Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47111 * 2 1 4 4 H 1.09002 * 109.46687 * 301.89460 * 3 2 1 5 5 C 1.50695 * 109.47143 * 181.89626 * 3 2 1 6 6 H 1.08000 * 119.99928 * 245.62242 * 5 3 2 7 7 C 1.37870 * 120.00150 * 65.62714 * 5 3 2 8 8 N 1.31514 * 120.00267 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00330 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47258 * 59.99218 * 9 7 5 11 11 H 1.48499 * 109.47306 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46694 * 299.99732 * 9 7 5 13 13 N 1.46898 * 109.47327 * 61.89086 * 3 2 1 14 14 C 1.46850 * 110.99509 * 38.33603 * 13 3 2 15 15 H 1.08995 * 109.46748 * 294.17137 * 14 13 3 16 16 C 1.53001 * 109.45646 * 54.15038 * 14 13 3 17 17 C 1.53042 * 109.52291 * 174.15826 * 14 13 3 18 18 C 1.53126 * 109.27662 * 59.18132 * 17 14 13 19 19 C 1.53124 * 109.15948 * 302.34603 * 18 17 14 20 20 C 1.46847 * 111.00256 * 274.13043 * 13 3 2 21 21 H 1.08996 * 109.45831 * 65.82482 * 20 13 3 22 22 C 1.53003 * 109.45970 * 305.85190 * 20 13 3 23 23 N 1.46900 * 109.47117 * 81.70628 * 22 20 13 24 24 H 1.09003 * 109.47152 * 283.97179 * 1 2 3 25 25 H 1.08998 * 109.47601 * 43.97828 * 1 2 3 26 26 H 1.09005 * 109.47362 * 163.97840 * 1 2 3 27 27 H 1.08998 * 109.47367 * 239.99950 * 2 1 3 28 28 H 1.09003 * 109.47015 * 119.99341 * 2 1 3 29 29 H 0.96997 * 120.00472 * 180.02562 * 8 7 5 30 30 H 1.08991 * 109.47111 * 177.25050 * 16 14 13 31 31 H 1.08995 * 109.46720 * 297.25376 * 16 14 13 32 32 H 1.09001 * 109.46751 * 57.25104 * 16 14 13 33 33 H 1.09001 * 109.50345 * 299.24005 * 17 14 13 34 34 H 1.08993 * 109.50685 * 179.11935 * 17 14 13 35 35 H 1.08996 * 109.52069 * 182.44296 * 18 17 14 36 36 H 1.08993 * 109.57398 * 62.28076 * 18 17 14 37 37 H 1.09006 * 109.49983 * 297.71413 * 19 18 17 38 38 H 1.08995 * 109.53739 * 177.61771 * 19 18 17 39 39 H 1.09003 * 109.46881 * 201.70654 * 22 20 13 40 40 H 1.09003 * 109.46917 * 321.70332 * 22 20 13 41 41 H 1.00903 * 110.99649 * 64.79974 * 23 22 20 42 42 H 1.00901 * 110.99650 * 188.75223 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6491 1.9660 -0.8725 5 6 3.5462 1.4428 -0.0470 6 1 4.1125 1.8195 0.7919 7 6 4.2012 0.9622 -1.1609 8 7 3.5116 0.5031 -2.1823 9 14 6.0683 0.9619 -1.2190 10 1 6.5980 0.1336 -0.1060 11 1 6.5232 0.3978 -2.5152 12 1 6.5680 2.3536 -1.0815 13 7 1.5880 2.1217 1.2216 14 6 1.6361 1.2154 2.3760 15 1 0.9115 0.4129 2.2382 16 6 3.0399 0.6194 2.4979 17 6 1.2998 1.9926 3.6508 18 6 -0.0976 2.6041 3.5162 19 6 -0.1346 3.5056 2.2790 20 6 0.2433 2.6845 1.0441 21 1 -0.4746 1.8750 0.9125 22 6 0.2271 3.5861 -0.1920 23 7 0.0688 2.7615 -1.3974 24 1 -0.3633 0.2481 0.9973 25 1 -0.3634 0.7395 -0.7136 26 1 -0.3634 -0.9878 -0.2836 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.9724 0.1646 -2.9658 30 1 3.0897 -0.0152 3.3826 31 1 3.2603 0.0248 1.6113 32 1 3.7698 1.4241 2.5863 33 1 2.0320 2.7867 3.7967 34 1 1.3202 1.3164 4.5054 35 1 -0.3238 3.1945 4.4040 36 1 -0.8354 1.8090 3.4097 37 1 0.5751 4.3235 2.4034 38 1 -1.1386 3.9109 2.1533 39 1 -0.6043 4.2872 -0.1195 40 1 1.1646 4.1391 -0.2506 41 1 -0.8281 2.2993 -1.4040 42 1 0.1973 3.3133 -2.2324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251402127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = 21.896979 kcal Electronic energy + Delta-G solvation = -19740.957723 eV Core-core repulsion = 17142.519084 eV Total energy + Delta-G solvation = -2598.438639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.42106 -34.59124 -34.49948 -31.82142 -30.82721 -29.99490 -26.98291 -26.57253 -24.24261 -22.89238 -21.33714 -20.20671 -19.48774 -18.39888 -16.25735 -15.72908 -14.97991 -14.39700 -14.29326 -14.13872 -13.79790 -13.38173 -12.90094 -12.37482 -12.29512 -11.92129 -11.72211 -11.27427 -11.17564 -11.00712 -10.84499 -10.68427 -10.61504 -10.51875 -10.17426 -10.13634 -9.99602 -9.78242 -9.68133 -9.33153 -8.95070 -8.70421 -8.19255 -7.36440 -6.73838 -5.72806 -3.69007 3.44777 3.49039 3.52546 4.60758 4.94201 5.06536 5.35138 5.45708 5.46825 5.58383 5.82696 5.86548 5.97461 6.05117 6.10445 6.20484 6.30891 6.35534 6.39009 6.43331 6.45744 6.53239 6.61700 6.67901 6.70659 6.83125 6.87559 7.06846 7.20264 7.36868 7.59351 7.62225 7.70780 7.93544 7.95662 8.07867 8.13945 8.67494 8.84914 8.99961 9.38777 9.88875 11.33839 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.010291 C = 0.008843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.094823 B = 2720.075206 C = 3165.640166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C 0.180 3.820 4 H 0.120 0.880 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.891 5.891 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.281 1.281 13 N -0.515 5.515 14 C 0.086 3.914 15 H 0.033 0.967 16 C -0.145 4.145 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.112 4.112 20 C 0.073 3.927 21 H 0.048 0.952 22 C 0.071 3.929 23 N -0.822 5.822 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.021 0.979 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.253 0.747 30 H 0.023 0.977 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.015 0.985 40 H 0.082 0.918 41 H 0.327 0.673 42 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 3.664 6.106 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.184 4.184 3 C 0.074 3.926 4 H 0.137 0.863 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.531 5.531 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.207 1.207 13 N -0.241 5.241 14 C -0.022 4.022 15 H 0.051 0.949 16 C -0.202 4.202 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.037 4.037 21 H 0.066 0.934 22 C -0.060 4.060 23 N -0.352 5.352 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.100 0.900 41 H 0.141 0.859 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.276 3.585 6.275 10.256 hybrid contribution -0.242 -0.201 -0.334 0.459 sum -7.518 3.384 5.941 10.162 Atomic orbital electron populations 1.22323 1.00219 0.99462 0.99500 1.22250 0.91394 1.03122 1.01611 1.20269 0.94155 0.88959 0.89208 0.86290 1.21387 0.91703 1.38431 1.00843 0.92326 1.24866 0.96970 0.96722 0.95967 1.69945 1.34182 1.43200 1.05794 0.86855 0.87496 0.77978 0.76692 1.20767 1.21841 1.20719 1.62390 1.19781 1.36068 1.05821 1.21459 0.97037 0.93225 0.90527 0.94917 1.22247 0.96114 1.00588 1.01220 1.21695 0.96212 0.99619 0.97652 1.21516 0.97693 0.98667 0.97421 1.21632 0.99791 0.98598 0.95034 1.21832 0.93229 0.96170 0.92445 0.93431 1.21808 1.00141 0.93913 0.90093 1.58993 1.37187 1.34796 1.04221 0.94880 0.91491 0.96012 0.90215 0.94505 0.93677 0.95835 0.88640 0.92616 0.91772 0.93117 0.93002 0.93045 0.91653 0.93164 0.96731 0.89979 0.85859 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.05 37.15 0.30 -2.85 16 2 C -0.14 -3.40 4.54 -26.73 -0.12 -3.52 16 3 C 0.18 4.28 1.50 -68.87 -0.10 4.18 16 4 H 0.12 2.96 4.16 -51.93 -0.22 2.74 16 5 C -0.48 -12.99 6.33 -34.45 -0.22 -13.21 16 6 H 0.06 1.60 5.86 -52.49 -0.31 1.30 16 7 C 0.05 1.50 5.32 -17.82 -0.09 1.40 16 8 N -0.89 -25.32 11.74 55.43 0.65 -24.67 16 9 Si 0.88 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 N -0.52 -10.66 4.22 -212.25 -0.89 -11.56 16 14 C 0.09 1.68 1.73 -67.72 -0.12 1.56 16 15 H 0.03 0.67 4.91 -51.93 -0.25 0.41 16 16 C -0.14 -2.98 7.31 37.16 0.27 -2.71 16 17 C -0.11 -1.87 5.37 -26.64 -0.14 -2.01 16 18 C -0.12 -1.68 6.00 -26.60 -0.16 -1.84 16 19 C -0.11 -1.70 5.26 -26.65 -0.14 -1.84 16 20 C 0.07 1.28 1.72 -67.72 -0.12 1.16 16 21 H 0.05 0.87 4.30 -51.93 -0.22 0.64 16 22 C 0.07 1.19 5.79 -3.82 -0.02 1.17 16 23 N -0.82 -13.75 5.52 -10.37 -0.06 -13.81 16 24 H 0.03 0.63 4.71 -51.93 -0.24 0.38 16 25 H 0.07 1.28 4.31 -51.93 -0.22 1.06 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 2.14 6.49 -51.93 -0.34 1.81 16 28 H 0.04 0.87 4.51 -51.93 -0.23 0.63 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 2.24 4.18 -51.93 -0.22 2.03 16 32 H 0.05 1.19 6.97 -51.93 -0.36 0.83 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.01 0.21 7.95 -51.93 -0.41 -0.20 16 40 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 41 H 0.33 4.89 7.49 -39.29 -0.29 4.60 16 42 H 0.34 5.12 9.08 -39.29 -0.36 4.76 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -27.94 287.70 -8.27 -36.22 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -6.62 Total: 11.30 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.67 Total: -18.50 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.30 Total: -50.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.94 -8.27 -36.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251402127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.113 kcal (2) G-P(sol) polarization free energy of solvation -27.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds