Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47417 * 2 1 4 4 H 1.08994 * 109.47196 * 305.11942 * 3 2 1 5 5 C 1.50703 * 109.47204 * 65.11942 * 3 2 1 6 6 H 1.08003 * 119.99902 * 84.29580 * 5 3 2 7 7 C 1.37876 * 119.99920 * 264.30207 * 5 3 2 8 8 N 1.31509 * 120.00164 * 352.70791 * 7 5 3 9 9 Si 1.86801 * 119.99761 * 172.71023 * 7 5 3 10 10 H 1.48496 * 109.47485 * 89.99881 * 9 7 5 11 11 H 1.48508 * 109.47004 * 209.99859 * 9 7 5 12 12 H 1.48502 * 109.47198 * 329.99714 * 9 7 5 13 13 N 1.46906 * 109.47270 * 185.11846 * 3 2 1 14 14 C 1.46904 * 110.99689 * 305.53834 * 13 3 2 15 15 C 1.46898 * 110.99591 * 69.49023 * 13 3 2 16 16 C 1.53000 * 109.46842 * 163.64067 * 15 13 3 17 17 H 1.08997 * 110.28686 * 52.87302 * 16 15 13 18 18 C 1.54257 * 110.32504 * 175.00091 * 16 15 13 19 19 C 1.54382 * 105.05966 * 118.89517 * 18 16 15 20 20 N 1.48557 * 104.59596 * 23.85743 * 19 18 16 21 21 C 1.46894 * 111.00127 * 200.95947 * 20 19 18 22 22 C 1.48564 * 104.21967 * 320.51307 * 20 19 18 23 23 H 1.08998 * 109.46839 * 57.94126 * 1 2 3 24 24 H 1.08996 * 109.47115 * 177.94052 * 1 2 3 25 25 H 1.09003 * 109.46881 * 297.94354 * 1 2 3 26 26 H 1.09003 * 109.46851 * 120.00039 * 2 1 3 27 27 H 1.08995 * 109.47184 * 239.99422 * 2 1 3 28 28 H 0.96999 * 120.00516 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46879 * 60.00386 * 14 13 3 30 30 H 1.09001 * 109.46515 * 179.97438 * 14 13 3 31 31 H 1.08990 * 109.47452 * 299.99882 * 14 13 3 32 32 H 1.08997 * 109.47174 * 283.63972 * 15 13 3 33 33 H 1.09001 * 109.47041 * 43.64481 * 15 13 3 34 34 H 1.09003 * 110.32537 * 237.79113 * 18 16 15 35 35 H 1.09004 * 110.32274 * 359.90122 * 18 16 15 36 36 H 1.09005 * 110.40593 * 142.63073 * 19 18 16 37 37 H 1.08993 * 110.41112 * 264.95607 * 19 18 16 38 38 H 1.09002 * 109.47736 * 59.86884 * 21 20 19 39 39 H 1.09004 * 109.47160 * 179.87100 * 21 20 19 40 40 H 1.09003 * 109.47288 * 299.87114 * 21 20 19 41 41 H 1.08999 * 110.41570 * 280.70813 * 22 20 19 42 42 H 1.09001 * 110.41306 * 158.25742 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6039 1.9821 -0.8405 5 6 1.6440 2.1154 1.2890 6 1 2.2565 1.9967 2.1705 7 6 0.4995 2.8824 1.3428 8 7 -0.1684 3.1453 0.2409 9 14 -0.1024 3.5480 2.9811 10 1 0.5043 4.8809 3.2269 11 1 -1.5817 3.6756 2.9503 12 1 0.2915 2.6167 4.0687 13 7 3.5039 1.4442 -0.1236 14 6 4.1213 0.6149 0.9200 15 6 3.9197 1.0028 -1.4615 16 6 5.3795 1.3956 -1.6973 17 1 6.0052 1.0318 -0.8823 18 6 5.8748 0.8328 -3.0454 19 6 6.2603 2.0727 -3.8805 20 7 6.5464 3.1275 -2.8743 21 6 6.4436 4.4659 -3.4709 22 6 5.5075 2.9283 -1.8312 23 1 -0.3633 0.5455 -0.8709 24 1 -0.3633 -1.0270 -0.0369 25 1 -0.3633 0.4816 0.9079 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 -0.9733 3.6852 0.2787 29 1 3.7640 -0.4108 0.8277 30 1 5.2051 0.6335 0.8050 31 1 3.8529 1.0062 1.9012 32 1 3.8185 -0.0800 -1.5346 33 1 3.2896 1.4783 -2.2132 34 1 6.7447 0.1940 -2.8924 35 1 5.0784 0.2751 -3.5384 36 1 7.1481 1.8671 -4.4786 37 1 5.4314 2.3716 -4.5221 38 1 5.4358 4.6145 -3.8587 39 1 6.6556 5.2192 -2.7120 40 1 7.1631 4.5573 -4.2845 41 1 4.5600 3.3624 -2.1506 42 1 5.8284 3.3669 -0.8864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251396345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = -15.265734 kcal Electronic energy + Delta-G solvation = -18401.270593 eV Core-core repulsion = 15801.220458 eV Total energy + Delta-G solvation = -2600.050136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26331 -38.64858 -35.15282 -33.51508 -32.51209 -30.09976 -28.42081 -27.87508 -26.58048 -25.00351 -23.57017 -22.00972 -21.15433 -20.46329 -18.31454 -17.20975 -16.59496 -16.30010 -15.80771 -15.77222 -15.31953 -14.99908 -14.85529 -14.47448 -14.09940 -13.76287 -13.39898 -13.05567 -12.87541 -12.79977 -12.64332 -12.49596 -12.35925 -12.31172 -12.16228 -12.12089 -11.95168 -11.78541 -11.52532 -11.36673 -11.11520 -10.86366 -10.41288 -9.46809 -8.69406 -8.05634 -6.10570 1.41460 1.43852 1.52261 2.45906 3.12561 3.17760 3.51892 3.77111 3.94007 4.09687 4.29815 4.45729 4.47211 4.49983 4.53798 4.57928 4.63891 4.72110 4.78980 4.82163 4.82840 4.86126 4.92664 4.97775 5.02362 5.10444 5.12789 5.19345 5.28243 5.32129 5.42849 5.44819 5.69109 5.74280 5.80452 5.89814 6.09383 6.21571 6.69408 6.85667 7.00934 7.53858 9.02192 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.006429 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.732195 B = 4354.496345 C = 4799.059021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.131 4.131 3 C 0.207 3.793 4 H 0.030 0.970 5 C -0.503 4.503 6 H 0.050 0.950 7 C 0.026 3.974 8 N -0.917 5.917 9 Si 0.941 3.059 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.546 5.546 14 C 0.037 3.963 15 C 0.069 3.931 16 C -0.079 4.079 17 H 0.078 0.922 18 C -0.115 4.115 19 C 0.031 3.969 20 N -0.529 5.529 21 C 0.013 3.987 22 C 0.057 3.943 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.258 0.742 29 H 0.020 0.980 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.021 0.979 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.024 0.976 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.679 -4.055 -6.487 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.171 4.171 3 C 0.100 3.900 4 H 0.048 0.952 5 C -0.542 4.542 6 H 0.068 0.932 7 C -0.174 4.174 8 N -0.557 5.557 9 Si 0.768 3.232 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.269 5.269 14 C -0.111 4.111 15 C -0.060 4.060 16 C -0.098 4.098 17 H 0.097 0.903 18 C -0.154 4.154 19 C -0.096 4.096 20 N -0.253 5.253 21 C -0.135 4.135 22 C -0.071 4.071 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.039 0.961 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.042 0.958 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.236 -3.490 -6.273 13.333 hybrid contribution -1.948 0.036 0.436 1.997 sum 9.288 -3.453 -5.836 11.500 Atomic orbital electron populations 1.21313 0.96166 0.98459 1.00984 1.22086 0.96566 1.00033 0.98428 1.19378 0.82633 0.91162 0.96860 0.95204 1.21214 1.07212 1.29670 0.96079 0.93197 1.25497 0.97345 0.95880 0.98639 1.70045 1.18264 1.39527 1.27819 0.85824 0.77293 0.78670 0.81427 1.20776 1.21101 1.19340 1.62363 1.10184 1.52343 1.02026 1.22229 0.98603 0.94407 0.95846 1.22133 0.95327 0.97055 0.91442 1.21826 0.95133 0.94514 0.98376 0.90319 1.22352 1.01526 0.97278 0.94204 1.23172 1.00508 0.91667 0.94279 1.65421 1.45372 1.03814 1.10649 1.22526 1.00129 0.90649 1.00223 1.22874 0.92244 0.96418 0.95563 0.95035 0.93551 0.94266 0.93496 0.94549 0.93273 0.96182 0.91336 0.92988 0.94993 0.93685 0.89611 0.90814 0.88520 0.94283 0.96080 0.91386 0.89622 0.95803 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.94 9.15 71.98 0.66 -4.28 16 2 C -0.13 -5.74 4.57 30.59 0.14 -5.60 16 3 C 0.21 10.14 1.96 44.17 0.09 10.23 16 4 H 0.03 1.70 6.93 -2.39 -0.02 1.68 16 5 C -0.50 -27.07 7.57 25.60 0.19 -26.87 16 6 H 0.05 2.70 6.34 -2.91 -0.02 2.68 16 7 C 0.03 1.40 4.28 84.66 0.36 1.76 16 8 N -0.92 -52.37 12.36 21.45 0.27 -52.11 16 9 Si 0.94 43.66 29.54 68.60 2.03 45.68 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.55 -23.03 4.52 -901.47 -4.08 -27.11 16 14 C 0.04 1.39 8.66 127.69 1.11 2.49 16 15 C 0.07 2.45 3.49 86.30 0.30 2.75 16 16 C -0.08 -2.34 3.10 -9.90 -0.03 -2.37 16 17 H 0.08 2.31 6.54 -2.39 -0.02 2.29 16 18 C -0.12 -2.69 6.65 31.49 0.21 -2.48 16 19 C 0.03 0.72 6.49 86.45 0.56 1.29 16 20 N -0.53 -14.33 5.66 -907.62 -5.14 -19.47 16 21 C 0.01 0.32 9.53 127.69 1.22 1.53 16 22 C 0.06 1.83 5.91 86.45 0.51 2.34 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.04 1.91 6.68 -2.39 -0.02 1.89 16 26 H 0.05 2.00 6.64 -2.39 -0.02 1.98 16 27 H 0.04 1.46 6.84 -2.39 -0.02 1.44 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.02 0.71 6.33 -2.39 -0.02 0.70 16 30 H 0.07 2.18 6.50 -2.39 -0.02 2.16 16 31 H 0.05 2.10 6.45 -2.39 -0.02 2.08 16 32 H 0.03 1.08 7.18 -2.39 -0.02 1.06 16 33 H 0.04 1.75 7.64 -2.39 -0.02 1.73 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.65 7.71 -2.39 -0.02 1.63 16 36 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.04 0.92 7.97 -2.39 -0.02 0.90 16 38 H 0.02 0.52 7.98 -2.39 -0.02 0.50 16 39 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.02 0.88 7.51 -2.39 -0.02 0.86 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -58.43 315.33 -0.65 -59.08 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.96 Total: 13.14 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 5.32 Total: -19.22 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -8.95 Total: -98.68 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -58.43 -0.65 -59.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251396345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.809 kcal (2) G-P(sol) polarization free energy of solvation -58.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds