Wall clock time and date at job start Mon Mar 30 2020 03:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47032 * 2 1 4 4 H 1.09000 * 109.47362 * 305.63975 * 3 2 1 5 5 C 1.50699 * 109.47049 * 185.63800 * 3 2 1 6 6 H 1.08001 * 120.00228 * 240.00199 * 5 3 2 7 7 C 1.37881 * 119.99728 * 60.00348 * 5 3 2 8 8 N 1.31510 * 120.00129 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99906 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47091 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47248 * 119.99722 * 9 7 5 12 12 H 1.48503 * 109.46980 * 240.00084 * 9 7 5 13 13 N 1.46902 * 109.47149 * 65.63938 * 3 2 1 14 14 C 1.46900 * 111.00135 * 205.83119 * 13 3 2 15 15 H 1.09002 * 109.47261 * 323.98381 * 14 13 3 16 16 C 1.52995 * 109.47033 * 83.98745 * 14 13 3 17 17 C 1.53001 * 109.47219 * 203.98771 * 14 13 3 18 18 C 1.53001 * 109.47313 * 65.00155 * 17 14 13 19 19 H 1.08996 * 110.33324 * 55.79839 * 18 17 14 20 20 C 1.54901 * 110.37489 * 178.17402 * 18 17 14 21 21 C 1.55140 * 101.65530 * 155.89707 * 20 18 17 22 22 C 1.54325 * 103.01993 * 324.34657 * 21 20 18 23 23 N 1.47446 * 107.22922 * 22.28208 * 22 21 20 24 24 H 1.09007 * 109.47357 * 54.07640 * 1 2 3 25 25 H 1.09006 * 109.47479 * 294.07690 * 1 2 3 26 26 H 1.08999 * 109.47225 * 174.07584 * 1 2 3 27 27 H 1.08995 * 109.46944 * 119.99975 * 2 1 3 28 28 H 1.09004 * 109.46767 * 240.00293 * 2 1 3 29 29 H 0.96998 * 120.00011 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00355 * 329.78824 * 13 3 2 31 31 H 1.09000 * 109.47271 * 304.70077 * 16 14 13 32 32 H 1.09005 * 109.47089 * 64.70391 * 16 14 13 33 33 H 1.08999 * 109.47269 * 184.70162 * 16 14 13 34 34 H 1.08999 * 109.47094 * 185.00140 * 17 14 13 35 35 H 1.09000 * 109.46999 * 305.00092 * 17 14 13 36 36 H 1.08998 * 110.99589 * 273.99253 * 20 18 17 37 37 H 1.09006 * 110.99014 * 37.80603 * 20 18 17 38 38 H 1.09002 * 110.71028 * 205.96651 * 21 20 18 39 39 H 1.09003 * 110.85590 * 82.79920 * 21 20 18 40 40 H 1.09001 * 109.88699 * 262.87580 * 22 21 20 41 41 H 1.08995 * 109.88724 * 141.68477 * 22 21 20 42 42 H 1.00899 * 110.99728 * 238.71755 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5965 1.9846 -0.8352 5 6 3.5404 1.4447 -0.1396 6 1 4.1539 1.8864 0.6318 7 6 4.1301 0.8830 -1.2522 8 7 3.3832 0.3447 -2.1912 9 14 5.9902 0.8851 -1.4249 10 1 6.5965 1.5459 -0.2412 11 1 6.4804 -0.5135 -1.5168 12 1 6.3722 1.6255 -2.6542 13 7 1.6645 2.0945 1.2617 14 6 1.5647 3.5503 1.0926 15 1 2.3299 3.8883 0.3936 16 6 0.1810 3.9065 0.5454 17 6 1.7705 4.2362 2.4447 18 6 3.1980 3.9825 2.9333 19 1 3.9187 4.3136 2.1856 20 6 3.4436 4.7066 4.2804 21 6 4.5977 3.8634 4.8836 22 6 4.2605 2.4305 4.4202 23 7 3.3914 2.5481 3.2349 24 1 -0.3634 0.6030 -0.8322 25 1 -0.3634 0.4193 0.9383 26 1 -0.3633 -1.0222 -0.1061 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.7981 -0.0508 -2.9737 30 1 0.8037 1.7127 1.6240 31 1 0.0011 3.3527 -0.3761 32 1 -0.5792 3.6443 1.2812 33 1 0.1353 4.9762 0.3412 34 1 1.6087 5.3087 2.3364 35 1 1.0618 3.8331 3.1681 36 1 3.7570 5.7378 4.1181 37 1 2.5572 4.6646 4.9136 38 1 4.5939 3.9274 5.9718 39 1 5.5606 4.1812 4.4836 40 1 3.7357 1.8981 5.2135 41 1 5.1760 1.9006 4.1576 42 1 2.5065 2.0882 3.3883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251379522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:12 Heat of formation + Delta-G solvation = -26.981282 kcal Electronic energy + Delta-G solvation = -18708.046965 eV Core-core repulsion = 16107.488806 eV Total energy + Delta-G solvation = -2600.558160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.81141 -38.12223 -35.36654 -33.50139 -31.27389 -30.63056 -29.85919 -27.82023 -26.17114 -24.53739 -21.94700 -21.57805 -21.28971 -20.92654 -18.10334 -16.94354 -16.80669 -16.37225 -15.83824 -15.54636 -14.90085 -14.63729 -14.37427 -14.15907 -13.91190 -13.64750 -13.30597 -13.05051 -13.02818 -12.78156 -12.67915 -12.45119 -12.36246 -12.18764 -11.91686 -11.77913 -11.57765 -11.48335 -11.44355 -11.38500 -10.99837 -10.78975 -10.30169 -8.74884 -8.61736 -7.91971 -5.98321 1.40536 1.43594 1.56250 2.52950 3.33105 3.57179 3.82774 3.94091 3.98169 4.17834 4.40368 4.44696 4.57356 4.59786 4.62632 4.65794 4.75482 4.78480 4.82291 4.86878 4.97860 5.04065 5.09688 5.17629 5.18976 5.21387 5.29294 5.33031 5.37597 5.48791 5.52872 5.62993 5.78911 5.93958 6.09381 6.52324 6.58554 6.76433 7.07621 7.23116 7.26423 7.69446 9.10986 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.009496 C = 0.007215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.318368 B = 2947.761850 C = 3879.913743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.235 3.765 4 H -0.038 1.038 5 C -0.475 4.475 6 H 0.064 0.936 7 C -0.001 4.001 8 N -0.930 5.930 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.652 5.652 14 C 0.091 3.909 15 H 0.040 0.960 16 C -0.171 4.171 17 C -0.096 4.096 18 C 0.093 3.907 19 H 0.044 0.956 20 C -0.142 4.142 21 C -0.136 4.136 22 C 0.041 3.959 23 N -0.666 5.666 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.252 0.748 30 H 0.320 0.680 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 7.477 12.692 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.126 3.874 4 H -0.021 1.021 5 C -0.514 4.514 6 H 0.082 0.918 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.283 5.283 14 C -0.020 4.020 15 H 0.058 0.942 16 C -0.230 4.230 17 C -0.135 4.135 18 C -0.017 4.017 19 H 0.062 0.938 20 C -0.181 4.181 21 C -0.174 4.174 22 C -0.089 4.089 23 N -0.298 5.298 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.429 7.279 12.286 14.686 hybrid contribution -0.138 0.005 -0.672 0.686 sum -3.567 7.284 11.614 14.165 Atomic orbital electron populations 1.21726 0.96547 1.00613 1.00413 1.21571 0.93893 0.99669 1.00792 1.18779 0.93627 0.89916 0.85069 1.02086 1.21710 0.93257 1.33521 1.02956 0.91804 1.25614 1.01032 0.96644 0.96364 1.70025 1.35402 1.41687 1.10139 0.85702 0.82675 0.77099 0.77228 1.19866 1.21350 1.21541 1.60615 1.35866 1.02150 1.29663 1.21409 0.94837 0.89536 0.96202 0.94177 1.22435 0.98396 1.01672 1.00542 1.21746 0.95665 1.00053 0.96009 1.22246 0.95986 0.88106 0.95392 0.93790 1.23184 0.98629 0.99551 0.96726 1.22736 0.98591 0.95064 1.01019 1.22677 0.97588 0.96852 0.91769 1.61587 1.20166 1.12219 1.35854 0.94927 0.92053 0.93061 0.94616 0.92150 0.93856 0.86222 0.95152 0.91278 0.91692 0.90264 0.91054 0.90490 0.90395 0.89759 0.92298 0.92761 0.93654 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.64 71.98 0.69 -4.37 16 2 C -0.12 -5.70 5.35 30.59 0.16 -5.53 16 3 C 0.23 11.54 1.82 44.17 0.08 11.62 16 4 H -0.04 -2.14 7.02 -2.39 -0.02 -2.16 16 5 C -0.48 -26.61 8.54 25.60 0.22 -26.39 16 6 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 7 C 0.00 -0.05 5.29 84.66 0.45 0.40 16 8 N -0.93 -55.41 11.29 21.45 0.24 -55.17 16 9 Si 0.94 46.73 29.54 68.60 2.03 48.75 16 10 H -0.27 -13.46 7.11 99.48 0.71 -12.76 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 13 N -0.65 -25.26 3.61 -473.32 -1.71 -26.97 16 14 C 0.09 3.15 2.40 44.91 0.11 3.26 16 15 H 0.04 1.72 7.68 -2.39 -0.02 1.70 16 16 C -0.17 -5.13 9.16 71.98 0.66 -4.47 16 17 C -0.10 -2.60 4.41 30.59 0.14 -2.46 16 18 C 0.09 2.79 3.38 45.38 0.15 2.94 16 19 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 20 C -0.14 -3.22 6.49 31.98 0.21 -3.02 16 21 C -0.14 -3.18 6.94 31.78 0.22 -2.96 16 22 C 0.04 1.17 7.58 86.65 0.66 1.83 16 23 N -0.67 -22.46 6.26 -482.45 -3.02 -25.48 16 24 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.06 1.95 6.66 -2.38 -0.02 1.93 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 3.32 5.94 -2.38 -0.01 3.31 16 29 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.32 11.11 6.36 -89.70 -0.57 10.54 16 31 H 0.03 1.05 7.31 -2.39 -0.02 1.03 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.55 8.06 -2.38 -0.02 1.53 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 42 H 0.35 11.41 7.07 -89.69 -0.63 10.78 16 Total: -1.00 -62.03 321.01 1.06 -60.97 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.23 Total: 27.05 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.75 Total: -29.16 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -4.48 Total: -107.62 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -62.03 1.06 -60.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251379522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.988 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds