Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46911 * 2 1 4 4 H 1.09000 * 109.47148 * 302.43707 * 3 2 1 5 5 C 1.50703 * 109.47212 * 182.43691 * 3 2 1 6 6 H 1.08006 * 119.99634 * 240.00480 * 5 3 2 7 7 C 1.37876 * 120.00222 * 59.99809 * 5 3 2 8 8 N 1.31522 * 119.99615 * 0.02562 * 7 5 3 9 9 Si 1.86789 * 120.00378 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47514 * 120.00182 * 9 7 5 12 12 H 1.48501 * 109.47262 * 240.00311 * 9 7 5 13 13 N 1.46904 * 109.47032 * 62.43975 * 3 2 1 14 14 C 1.46899 * 111.00208 * 64.39443 * 13 3 2 15 15 C 1.46898 * 111.00155 * 188.35284 * 13 3 2 16 16 C 1.52996 * 109.47243 * 164.07320 * 15 13 3 17 17 H 1.08999 * 110.29039 * 52.87586 * 16 15 13 18 18 C 1.54265 * 110.32203 * 174.99801 * 16 15 13 19 19 C 1.54391 * 105.05846 * 118.89612 * 18 16 15 20 20 N 1.48561 * 104.59178 * 23.85275 * 19 18 16 21 21 C 1.46902 * 110.99531 * 200.95849 * 20 19 18 22 22 C 1.48561 * 104.22188 * 320.51503 * 20 19 18 23 23 H 1.09005 * 109.46720 * 174.96250 * 1 2 3 24 24 H 1.08999 * 109.47106 * 294.96327 * 1 2 3 25 25 H 1.08999 * 109.47115 * 54.96537 * 1 2 3 26 26 H 1.08996 * 109.47753 * 240.00122 * 2 1 3 27 27 H 1.09000 * 109.47149 * 119.99572 * 2 1 3 28 28 H 0.97002 * 119.99863 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47140 * 183.95047 * 14 13 3 30 30 H 1.09001 * 109.47268 * 303.95572 * 14 13 3 31 31 H 1.09002 * 109.46838 * 63.95676 * 14 13 3 32 32 H 1.09004 * 109.47287 * 44.06872 * 15 13 3 33 33 H 1.09004 * 109.47272 * 284.07611 * 15 13 3 34 34 H 1.09000 * 110.32490 * 237.79342 * 18 16 15 35 35 H 1.09007 * 110.32448 * 359.90235 * 18 16 15 36 36 H 1.08993 * 110.40805 * 142.63073 * 19 18 16 37 37 H 1.08998 * 110.40938 * 264.95496 * 19 18 16 38 38 H 1.09000 * 109.47177 * 59.87737 * 21 20 19 39 39 H 1.08998 * 109.46837 * 179.87278 * 21 20 19 40 40 H 1.09001 * 109.46987 * 299.87734 * 21 20 19 41 41 H 1.09000 * 110.41039 * 280.70450 * 22 20 19 42 42 H 1.08999 * 110.40745 * 158.26250 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6414 1.9688 -0.8673 5 6 3.5458 1.4431 -0.0604 6 1 4.1179 1.8994 0.7339 7 6 4.1931 0.8610 -1.1296 8 7 3.4963 0.3057 -2.0970 9 14 6.0594 0.8622 -1.2049 10 1 6.6029 1.5451 -0.0034 11 1 6.5543 -0.5373 -1.2444 12 1 6.5051 1.5794 -2.4264 13 7 1.5990 2.1178 1.2279 14 6 2.2022 1.4980 2.4153 15 6 1.8981 3.5550 1.1748 16 6 1.0937 4.2835 2.2532 17 1 1.2582 3.8194 3.2257 18 6 1.4858 5.7749 2.2983 19 6 0.1868 6.5412 1.9679 20 7 -0.9050 5.6042 2.3380 21 6 -2.1545 5.9535 1.6489 22 6 -0.4089 4.2743 1.8994 23 1 -0.3633 -1.0238 -0.0902 24 1 -0.3633 0.4337 0.9316 25 1 -0.3633 0.5899 -0.8415 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9516 -0.1035 -2.8495 29 1 1.8052 1.9711 3.3134 30 1 1.9652 0.4342 2.4299 31 1 3.2839 1.6289 2.3835 32 1 1.6284 3.9463 0.1938 33 1 2.9629 3.7112 1.3479 34 1 1.8410 6.0431 3.2933 35 1 2.2525 5.9875 1.5532 36 1 0.1224 7.4533 2.5610 37 1 0.1443 6.7764 0.9044 38 1 -2.0006 5.9054 0.5709 39 1 -2.9364 5.2504 1.9359 40 1 -2.4534 6.9637 1.9285 41 1 -0.5457 4.1529 0.8249 42 1 -0.9220 3.4797 2.4411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251396343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = 1.083470 kcal Electronic energy + Delta-G solvation = -18472.924832 eV Core-core repulsion = 15873.583651 eV Total energy + Delta-G solvation = -2599.341181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.96725 -36.95241 -33.39024 -31.94332 -30.91765 -28.79215 -26.77532 -26.42237 -25.01218 -23.41791 -21.74779 -20.91373 -19.37273 -18.91665 -16.44332 -15.95690 -15.19110 -15.00877 -14.38013 -14.18996 -13.74256 -13.40794 -13.14913 -12.80550 -12.61054 -12.15489 -11.79351 -11.66459 -11.35681 -11.27978 -11.24955 -11.01469 -10.89750 -10.77713 -10.68998 -10.52442 -10.41613 -10.06254 -9.84781 -9.62636 -9.34338 -9.04146 -8.37012 -8.35868 -7.08914 -5.98499 -4.11830 3.24684 3.33576 3.36613 4.22994 4.39223 4.85400 4.91992 5.12179 5.26000 5.33295 5.51503 5.53437 5.60806 5.74019 5.88116 5.91327 6.05733 6.10039 6.17018 6.23281 6.25460 6.40527 6.41683 6.47284 6.57425 6.66337 6.72044 6.76566 6.84936 7.01999 7.13640 7.16969 7.21014 7.37524 7.62867 7.77478 8.00047 8.17986 8.34680 8.49589 8.99096 9.55809 11.00518 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026975 B = 0.006606 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.742911 B = 4237.704027 C = 4743.515697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.035 0.965 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.537 5.537 14 C 0.033 3.967 15 C 0.074 3.926 16 C -0.087 4.087 17 H 0.075 0.925 18 C -0.122 4.122 19 C 0.033 3.967 20 N -0.524 5.524 21 C 0.015 3.985 22 C 0.053 3.947 23 H 0.024 0.976 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.260 0.740 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 8.009 6.572 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.053 0.947 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.260 5.260 14 C -0.116 4.116 15 C -0.055 4.055 16 C -0.106 4.106 17 H 0.093 0.907 18 C -0.160 4.160 19 C -0.095 4.095 20 N -0.248 5.248 21 C -0.134 4.134 22 C -0.075 4.075 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.093 7.867 6.992 12.691 hybrid contribution 2.127 0.013 -1.154 2.420 sum -4.966 7.880 5.838 10.992 Atomic orbital electron populations 1.21687 0.98875 0.98255 1.00499 1.21595 0.92156 0.99216 1.01941 1.19300 0.92593 0.91005 0.86415 0.94680 1.21801 0.92810 1.37144 1.06270 0.92541 1.24914 0.97895 0.95101 0.95574 1.69892 1.34844 1.37843 1.09900 0.86639 0.86352 0.77726 0.77878 1.19985 1.21002 1.21064 1.62438 1.57905 1.01273 1.04374 1.22212 0.97474 0.99398 0.92485 1.21958 0.96690 0.89846 0.96977 1.21942 0.94406 0.94148 1.00120 0.90665 1.22358 0.96667 0.95260 1.01727 1.23081 0.91479 0.96284 0.98691 1.65406 1.02685 1.03334 1.53345 1.22463 0.93227 1.01362 0.96361 1.23038 0.95041 0.90390 0.98993 0.95708 0.93490 0.94325 0.89147 0.94806 0.92996 0.94150 0.92195 0.95378 0.92045 0.94820 0.91510 0.91214 0.90816 0.94068 0.95446 0.91448 0.91884 0.93406 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.71 37.16 0.36 -2.39 16 2 C -0.11 -2.61 5.06 -26.73 -0.14 -2.74 16 3 C 0.21 5.17 1.73 -68.86 -0.12 5.05 16 4 H 0.04 0.95 7.90 -51.93 -0.41 0.54 16 5 C -0.54 -14.31 7.30 -34.44 -0.25 -14.56 16 6 H 0.06 1.51 5.89 -52.48 -0.31 1.20 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -24.83 11.30 55.43 0.63 -24.20 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 N -0.54 -11.01 3.98 -236.28 -0.94 -11.95 16 14 C 0.03 0.64 8.73 60.06 0.52 1.17 16 15 C 0.07 1.40 3.62 -3.83 -0.01 1.38 16 16 C -0.09 -1.35 3.10 -89.24 -0.28 -1.62 16 17 H 0.07 1.20 6.58 -51.93 -0.34 0.85 16 18 C -0.12 -1.63 6.65 -25.34 -0.17 -1.80 16 19 C 0.03 0.42 6.49 -2.18 -0.01 0.40 16 20 N -0.52 -7.21 5.66 -238.23 -1.35 -8.56 16 21 C 0.01 0.17 9.53 60.07 0.57 0.75 16 22 C 0.05 0.80 5.91 -2.18 -0.01 0.79 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.91 7.83 -51.93 -0.41 0.50 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 2.39 6.01 -51.93 -0.31 2.08 16 27 H 0.03 0.79 6.31 -51.93 -0.33 0.46 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.04 0.69 6.60 -51.93 -0.34 0.34 16 30 H 0.06 1.18 6.19 -51.93 -0.32 0.86 16 31 H 0.03 0.59 6.33 -51.93 -0.33 0.26 16 32 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 33 H 0.03 0.68 7.42 -51.93 -0.39 0.29 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.93 7.71 -51.93 -0.40 0.53 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.52 7.97 -51.93 -0.41 0.11 16 38 H 0.03 0.32 7.98 -51.93 -0.41 -0.09 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.79 7.51 -51.93 -0.39 0.40 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -27.07 316.14 -9.14 -36.21 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.60 Total: -0.45 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 0.37 Total: -11.85 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -1.66 Total: -44.72 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.07 -9.14 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251396343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.297 kcal (2) G-P(sol) polarization free energy of solvation -27.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds