Wall clock time and date at job start Mon Mar 30 2020 03:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47417 * 2 1 4 4 H 1.08994 * 109.47196 * 305.11942 * 3 2 1 5 5 C 1.50703 * 109.47204 * 65.11942 * 3 2 1 6 6 H 1.08003 * 119.99902 * 84.29580 * 5 3 2 7 7 C 1.37876 * 119.99920 * 264.30207 * 5 3 2 8 8 N 1.31509 * 120.00164 * 352.70791 * 7 5 3 9 9 Si 1.86801 * 119.99761 * 172.71023 * 7 5 3 10 10 H 1.48496 * 109.47485 * 89.99881 * 9 7 5 11 11 H 1.48508 * 109.47004 * 209.99859 * 9 7 5 12 12 H 1.48502 * 109.47198 * 329.99714 * 9 7 5 13 13 N 1.46906 * 109.47270 * 185.11846 * 3 2 1 14 14 C 1.46904 * 110.99689 * 305.53834 * 13 3 2 15 15 C 1.46898 * 110.99591 * 69.49023 * 13 3 2 16 16 C 1.53000 * 109.46842 * 163.64067 * 15 13 3 17 17 H 1.08997 * 110.28686 * 52.87302 * 16 15 13 18 18 C 1.54257 * 110.32504 * 175.00091 * 16 15 13 19 19 C 1.54382 * 105.05966 * 118.89517 * 18 16 15 20 20 N 1.48557 * 104.59596 * 23.85743 * 19 18 16 21 21 C 1.46894 * 111.00127 * 200.95947 * 20 19 18 22 22 C 1.48564 * 104.21967 * 320.51307 * 20 19 18 23 23 H 1.08998 * 109.46839 * 57.94126 * 1 2 3 24 24 H 1.08996 * 109.47115 * 177.94052 * 1 2 3 25 25 H 1.09003 * 109.46881 * 297.94354 * 1 2 3 26 26 H 1.09003 * 109.46851 * 120.00039 * 2 1 3 27 27 H 1.08995 * 109.47184 * 239.99422 * 2 1 3 28 28 H 0.96999 * 120.00516 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46879 * 60.00386 * 14 13 3 30 30 H 1.09001 * 109.46515 * 179.97438 * 14 13 3 31 31 H 1.08990 * 109.47452 * 299.99882 * 14 13 3 32 32 H 1.08997 * 109.47174 * 283.63972 * 15 13 3 33 33 H 1.09001 * 109.47041 * 43.64481 * 15 13 3 34 34 H 1.09003 * 110.32537 * 237.79113 * 18 16 15 35 35 H 1.09004 * 110.32274 * 359.90122 * 18 16 15 36 36 H 1.09005 * 110.40593 * 142.63073 * 19 18 16 37 37 H 1.08993 * 110.41112 * 264.95607 * 19 18 16 38 38 H 1.09002 * 109.47736 * 59.86884 * 21 20 19 39 39 H 1.09004 * 109.47160 * 179.87100 * 21 20 19 40 40 H 1.09003 * 109.47288 * 299.87114 * 21 20 19 41 41 H 1.08999 * 110.41570 * 280.70813 * 22 20 19 42 42 H 1.09001 * 110.41306 * 158.25742 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6039 1.9821 -0.8405 5 6 1.6440 2.1154 1.2890 6 1 2.2565 1.9967 2.1705 7 6 0.4995 2.8824 1.3428 8 7 -0.1684 3.1453 0.2409 9 14 -0.1024 3.5480 2.9811 10 1 0.5043 4.8809 3.2269 11 1 -1.5817 3.6756 2.9503 12 1 0.2915 2.6167 4.0687 13 7 3.5039 1.4442 -0.1236 14 6 4.1213 0.6149 0.9200 15 6 3.9197 1.0028 -1.4615 16 6 5.3795 1.3956 -1.6973 17 1 6.0052 1.0318 -0.8823 18 6 5.8748 0.8328 -3.0454 19 6 6.2603 2.0727 -3.8805 20 7 6.5464 3.1275 -2.8743 21 6 6.4436 4.4659 -3.4709 22 6 5.5075 2.9283 -1.8312 23 1 -0.3633 0.5455 -0.8709 24 1 -0.3633 -1.0270 -0.0369 25 1 -0.3633 0.4816 0.9079 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 -0.9733 3.6852 0.2787 29 1 3.7640 -0.4108 0.8277 30 1 5.2051 0.6335 0.8050 31 1 3.8529 1.0062 1.9012 32 1 3.8185 -0.0800 -1.5346 33 1 3.2896 1.4783 -2.2132 34 1 6.7447 0.1940 -2.8924 35 1 5.0784 0.2751 -3.5384 36 1 7.1481 1.8671 -4.4786 37 1 5.4314 2.3716 -4.5221 38 1 5.4358 4.6145 -3.8587 39 1 6.6556 5.2192 -2.7120 40 1 7.1631 4.5573 -4.2845 41 1 4.5600 3.3624 -2.1506 42 1 5.8284 3.3669 -0.8864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251396345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:42 Heat of formation + Delta-G solvation = 2.425806 kcal Electronic energy + Delta-G solvation = -18400.503430 eV Core-core repulsion = 15801.220458 eV Total energy + Delta-G solvation = -2599.282973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.98894 -37.04908 -33.46090 -31.92174 -30.84111 -28.85687 -26.67137 -26.39265 -25.15156 -23.32873 -21.95841 -20.88195 -19.68140 -18.84288 -16.32595 -15.90490 -15.16058 -14.76847 -14.40627 -14.07429 -13.80406 -13.65135 -13.22841 -13.04580 -12.59380 -12.27632 -11.76807 -11.69785 -11.32652 -11.30283 -11.16695 -10.93400 -10.90615 -10.76349 -10.71223 -10.47852 -10.32145 -10.29075 -9.93221 -9.75883 -9.32329 -8.92080 -8.36368 -8.32308 -7.03037 -5.99730 -3.99225 3.31709 3.38807 3.41994 4.25729 4.43571 4.81481 4.90876 5.08704 5.25466 5.42167 5.49361 5.58538 5.62155 5.72378 5.88676 5.94525 6.02499 6.03296 6.10746 6.20024 6.23128 6.26165 6.35110 6.37586 6.44463 6.52793 6.60301 6.71639 6.80249 6.94035 7.04040 7.17563 7.20377 7.27314 7.56358 7.58792 7.88060 8.12368 8.44514 8.66855 9.07188 9.62334 11.09018 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.006429 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.732195 B = 4354.496345 C = 4799.059021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 C 0.201 3.799 4 H 0.070 0.930 5 C -0.493 4.493 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.530 5.530 14 C 0.031 3.969 15 C 0.062 3.938 16 C -0.085 4.085 17 H 0.076 0.924 18 C -0.121 4.121 19 C 0.032 3.968 20 N -0.524 5.524 21 C 0.015 3.985 22 C 0.052 3.948 23 H 0.049 0.951 24 H 0.014 0.986 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.020 0.980 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 -2.948 -6.229 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.095 3.905 4 H 0.087 0.913 5 C -0.531 4.531 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.528 5.528 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.252 5.252 14 C -0.117 4.117 15 C -0.067 4.067 16 C -0.104 4.104 17 H 0.094 0.906 18 C -0.160 4.160 19 C -0.096 4.096 20 N -0.248 5.248 21 C -0.134 4.134 22 C -0.075 4.075 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.785 -2.375 -6.014 11.729 hybrid contribution -1.555 -0.315 0.397 1.635 sum 8.231 -2.691 -5.617 10.322 Atomic orbital electron populations 1.21423 0.96005 0.97174 1.03164 1.22225 0.96799 1.01301 0.97586 1.19652 0.80751 0.90624 0.99514 0.91253 1.20953 1.07258 1.29609 0.95328 0.92605 1.24876 0.97096 0.95377 0.96021 1.69923 1.17959 1.38727 1.26239 0.86687 0.77831 0.79382 0.84625 1.20741 1.21340 1.19966 1.62532 1.11894 1.50807 0.99990 1.22270 0.97272 0.94749 0.97420 1.22172 0.94011 0.96896 0.93663 1.21896 0.97033 0.94931 0.96554 0.90606 1.22357 1.00676 0.96949 0.95987 1.23077 0.99492 0.92450 0.94568 1.65410 1.46542 1.02528 1.10286 1.22464 0.99853 0.91501 0.99614 1.23039 0.92946 0.96045 0.95457 0.93221 0.96648 0.91808 0.93945 0.96150 0.93063 0.96810 0.93844 0.91260 0.95905 0.91830 0.91491 0.91439 0.90816 0.94074 0.95357 0.91350 0.91916 0.93118 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.15 37.16 0.34 -2.34 16 2 C -0.14 -3.09 4.57 -26.73 -0.12 -3.21 16 3 C 0.20 4.85 1.96 -68.86 -0.14 4.72 16 4 H 0.07 1.91 6.93 -51.93 -0.36 1.55 16 5 C -0.49 -13.08 7.57 -34.44 -0.26 -13.34 16 6 H 0.06 1.50 6.34 -52.48 -0.33 1.16 16 7 C 0.07 1.84 4.28 -17.82 -0.08 1.76 16 8 N -0.89 -24.80 12.36 55.43 0.69 -24.11 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.53 -11.18 4.52 -236.28 -1.07 -12.24 16 14 C 0.03 0.60 8.66 60.07 0.52 1.12 16 15 C 0.06 1.11 3.49 -3.82 -0.01 1.10 16 16 C -0.08 -1.31 3.10 -89.24 -0.28 -1.59 16 17 H 0.08 1.20 6.54 -51.93 -0.34 0.86 16 18 C -0.12 -1.58 6.65 -25.35 -0.17 -1.74 16 19 C 0.03 0.41 6.49 -2.18 -0.01 0.40 16 20 N -0.52 -7.50 5.66 -238.23 -1.35 -8.85 16 21 C 0.01 0.18 9.53 60.06 0.57 0.75 16 22 C 0.05 0.85 5.91 -2.18 -0.01 0.83 16 23 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 1.56 6.68 -51.93 -0.35 1.21 16 26 H 0.04 0.93 6.64 -51.93 -0.35 0.59 16 27 H 0.02 0.42 6.84 -51.93 -0.36 0.06 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.01 0.26 6.33 -51.93 -0.33 -0.07 16 30 H 0.04 0.73 6.50 -51.93 -0.34 0.40 16 31 H 0.07 1.42 6.45 -51.93 -0.33 1.08 16 32 H 0.02 0.41 7.18 -51.93 -0.37 0.03 16 33 H 0.06 1.22 7.64 -51.93 -0.40 0.82 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.52 7.97 -51.93 -0.41 0.11 16 38 H 0.03 0.36 7.98 -51.93 -0.41 -0.06 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.91 7.51 -51.93 -0.39 0.52 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 315.33 15.07 4.75 4.75 Total: -1.00 -27.17 315.33 -9.21 -36.38 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.56 Total: -0.45 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 0.35 Total: -11.53 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -1.73 Total: -45.20 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.17 -9.21 -36.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251396345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.809 kcal (2) G-P(sol) polarization free energy of solvation -27.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds