Wall clock time and date at job start Mon Mar 30 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46490 * 2 1 4 4 H 1.08994 * 109.47233 * 303.65282 * 3 2 1 5 5 C 1.50709 * 109.46649 * 183.65780 * 3 2 1 6 6 H 1.08000 * 119.99540 * 239.99604 * 5 3 2 7 7 C 1.37872 * 120.00014 * 59.99722 * 5 3 2 8 8 N 1.31516 * 120.00164 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99878 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47186 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46892 * 120.00340 * 9 7 5 12 12 H 1.48496 * 109.47222 * 240.00355 * 9 7 5 13 13 N 1.46902 * 109.47371 * 63.66009 * 3 2 1 14 14 C 1.46903 * 110.99676 * 203.39053 * 13 3 2 15 15 H 1.09000 * 109.47188 * 325.35776 * 14 13 3 16 16 C 1.52993 * 109.47125 * 85.36254 * 14 13 3 17 17 C 1.53001 * 109.47348 * 59.99676 * 16 14 13 18 18 C 1.53000 * 109.46939 * 60.00120 * 17 16 14 19 19 C 1.53000 * 109.47218 * 299.99668 * 18 17 16 20 20 C 1.53001 * 109.46895 * 60.00305 * 19 18 17 21 21 H 1.08997 * 109.47309 * 59.99736 * 20 19 18 22 22 C 1.52993 * 109.47369 * 180.02562 * 20 19 18 23 23 N 1.46904 * 109.46867 * 294.99653 * 22 20 19 24 24 H 1.09004 * 109.46702 * 174.72114 * 1 2 3 25 25 H 1.09001 * 109.47181 * 294.71789 * 1 2 3 26 26 H 1.08998 * 109.47042 * 54.72053 * 1 2 3 27 27 H 1.08992 * 109.47098 * 240.00256 * 2 1 3 28 28 H 1.08997 * 109.47260 * 119.99698 * 2 1 3 29 29 H 0.97000 * 119.99715 * 179.97438 * 8 7 5 30 30 H 1.00902 * 111.00215 * 79.43336 * 13 3 2 31 31 H 1.09005 * 109.46994 * 179.97438 * 16 14 13 32 32 H 1.08999 * 109.47254 * 299.99536 * 16 14 13 33 33 H 1.08998 * 109.47093 * 180.02562 * 17 16 14 34 34 H 1.08997 * 109.47309 * 300.00250 * 17 16 14 35 35 H 1.08993 * 109.47275 * 60.00371 * 18 17 16 36 36 H 1.09000 * 109.47167 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47470 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47447 * 300.00826 * 19 18 17 39 39 H 1.09002 * 109.47528 * 54.99622 * 22 20 19 40 40 H 1.09005 * 109.47758 * 175.00165 * 22 20 19 41 41 H 1.00900 * 111.00111 * 179.97438 * 23 22 20 42 42 H 1.00899 * 111.00316 * 303.95551 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6241 1.9749 -0.8554 5 6 3.5443 1.4436 -0.0907 6 1 4.1322 1.8943 0.6952 7 6 4.1698 0.8691 -1.1767 8 7 3.4538 0.3207 -2.1339 9 14 6.0344 0.8710 -1.2894 10 1 6.6019 1.5454 -0.0942 11 1 6.5281 -0.5282 -1.3487 12 1 6.4556 1.5969 -2.5145 13 7 1.6237 2.1091 1.2412 14 6 1.5855 3.5674 1.0683 15 1 2.3825 3.8739 0.3908 16 6 0.2326 3.9763 0.4825 17 6 -0.8860 3.5460 1.4335 18 6 -0.6914 4.2257 2.7904 19 6 0.6615 3.8167 3.3763 20 6 1.7801 4.2470 2.4252 21 1 1.7518 5.3291 2.2969 22 6 3.1330 3.8376 3.0107 23 7 3.3733 4.5810 4.2548 24 1 -0.3633 -1.0234 -0.0946 25 1 -0.3633 0.4297 0.9335 26 1 -0.3633 0.5935 -0.8389 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8939 -0.0832 -2.8981 30 1 2.2253 1.8516 2.0092 31 1 0.2042 5.0584 0.3546 32 1 0.0940 3.4921 -0.4842 33 1 -1.8499 3.8369 1.0159 34 1 -0.8577 2.4639 1.5618 35 1 -0.7198 5.3076 2.6621 36 1 -1.4880 3.9188 3.4681 37 1 0.8000 4.3006 4.3431 38 1 0.6899 2.7347 3.5045 39 1 3.1291 2.7682 3.2215 40 1 3.9226 4.0638 2.2941 41 1 4.2612 4.3278 4.6616 42 1 3.3177 5.5762 4.0979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251379468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:41 Heat of formation + Delta-G solvation = -31.839146 kcal Electronic energy + Delta-G solvation = -18904.150722 eV Core-core repulsion = 16303.381910 eV Total energy + Delta-G solvation = -2600.768813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.97513 -35.27660 -34.24583 -32.12178 -31.06458 -29.82703 -28.30718 -25.79382 -24.16086 -22.78270 -21.55040 -20.59064 -19.50052 -18.28327 -16.68419 -15.79076 -14.87306 -14.73746 -14.48560 -14.10739 -13.85161 -13.59871 -13.07651 -12.77286 -12.58146 -12.08096 -11.74150 -11.50855 -11.40410 -11.30596 -11.04728 -10.99507 -10.82161 -10.64849 -10.38047 -10.21967 -10.05796 -9.70761 -9.52058 -9.42475 -9.30618 -8.94807 -8.47728 -8.35470 -7.13455 -5.98038 -4.11086 3.23970 3.32901 3.34761 4.38779 4.73958 5.10643 5.21891 5.26177 5.36171 5.53972 5.64170 5.76395 5.88540 5.97532 5.99309 6.14905 6.19982 6.28417 6.33500 6.43473 6.45234 6.53296 6.60225 6.71253 6.76681 6.84140 6.87377 6.93449 7.07675 7.19811 7.24574 7.28196 7.50103 7.56281 7.64949 7.80488 8.13758 8.22008 8.39799 8.74599 9.03746 9.56534 11.01237 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.008934 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.923651 B = 3133.270469 C = 4028.924768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.097 3.903 15 H 0.043 0.957 16 C -0.101 4.101 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.096 4.096 20 C -0.081 4.081 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.849 5.849 24 H 0.022 0.978 25 H 0.048 0.952 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.326 0.674 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.027 0.973 41 H 0.336 0.664 42 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 6.901 8.021 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.309 5.309 14 C -0.014 4.014 15 H 0.061 0.939 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.133 4.133 20 C -0.101 4.101 21 H 0.077 0.923 22 C -0.069 4.069 23 N -0.377 5.377 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.045 0.955 41 H 0.148 0.852 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.532 6.340 7.980 11.597 hybrid contribution 3.009 0.582 -0.825 3.174 sum -2.523 6.922 7.155 10.270 Atomic orbital electron populations 1.21695 0.99001 0.98072 1.00405 1.21483 0.92066 0.99394 1.01488 1.19166 0.92218 0.90988 0.86928 0.94967 1.21918 0.92907 1.37418 1.05799 0.93041 1.24924 0.97693 0.95164 0.95742 1.69889 1.34667 1.38083 1.09630 0.86662 0.86513 0.77713 0.77794 1.20107 1.20998 1.21142 1.60953 1.56859 1.04459 1.08652 1.21280 0.95944 0.90247 0.93912 0.93900 1.21458 0.95163 0.98497 0.98848 1.21407 0.96583 1.02198 0.94500 1.21494 0.97336 0.99216 0.97105 1.21338 0.92895 1.01771 0.97313 1.21272 0.94150 0.99035 0.95615 0.92325 1.21920 0.96408 0.98977 0.89611 1.58767 1.39329 1.10377 1.29225 0.95920 0.93327 0.94521 0.89393 0.95288 0.93026 0.85594 0.93647 0.92163 0.94035 0.90158 0.93444 0.93122 0.92347 0.91310 0.90472 0.95512 0.85224 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.72 37.16 0.36 -2.38 16 2 C -0.11 -2.50 5.44 -26.73 -0.15 -2.64 16 3 C 0.22 5.14 1.81 -68.86 -0.12 5.01 16 4 H 0.03 0.87 7.14 -51.93 -0.37 0.50 16 5 C -0.54 -14.21 8.19 -34.44 -0.28 -14.49 16 6 H 0.05 1.35 7.76 -52.49 -0.41 0.94 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 8 N -0.88 -24.79 11.30 55.43 0.63 -24.16 16 9 Si 0.88 21.02 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -13.41 4.06 -100.95 -0.41 -13.82 16 14 C 0.10 1.76 2.11 -67.71 -0.14 1.62 16 15 H 0.04 0.90 7.57 -51.93 -0.39 0.51 16 16 C -0.10 -1.71 5.52 -26.73 -0.15 -1.86 16 17 C -0.11 -1.67 5.77 -26.73 -0.15 -1.82 16 18 C -0.11 -1.57 5.92 -26.73 -0.16 -1.72 16 19 C -0.10 -1.39 4.93 -26.73 -0.13 -1.52 16 20 C -0.08 -1.24 2.10 -90.62 -0.19 -1.43 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 C 0.06 0.93 5.82 -3.83 -0.02 0.91 16 23 N -0.85 -10.54 9.08 -10.37 -0.09 -10.63 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.94 7.06 -51.93 -0.37 0.57 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 2.34 5.98 -51.93 -0.31 2.03 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.33 6.53 5.80 -39.29 -0.23 6.30 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.13 7.43 -51.93 -0.39 0.74 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.36 6.80 -51.93 -0.35 1.01 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.83 7.75 -51.93 -0.40 0.42 16 38 H 0.07 1.10 7.47 -51.93 -0.39 0.71 16 39 H 0.08 1.27 6.42 -51.93 -0.33 0.94 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.34 3.71 9.08 -39.29 -0.36 3.35 16 42 H 0.33 3.69 8.99 -39.29 -0.35 3.33 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -26.46 314.76 -8.98 -35.43 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.59 Total: 11.05 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -1.23 Total: -18.61 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.12 Total: -48.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.46 -8.98 -35.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251379468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.595 kcal (2) G-P(sol) polarization free energy of solvation -26.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds