Wall clock time and date at job start Mon Mar 30 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46490 * 2 1 4 4 H 1.08994 * 109.47233 * 303.65282 * 3 2 1 5 5 C 1.50709 * 109.46649 * 183.65780 * 3 2 1 6 6 H 1.08000 * 119.99540 * 239.99604 * 5 3 2 7 7 C 1.37872 * 120.00014 * 59.99722 * 5 3 2 8 8 N 1.31516 * 120.00164 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99878 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47186 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46892 * 120.00340 * 9 7 5 12 12 H 1.48496 * 109.47222 * 240.00355 * 9 7 5 13 13 N 1.46902 * 109.47371 * 63.66009 * 3 2 1 14 14 C 1.46903 * 110.99676 * 203.39053 * 13 3 2 15 15 H 1.09000 * 109.47188 * 325.35776 * 14 13 3 16 16 C 1.52993 * 109.47125 * 85.36254 * 14 13 3 17 17 C 1.53001 * 109.47348 * 59.99676 * 16 14 13 18 18 C 1.53000 * 109.46939 * 60.00120 * 17 16 14 19 19 C 1.53000 * 109.47218 * 299.99668 * 18 17 16 20 20 C 1.53001 * 109.46895 * 60.00305 * 19 18 17 21 21 H 1.08997 * 109.47309 * 59.99736 * 20 19 18 22 22 C 1.52993 * 109.47369 * 180.02562 * 20 19 18 23 23 N 1.46904 * 109.46867 * 294.99653 * 22 20 19 24 24 H 1.09004 * 109.46702 * 174.72114 * 1 2 3 25 25 H 1.09001 * 109.47181 * 294.71789 * 1 2 3 26 26 H 1.08998 * 109.47042 * 54.72053 * 1 2 3 27 27 H 1.08992 * 109.47098 * 240.00256 * 2 1 3 28 28 H 1.08997 * 109.47260 * 119.99698 * 2 1 3 29 29 H 0.97000 * 119.99715 * 179.97438 * 8 7 5 30 30 H 1.00902 * 111.00215 * 79.43336 * 13 3 2 31 31 H 1.09005 * 109.46994 * 179.97438 * 16 14 13 32 32 H 1.08999 * 109.47254 * 299.99536 * 16 14 13 33 33 H 1.08998 * 109.47093 * 180.02562 * 17 16 14 34 34 H 1.08997 * 109.47309 * 300.00250 * 17 16 14 35 35 H 1.08993 * 109.47275 * 60.00371 * 18 17 16 36 36 H 1.09000 * 109.47167 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47470 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47447 * 300.00826 * 19 18 17 39 39 H 1.09002 * 109.47528 * 54.99622 * 22 20 19 40 40 H 1.09005 * 109.47758 * 175.00165 * 22 20 19 41 41 H 1.00900 * 111.00111 * 179.97438 * 23 22 20 42 42 H 1.00899 * 111.00316 * 303.95551 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6241 1.9749 -0.8554 5 6 3.5443 1.4436 -0.0907 6 1 4.1322 1.8943 0.6952 7 6 4.1698 0.8691 -1.1767 8 7 3.4538 0.3207 -2.1339 9 14 6.0344 0.8710 -1.2894 10 1 6.6019 1.5454 -0.0942 11 1 6.5281 -0.5282 -1.3487 12 1 6.4556 1.5969 -2.5145 13 7 1.6237 2.1091 1.2412 14 6 1.5855 3.5674 1.0683 15 1 2.3825 3.8739 0.3908 16 6 0.2326 3.9763 0.4825 17 6 -0.8860 3.5460 1.4335 18 6 -0.6914 4.2257 2.7904 19 6 0.6615 3.8167 3.3763 20 6 1.7801 4.2470 2.4252 21 1 1.7518 5.3291 2.2969 22 6 3.1330 3.8376 3.0107 23 7 3.3733 4.5810 4.2548 24 1 -0.3633 -1.0234 -0.0946 25 1 -0.3633 0.4297 0.9335 26 1 -0.3633 0.5935 -0.8389 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8939 -0.0832 -2.8981 30 1 2.2253 1.8516 2.0092 31 1 0.2042 5.0584 0.3546 32 1 0.0940 3.4921 -0.4842 33 1 -1.8499 3.8369 1.0159 34 1 -0.8577 2.4639 1.5618 35 1 -0.7198 5.3076 2.6621 36 1 -1.4880 3.9188 3.4681 37 1 0.8000 4.3006 4.3431 38 1 0.6899 2.7347 3.5045 39 1 3.1291 2.7682 3.2215 40 1 3.9226 4.0638 2.2941 41 1 4.2612 4.3278 4.6616 42 1 3.3177 5.5762 4.0979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251379468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:41 Heat of formation + Delta-G solvation = -48.206168 kcal Electronic energy + Delta-G solvation = -18904.860450 eV Core-core repulsion = 16303.381910 eV Total energy + Delta-G solvation = -2601.478540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36779 -37.04326 -35.42842 -34.00317 -32.74783 -31.05040 -29.85941 -27.68892 -25.39750 -24.65064 -22.86925 -21.88052 -21.32047 -19.68147 -18.67617 -17.10394 -16.72034 -16.18864 -15.74547 -15.68306 -15.17830 -14.95486 -14.66326 -14.51378 -14.04222 -13.52659 -13.25585 -13.16706 -13.07398 -12.87631 -12.70580 -12.57244 -12.47289 -12.21577 -12.05582 -11.67835 -11.53927 -11.41020 -11.10747 -11.03767 -10.80451 -10.63632 -10.42867 -9.56821 -8.90811 -8.02848 -6.25505 1.33303 1.36432 1.45181 2.38322 3.15226 3.61459 3.73084 3.89992 4.10859 4.15530 4.39445 4.55007 4.57194 4.64484 4.70865 4.74320 4.79337 4.86270 4.89972 4.95113 5.00140 5.15653 5.17278 5.23815 5.30016 5.44188 5.50722 5.52043 5.55913 5.61685 5.63996 5.70203 5.79029 5.88429 6.16535 6.21495 6.26012 6.47207 6.63517 6.92217 7.09430 7.46073 8.91996 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.008934 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.923651 B = 3133.270469 C = 4028.924768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.226 3.774 4 H -0.003 1.003 5 C -0.551 4.551 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.662 5.662 14 C 0.097 3.903 15 H 0.007 0.993 16 C -0.099 4.099 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.088 4.088 20 C -0.073 4.073 21 H 0.072 0.928 22 C 0.069 3.931 23 N -0.841 5.841 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.326 0.674 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.006 0.994 41 H 0.346 0.654 42 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 7.956 9.732 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.117 3.883 4 H 0.015 0.985 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.293 5.293 14 C -0.014 4.014 15 H 0.025 0.975 16 C -0.138 4.138 17 C -0.142 4.142 18 C -0.146 4.146 19 C -0.125 4.125 20 C -0.092 4.092 21 H 0.091 0.909 22 C -0.062 4.062 23 N -0.371 5.371 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.159 0.841 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.989 7.409 9.711 13.604 hybrid contribution 3.153 0.289 -1.358 3.445 sum -2.836 7.698 8.353 11.708 Atomic orbital electron populations 1.21537 0.96352 0.99187 1.00697 1.21345 0.94406 0.98603 0.99724 1.18889 0.90907 0.91179 0.87372 0.98458 1.22215 0.94280 1.36923 1.05620 0.93458 1.25630 1.01722 0.95090 0.95613 1.70019 1.36165 1.38795 1.10062 0.85717 0.81721 0.77692 0.77722 1.19609 1.20628 1.21006 1.60898 1.56044 1.05580 1.06764 1.21322 0.95660 0.89160 0.95258 0.97530 1.21431 0.95070 0.99335 0.97919 1.21350 0.96461 1.01184 0.95190 1.21467 0.97175 0.99884 0.96079 1.21269 0.92955 1.00832 0.97491 1.21185 0.94717 0.99379 0.93897 0.90927 1.21717 0.95783 0.98434 0.90263 1.58699 1.40107 1.10969 1.27336 0.94142 0.92073 0.95299 0.92470 0.95581 0.93072 0.85609 0.91849 0.94934 0.92468 0.92009 0.91989 0.91457 0.91161 0.92870 0.92060 0.97576 0.84110 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.72 71.98 0.70 -4.18 16 2 C -0.10 -4.92 5.44 30.60 0.17 -4.76 16 3 C 0.23 11.13 1.81 44.17 0.08 11.21 16 4 H 0.00 -0.14 7.14 -2.39 -0.02 -0.16 16 5 C -0.55 -29.71 8.19 25.60 0.21 -29.50 16 6 H 0.05 2.53 7.76 -2.91 -0.02 2.51 16 7 C 0.02 1.05 5.30 84.65 0.45 1.50 16 8 N -0.91 -52.46 11.30 21.45 0.24 -52.22 16 9 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 N -0.66 -26.62 4.06 -473.29 -1.92 -28.54 16 14 C 0.10 3.53 2.11 44.92 0.09 3.63 16 15 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 16 C -0.10 -3.30 5.52 30.59 0.17 -3.13 16 17 C -0.10 -2.99 5.77 30.59 0.18 -2.81 16 18 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 19 C -0.09 -2.33 4.93 30.59 0.15 -2.18 16 20 C -0.07 -2.11 2.10 -10.79 -0.02 -2.13 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 C 0.07 2.04 5.82 86.30 0.50 2.54 16 23 N -0.84 -19.08 9.08 -186.71 -1.70 -20.77 16 24 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.06 2.31 7.06 -2.39 -0.02 2.29 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 3.13 5.98 -2.39 -0.01 3.11 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.33 13.20 5.80 -89.69 -0.52 12.68 16 31 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.03 1.24 7.43 -2.39 -0.02 1.22 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 2.01 6.80 -2.39 -0.02 1.99 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.74 7.75 -2.39 -0.02 1.72 16 38 H 0.05 1.59 7.47 -2.39 -0.02 1.58 16 39 H 0.06 2.00 6.42 -2.39 -0.02 1.99 16 40 H 0.01 0.20 8.14 -2.38 -0.02 0.18 16 41 H 0.35 6.93 9.08 -89.69 -0.81 6.11 16 42 H 0.35 6.69 8.99 -89.69 -0.81 5.89 16 Total: -1.00 -57.59 314.76 0.37 -57.22 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -1.14 Total: 30.81 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 2.86 Total: -32.26 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -3.38 Total: -101.53 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -57.59 0.37 -57.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251379468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.015 kcal (2) G-P(sol) polarization free energy of solvation -57.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds