Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46911 * 2 1 4 4 H 1.09000 * 109.47148 * 302.43707 * 3 2 1 5 5 C 1.50703 * 109.47212 * 182.43691 * 3 2 1 6 6 H 1.08006 * 119.99634 * 240.00480 * 5 3 2 7 7 C 1.37876 * 120.00222 * 59.99809 * 5 3 2 8 8 N 1.31522 * 119.99615 * 0.02562 * 7 5 3 9 9 Si 1.86789 * 120.00378 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47514 * 120.00182 * 9 7 5 12 12 H 1.48501 * 109.47262 * 240.00311 * 9 7 5 13 13 N 1.46904 * 109.47032 * 62.43975 * 3 2 1 14 14 C 1.46899 * 111.00208 * 64.39443 * 13 3 2 15 15 C 1.46898 * 111.00155 * 188.35284 * 13 3 2 16 16 C 1.52996 * 109.47243 * 164.07320 * 15 13 3 17 17 H 1.08999 * 110.29039 * 52.87586 * 16 15 13 18 18 C 1.54265 * 110.32203 * 174.99801 * 16 15 13 19 19 C 1.54391 * 105.05846 * 118.89612 * 18 16 15 20 20 N 1.48561 * 104.59178 * 23.85275 * 19 18 16 21 21 C 1.46902 * 110.99531 * 200.95849 * 20 19 18 22 22 C 1.48561 * 104.22188 * 320.51503 * 20 19 18 23 23 H 1.09005 * 109.46720 * 174.96250 * 1 2 3 24 24 H 1.08999 * 109.47106 * 294.96327 * 1 2 3 25 25 H 1.08999 * 109.47115 * 54.96537 * 1 2 3 26 26 H 1.08996 * 109.47753 * 240.00122 * 2 1 3 27 27 H 1.09000 * 109.47149 * 119.99572 * 2 1 3 28 28 H 0.97002 * 119.99863 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47140 * 183.95047 * 14 13 3 30 30 H 1.09001 * 109.47268 * 303.95572 * 14 13 3 31 31 H 1.09002 * 109.46838 * 63.95676 * 14 13 3 32 32 H 1.09004 * 109.47287 * 44.06872 * 15 13 3 33 33 H 1.09004 * 109.47272 * 284.07611 * 15 13 3 34 34 H 1.09000 * 110.32490 * 237.79342 * 18 16 15 35 35 H 1.09007 * 110.32448 * 359.90235 * 18 16 15 36 36 H 1.08993 * 110.40805 * 142.63073 * 19 18 16 37 37 H 1.08998 * 110.40938 * 264.95496 * 19 18 16 38 38 H 1.09000 * 109.47177 * 59.87737 * 21 20 19 39 39 H 1.08998 * 109.46837 * 179.87278 * 21 20 19 40 40 H 1.09001 * 109.46987 * 299.87734 * 21 20 19 41 41 H 1.09000 * 110.41039 * 280.70450 * 22 20 19 42 42 H 1.08999 * 110.40745 * 158.26250 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6414 1.9688 -0.8673 5 6 3.5458 1.4431 -0.0604 6 1 4.1179 1.8994 0.7339 7 6 4.1931 0.8610 -1.1296 8 7 3.4963 0.3057 -2.0970 9 14 6.0594 0.8622 -1.2049 10 1 6.6029 1.5451 -0.0034 11 1 6.5543 -0.5373 -1.2444 12 1 6.5051 1.5794 -2.4264 13 7 1.5990 2.1178 1.2279 14 6 2.2022 1.4980 2.4153 15 6 1.8981 3.5550 1.1748 16 6 1.0937 4.2835 2.2532 17 1 1.2582 3.8194 3.2257 18 6 1.4858 5.7749 2.2983 19 6 0.1868 6.5412 1.9679 20 7 -0.9050 5.6042 2.3380 21 6 -2.1545 5.9535 1.6489 22 6 -0.4089 4.2743 1.8994 23 1 -0.3633 -1.0238 -0.0902 24 1 -0.3633 0.4337 0.9316 25 1 -0.3633 0.5899 -0.8415 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9516 -0.1035 -2.8495 29 1 1.8052 1.9711 3.3134 30 1 1.9652 0.4342 2.4299 31 1 3.2839 1.6289 2.3835 32 1 1.6284 3.9463 0.1938 33 1 2.9629 3.7112 1.3479 34 1 1.8410 6.0431 3.2933 35 1 2.2525 5.9875 1.5532 36 1 0.1224 7.4533 2.5610 37 1 0.1443 6.7764 0.9044 38 1 -2.0006 5.9054 0.5709 39 1 -2.9364 5.2504 1.9359 40 1 -2.4534 6.9637 1.9285 41 1 -0.5457 4.1529 0.8249 42 1 -0.9220 3.4797 2.4411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251396343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = -15.929880 kcal Electronic energy + Delta-G solvation = -18473.662586 eV Core-core repulsion = 15873.583651 eV Total energy + Delta-G solvation = -2600.078935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.22616 -38.58848 -35.07058 -33.64997 -32.46985 -30.02859 -28.66753 -27.74310 -26.46762 -25.10339 -23.33273 -22.00534 -20.80362 -20.68264 -18.43419 -17.36350 -16.70603 -16.37257 -15.96436 -15.66867 -15.04644 -14.94640 -14.70092 -14.42411 -13.88140 -13.73737 -13.39918 -13.17874 -12.91811 -12.79005 -12.60396 -12.57934 -12.33794 -12.30898 -12.22007 -12.04330 -11.89486 -11.76227 -11.53004 -11.33019 -11.10584 -10.87135 -10.44376 -9.44240 -8.89240 -8.02598 -6.25755 1.34664 1.38057 1.47230 2.39333 3.13590 3.17319 3.42695 3.78658 3.94172 4.12616 4.31525 4.47504 4.53943 4.57703 4.63472 4.65714 4.71226 4.76232 4.83663 4.87083 4.92818 4.95743 4.99811 5.01485 5.09392 5.13369 5.14831 5.28996 5.32946 5.43404 5.45497 5.51538 5.64509 5.80755 5.91031 6.07578 6.11999 6.21409 6.40796 6.70092 6.96808 7.45413 8.91862 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026975 B = 0.006606 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.742911 B = 4237.704027 C = 4743.515697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.220 3.780 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.531 5.531 14 C 0.038 3.962 15 C 0.082 3.918 16 C -0.079 4.079 17 H 0.078 0.922 18 C -0.119 4.119 19 C 0.034 3.966 20 N -0.529 5.529 21 C 0.014 3.986 22 C 0.059 3.941 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.010 0.990 32 H 0.043 0.957 33 H 0.018 0.982 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.029 0.971 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 8.910 8.013 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.068 0.932 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.254 5.254 14 C -0.110 4.110 15 C -0.047 4.047 16 C -0.099 4.099 17 H 0.096 0.904 18 C -0.157 4.157 19 C -0.094 4.094 20 N -0.253 5.253 21 C -0.135 4.135 22 C -0.069 4.069 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.460 8.781 8.444 14.285 hybrid contribution 2.215 -0.236 -1.596 2.740 sum -5.245 8.545 6.848 12.142 Atomic orbital electron populations 1.21541 0.96238 0.99502 1.00753 1.21438 0.94467 0.98181 1.00321 1.19066 0.91410 0.91422 0.86864 0.98279 1.22033 0.94083 1.36717 1.06012 0.93198 1.25611 1.01873 0.95008 0.95419 1.70017 1.36311 1.38502 1.10347 0.85706 0.81595 0.77724 0.77797 1.19676 1.20609 1.20802 1.62405 1.57575 1.02047 1.03386 1.22209 0.96387 0.99500 0.92913 1.21925 0.96337 0.89033 0.97454 1.21833 0.94202 0.95268 0.98560 0.90373 1.22358 0.97178 0.93596 1.02617 1.23135 0.90553 0.96664 0.99038 1.65423 1.03609 1.02617 1.53629 1.22532 0.92382 1.02636 0.95945 1.22892 0.94704 0.91546 0.97766 0.93756 0.92352 0.95038 0.92207 0.94843 0.92992 0.91145 0.92481 0.97142 0.93859 0.96413 0.89935 0.91525 0.88710 0.94259 0.95908 0.90938 0.89965 0.95234 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.71 71.98 0.70 -4.20 16 2 C -0.11 -5.03 5.06 30.60 0.15 -4.87 16 3 C 0.22 10.91 1.73 44.17 0.08 10.98 16 4 H 0.00 -0.04 7.90 -2.39 -0.02 -0.06 16 5 C -0.55 -29.58 7.30 25.60 0.19 -29.40 16 6 H 0.05 2.71 5.89 -2.91 -0.02 2.69 16 7 C 0.02 1.13 5.30 84.65 0.45 1.58 16 8 N -0.91 -52.19 11.30 21.45 0.24 -51.94 16 9 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.53 -21.84 3.98 -901.44 -3.59 -25.43 16 14 C 0.04 1.46 8.73 127.69 1.11 2.57 16 15 C 0.08 3.08 3.62 86.30 0.31 3.39 16 16 C -0.08 -2.36 3.10 -9.90 -0.03 -2.39 16 17 H 0.08 2.31 6.58 -2.39 -0.02 2.29 16 18 C -0.12 -2.98 6.65 31.50 0.21 -2.77 16 19 C 0.03 0.78 6.49 86.45 0.56 1.34 16 20 N -0.53 -13.43 5.66 -907.61 -5.14 -18.56 16 21 C 0.01 0.29 9.53 127.69 1.22 1.51 16 22 C 0.06 1.72 5.91 86.45 0.51 2.23 16 23 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.06 2.18 7.83 -2.39 -0.02 2.16 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 3.23 6.01 -2.39 -0.01 3.22 16 27 H 0.03 1.56 6.31 -2.39 -0.02 1.54 16 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.07 2.25 6.60 -2.39 -0.02 2.23 16 30 H 0.06 2.19 6.19 -2.39 -0.01 2.18 16 31 H 0.01 0.42 6.33 -2.39 -0.02 0.41 16 32 H 0.04 1.77 7.67 -2.39 -0.02 1.75 16 33 H 0.02 0.72 7.42 -2.38 -0.02 0.70 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.71 7.71 -2.38 -0.02 1.69 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 0.92 7.97 -2.39 -0.02 0.90 16 38 H 0.02 0.50 7.98 -2.39 -0.02 0.48 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.03 0.97 7.51 -2.39 -0.02 0.95 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -57.93 316.14 -0.04 -57.97 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.96 Total: 12.38 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 5.46 Total: -20.02 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -8.48 Total: -95.93 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -57.93 -0.04 -57.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251396343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.041 kcal (2) G-P(sol) polarization free energy of solvation -57.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds