33 16 16 C -0.11 -1.96 5.14 -26.73 -0.14 -2.09 16 17 C -0.12 -1.86 5.92 -26.73 -0.16 -2.02 16 18 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 19 C -0.10 -1.38 5.09 -26.76 -0.14 -1.52 16 20 C -0.09 -1.31 1.97 -90.65 -0.18 -1.49 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 22 C 0.06 0.82 6.05 -3.82 -0.02 0.80 16 23 N -0.85 -9.62 9.08 -10.37 -0.09 -9.71 16 24 H 0.03 0.55 5.98 -51.93 -0.31 0.24 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.32 6.04 4.05 -39.29 -0.16 5.88 16 31 H 0.08 1.83 6.15 -51.93 -0.32 1.51 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 38 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.46 5.34 -51.93 -0.28 0.19 16 41 H 0.34 3.25 9.08 -39.29 -0.36 2.90 16 42 H 0.34 3.50 8.99 -39.29 -0.35 3.14 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -27.55 311.97 -9.01 -36.56 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.40 Total: 10.41 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -1.20 Total: -18.70 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.09 Total: -49.45 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.55 -9.01 -36.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251379465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.947 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds