Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47417 * 2 1 4 4 H 1.09001 * 109.46943 * 305.68454 * 3 2 1 5 5 C 1.50700 * 109.47100 * 185.68348 * 3 2 1 6 6 H 1.08002 * 119.99914 * 239.99780 * 5 3 2 7 7 C 1.37870 * 120.00000 * 60.00052 * 5 3 2 8 8 N 1.31510 * 120.00068 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47175 * 89.99706 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00272 * 9 7 5 12 12 H 1.48502 * 109.46786 * 329.99867 * 9 7 5 13 13 N 1.46900 * 109.46924 * 65.68148 * 3 2 1 14 14 C 1.46901 * 110.99855 * 208.44522 * 13 3 2 15 15 H 1.08997 * 109.47383 * 31.89101 * 14 13 3 16 16 C 1.53001 * 109.46885 * 271.89284 * 14 13 3 17 17 C 1.53003 * 109.47423 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47077 * 59.99474 * 17 16 14 19 19 C 1.52997 * 109.47577 * 300.00860 * 18 17 16 20 20 C 1.52994 * 109.47243 * 151.89467 * 14 13 3 21 21 H 1.08997 * 109.47510 * 60.00011 * 20 14 13 22 22 C 1.53001 * 109.47030 * 299.99728 * 20 14 13 23 23 N 1.46903 * 109.47203 * 175.00032 * 22 20 14 24 24 H 1.08998 * 109.47007 * 294.01383 * 1 2 3 25 25 H 1.08994 * 109.47412 * 54.01448 * 1 2 3 26 26 H 1.09002 * 109.47300 * 174.02090 * 1 2 3 27 27 H 1.08999 * 109.47206 * 239.99690 * 2 1 3 28 28 H 1.09005 * 109.46951 * 120.00023 * 2 1 3 29 29 H 0.97007 * 119.99900 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00556 * 332.39688 * 13 3 2 31 31 H 1.09004 * 109.47215 * 60.00208 * 16 14 13 32 32 H 1.08997 * 109.47205 * 299.99583 * 16 14 13 33 33 H 1.09007 * 109.46545 * 300.00516 * 17 16 14 34 34 H 1.08996 * 109.47188 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.46747 * 60.00296 * 18 17 16 36 36 H 1.08993 * 109.47355 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47615 * 180.02562 * 19 18 17 38 38 H 1.09007 * 109.46867 * 300.00005 * 19 18 17 39 39 H 1.08999 * 109.47308 * 294.99668 * 22 20 14 40 40 H 1.09004 * 109.47210 * 55.00430 * 22 20 14 41 41 H 1.00906 * 110.99933 * 179.97438 * 23 22 20 42 42 H 1.00899 * 111.00260 * 303.95722 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 -0.8347 5 6 3.5404 1.4447 -0.1407 6 1 4.1544 1.8862 0.6303 7 6 4.1293 0.8832 -1.2537 8 7 3.3816 0.3452 -2.1924 9 14 5.9892 0.8866 -1.4285 10 1 6.5460 -0.3472 -0.8180 11 1 6.3509 0.9335 -2.8680 12 1 6.5489 2.0765 -0.7384 13 7 1.6655 2.0942 1.2621 14 6 1.5052 3.5429 1.0791 15 1 1.1424 3.7439 0.0711 16 6 2.8544 4.2351 1.2829 17 6 2.6874 5.7441 1.0930 18 6 1.6807 6.2783 2.1138 19 6 0.3315 5.5861 1.9101 20 6 0.4984 4.0776 2.0996 21 1 0.8613 3.8767 3.1076 22 6 -0.8507 3.3854 1.8958 23 7 -1.7827 3.8094 2.9492 24 1 -0.3633 0.4182 0.9387 25 1 -0.3634 0.6038 -0.8315 26 1 -0.3634 -1.0221 -0.1070 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.7960 -0.0502 -2.9753 30 1 0.8280 1.6835 1.6467 31 1 3.5716 3.8542 0.5559 32 1 3.2172 4.0342 2.2909 33 1 2.3242 5.9453 0.0851 34 1 3.6486 6.2371 1.2377 35 1 2.0437 6.0769 3.1217 36 1 1.5613 7.3531 1.9782 37 1 -0.3858 5.9670 2.6371 38 1 -0.0316 5.7874 0.9021 39 1 -1.2556 3.6583 0.9212 40 1 -0.7157 2.3048 1.9436 41 1 -2.6821 3.3659 2.8363 42 1 -1.4011 3.6259 3.8650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251379465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = -47.031170 kcal Electronic energy + Delta-G solvation = -18705.681638 eV Core-core repulsion = 16104.254049 eV Total energy + Delta-G solvation = -2601.427588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33297 -37.34822 -35.50275 -34.23090 -32.85591 -31.11051 -29.60758 -27.94942 -25.48960 -24.69255 -22.66331 -21.78877 -21.36269 -20.56298 -18.30060 -17.17595 -16.78081 -16.37080 -15.89330 -15.54339 -15.14141 -15.03416 -14.73586 -14.45280 -14.44904 -13.76148 -13.43833 -13.25411 -12.92419 -12.84188 -12.70358 -12.67033 -12.49304 -12.15613 -11.99789 -11.78287 -11.62103 -11.55844 -11.38626 -10.98846 -10.97680 -10.63514 -10.39097 -9.55798 -8.94935 -8.04243 -6.14179 1.40100 1.41048 1.50968 2.44409 3.20343 3.55143 3.62965 3.86180 3.98967 4.10666 4.30938 4.41422 4.47911 4.51093 4.55775 4.63763 4.66403 4.71123 4.71770 4.81306 4.89208 5.05731 5.08530 5.19133 5.24438 5.31314 5.34876 5.37899 5.41088 5.42959 5.57633 5.62100 5.70520 5.79287 5.93508 6.21771 6.40308 6.58880 6.65296 6.99295 7.05873 7.53871 8.98979 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.008264 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.873277 B = 3387.193637 C = 4403.252495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.229 3.771 4 H -0.035 1.035 5 C -0.499 4.499 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.685 5.685 14 C 0.107 3.893 15 H 0.008 0.992 16 C -0.103 4.103 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.095 4.095 20 C -0.077 4.077 21 H 0.074 0.926 22 C 0.067 3.933 23 N -0.842 5.842 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.258 0.742 30 H 0.327 0.673 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.349 0.651 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 7.734 9.078 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.120 3.880 4 H -0.018 1.018 5 C -0.537 4.537 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.318 5.318 14 C -0.003 4.003 15 H 0.026 0.974 16 C -0.141 4.141 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.133 4.133 20 C -0.097 4.097 21 H 0.092 0.908 22 C -0.065 4.065 23 N -0.373 5.373 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.162 0.838 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.972 8.413 8.826 14.046 hybrid contribution 0.347 -1.421 -0.973 1.757 sum -6.625 6.993 7.853 12.428 Atomic orbital electron populations 1.21747 0.96432 1.01048 1.00213 1.21644 0.94117 0.99384 1.01185 1.18959 0.94121 0.90277 0.84599 1.01788 1.21515 0.92780 1.35573 1.03872 0.92790 1.25666 1.01900 0.95699 0.95836 1.70004 1.36010 1.40368 1.09958 0.85675 0.81357 0.78436 0.76873 1.20298 1.21175 1.19652 1.60693 1.38961 1.02726 1.29446 1.21376 0.95122 0.88211 0.95629 0.97433 1.21497 0.96946 0.94616 1.01035 1.21550 0.99802 0.94836 0.99300 1.21528 0.94674 0.99861 0.98902 1.21378 0.97271 0.93108 1.01524 1.21242 0.93117 0.96395 0.98898 0.90799 1.21771 0.92816 0.96202 0.95683 1.58669 1.06306 1.66547 1.05768 0.92656 0.94669 0.92395 0.91405 0.94552 0.93284 0.85258 0.93898 0.92558 0.93329 0.91523 0.91601 0.90677 0.89895 0.93502 0.92466 0.95890 0.83831 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.65 71.98 0.69 -4.48 16 2 C -0.12 -5.94 5.33 30.59 0.16 -5.78 16 3 C 0.23 11.59 2.03 44.17 0.09 11.68 16 4 H -0.04 -2.03 7.33 -2.39 -0.02 -2.05 16 5 C -0.50 -27.88 7.47 25.60 0.19 -27.69 16 6 H 0.05 3.06 6.91 -2.91 -0.02 3.04 16 7 C 0.01 0.36 5.29 84.65 0.45 0.81 16 8 N -0.92 -53.90 11.29 21.44 0.24 -53.65 16 9 Si 0.95 44.93 29.54 68.60 2.03 46.95 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.68 -28.79 6.16 -473.32 -2.92 -31.71 16 14 C 0.11 4.03 1.98 44.91 0.09 4.12 16 15 H 0.01 0.33 7.33 -2.39 -0.02 0.31 16 16 C -0.10 -3.85 5.14 30.60 0.16 -3.69 16 17 C -0.12 -3.48 5.92 30.60 0.18 -3.30 16 18 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 19 C -0.09 -2.39 5.09 30.58 0.16 -2.24 16 20 C -0.08 -2.20 1.97 -10.81 -0.02 -2.22 16 21 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 22 C 0.07 1.73 6.05 86.30 0.52 2.25 16 23 N -0.84 -16.71 9.08 -186.71 -1.69 -18.40 16 24 H 0.05 1.82 5.98 -2.39 -0.01 1.80 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 3.69 5.94 -2.39 -0.01 3.68 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 30 H 0.33 12.30 4.05 -89.69 -0.36 11.93 16 31 H 0.04 1.94 6.15 -2.38 -0.01 1.92 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.90 7.75 -2.39 -0.02 1.88 16 38 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.02 0.64 5.34 -2.38 -0.01 0.62 16 41 H 0.35 5.74 9.08 -89.69 -0.81 4.93 16 42 H 0.35 6.06 8.99 -89.69 -0.81 5.25 16 Total: -1.00 -60.80 311.97 -0.47 -61.27 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.98 Total: 28.63 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 2.85 Total: -33.08 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -4.37 Total: -103.77 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -60.80 -0.47 -61.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251379465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.236 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds