Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47111 * 2 1 4 4 H 1.09002 * 109.46687 * 301.89460 * 3 2 1 5 5 C 1.50695 * 109.47143 * 181.89626 * 3 2 1 6 6 H 1.08000 * 119.99928 * 245.62242 * 5 3 2 7 7 C 1.37870 * 120.00150 * 65.62714 * 5 3 2 8 8 N 1.31514 * 120.00267 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00330 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47258 * 59.99218 * 9 7 5 11 11 H 1.48499 * 109.47306 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46694 * 299.99732 * 9 7 5 13 13 N 1.46898 * 109.47327 * 61.89086 * 3 2 1 14 14 C 1.46850 * 110.99509 * 38.33603 * 13 3 2 15 15 H 1.08995 * 109.46748 * 294.17137 * 14 13 3 16 16 C 1.53001 * 109.45646 * 54.15038 * 14 13 3 17 17 C 1.53042 * 109.52291 * 174.15826 * 14 13 3 18 18 C 1.53126 * 109.27662 * 59.18132 * 17 14 13 19 19 C 1.53124 * 109.15948 * 302.34603 * 18 17 14 20 20 C 1.46847 * 111.00256 * 274.13043 * 13 3 2 21 21 H 1.08996 * 109.45831 * 65.82482 * 20 13 3 22 22 C 1.53003 * 109.45970 * 305.85190 * 20 13 3 23 23 N 1.46900 * 109.47117 * 81.70628 * 22 20 13 24 24 H 1.09003 * 109.47152 * 283.97179 * 1 2 3 25 25 H 1.08998 * 109.47601 * 43.97828 * 1 2 3 26 26 H 1.09005 * 109.47362 * 163.97840 * 1 2 3 27 27 H 1.08998 * 109.47367 * 239.99950 * 2 1 3 28 28 H 1.09003 * 109.47015 * 119.99341 * 2 1 3 29 29 H 0.96997 * 120.00472 * 180.02562 * 8 7 5 30 30 H 1.08991 * 109.47111 * 177.25050 * 16 14 13 31 31 H 1.08995 * 109.46720 * 297.25376 * 16 14 13 32 32 H 1.09001 * 109.46751 * 57.25104 * 16 14 13 33 33 H 1.09001 * 109.50345 * 299.24005 * 17 14 13 34 34 H 1.08993 * 109.50685 * 179.11935 * 17 14 13 35 35 H 1.08996 * 109.52069 * 182.44296 * 18 17 14 36 36 H 1.08993 * 109.57398 * 62.28076 * 18 17 14 37 37 H 1.09006 * 109.49983 * 297.71413 * 19 18 17 38 38 H 1.08995 * 109.53739 * 177.61771 * 19 18 17 39 39 H 1.09003 * 109.46881 * 201.70654 * 22 20 13 40 40 H 1.09003 * 109.46917 * 321.70332 * 22 20 13 41 41 H 1.00903 * 110.99649 * 64.79974 * 23 22 20 42 42 H 1.00901 * 110.99650 * 188.75223 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6491 1.9660 -0.8725 5 6 3.5462 1.4428 -0.0470 6 1 4.1125 1.8195 0.7919 7 6 4.2012 0.9622 -1.1609 8 7 3.5116 0.5031 -2.1823 9 14 6.0683 0.9619 -1.2190 10 1 6.5980 0.1336 -0.1060 11 1 6.5232 0.3978 -2.5152 12 1 6.5680 2.3536 -1.0815 13 7 1.5880 2.1217 1.2216 14 6 1.6361 1.2154 2.3760 15 1 0.9115 0.4129 2.2382 16 6 3.0399 0.6194 2.4979 17 6 1.2998 1.9926 3.6508 18 6 -0.0976 2.6041 3.5162 19 6 -0.1346 3.5056 2.2790 20 6 0.2433 2.6845 1.0441 21 1 -0.4746 1.8750 0.9125 22 6 0.2271 3.5861 -0.1920 23 7 0.0688 2.7615 -1.3974 24 1 -0.3633 0.2481 0.9973 25 1 -0.3634 0.7395 -0.7136 26 1 -0.3634 -0.9878 -0.2836 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.9724 0.1646 -2.9658 30 1 3.0897 -0.0152 3.3826 31 1 3.2603 0.0248 1.6113 32 1 3.7698 1.4241 2.5863 33 1 2.0320 2.7867 3.7967 34 1 1.3202 1.3164 4.5054 35 1 -0.3238 3.1945 4.4040 36 1 -0.8354 1.8090 3.4097 37 1 0.5751 4.3235 2.4034 38 1 -1.1386 3.9109 2.1533 39 1 -0.6043 4.2872 -0.1195 40 1 1.1646 4.1391 -0.2506 41 1 -0.8281 2.2993 -1.4040 42 1 0.1973 3.3133 -2.2324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251402127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = 3.403480 kcal Electronic energy + Delta-G solvation = -19741.759661 eV Core-core repulsion = 17142.519084 eV Total energy + Delta-G solvation = -2599.240578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.94467 -36.17202 -35.89211 -33.76039 -32.30179 -31.56613 -28.76361 -28.16410 -25.63993 -24.72945 -22.82785 -21.64773 -21.01712 -19.99629 -18.21439 -17.21123 -16.65963 -16.09370 -15.86981 -15.58205 -15.17048 -14.68794 -14.62775 -14.02516 -13.73893 -13.49820 -13.21658 -12.92475 -12.87903 -12.67848 -12.63954 -12.36319 -12.28583 -12.10262 -11.85563 -11.80047 -11.45871 -11.30789 -11.16681 -11.08437 -10.59769 -10.54445 -10.16767 -8.86757 -8.37836 -7.82894 -5.82747 1.44859 1.45612 1.51827 2.56584 3.42870 3.54171 3.76543 4.09095 4.19132 4.24825 4.45784 4.54330 4.58583 4.63729 4.71756 4.79745 4.82881 4.93435 4.95995 4.98473 5.06127 5.12915 5.20302 5.24041 5.27650 5.35996 5.45248 5.49369 5.62759 5.68434 5.81703 5.84815 5.93330 6.10835 6.32504 6.46958 6.65381 6.76037 7.06078 7.22799 7.37435 7.78221 9.21099 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.010291 C = 0.008843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.094823 B = 2720.075206 C = 3165.640166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.183 3.817 4 H 0.113 0.887 5 C -0.487 4.487 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.914 5.914 9 Si 0.930 3.070 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.527 5.527 14 C 0.085 3.915 15 H 0.027 0.973 16 C -0.138 4.138 17 C -0.109 4.109 18 C -0.111 4.111 19 C -0.108 4.108 20 C 0.069 3.931 21 H 0.047 0.953 22 C 0.076 3.924 23 N -0.840 5.840 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.040 0.960 28 H 0.028 0.972 29 H 0.249 0.751 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.339 0.661 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 4.492 7.587 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.076 3.924 4 H 0.130 0.870 5 C -0.526 4.526 6 H 0.064 0.936 7 C -0.188 4.188 8 N -0.556 5.556 9 Si 0.758 3.242 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.252 5.252 14 C -0.024 4.024 15 H 0.045 0.955 16 C -0.196 4.196 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.040 4.040 21 H 0.065 0.935 22 C -0.054 4.054 23 N -0.372 5.372 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.154 0.846 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.891 4.423 7.770 12.609 hybrid contribution 0.265 -0.461 -0.758 0.926 sum -8.626 3.963 7.012 11.801 Atomic orbital electron populations 1.22197 0.97355 1.00271 1.00588 1.22065 0.93906 1.02405 0.99203 1.20071 0.92383 0.89255 0.90662 0.87035 1.21708 0.93765 1.37147 0.99998 0.93619 1.25423 1.00118 0.97137 0.96096 1.70063 1.35071 1.44363 1.06062 0.86068 0.83899 0.77772 0.76442 1.20697 1.21811 1.20596 1.62293 1.22222 1.35805 1.04858 1.21502 0.95774 0.93396 0.91716 0.95547 1.22110 0.96891 0.99937 1.00627 1.21641 0.97444 0.99386 0.96241 1.21511 0.96238 0.98942 0.98205 1.21620 1.01086 0.98040 0.93880 1.21977 0.91256 0.96505 0.94290 0.93510 1.21731 0.99969 0.94012 0.89731 1.58840 1.38134 1.35521 1.04706 0.93500 0.90689 0.95276 0.94144 0.95320 0.94164 0.93517 0.92052 0.94150 0.92588 0.91403 0.90388 0.92478 0.92297 0.90388 0.93531 0.92713 0.84622 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 8.05 71.98 0.58 -5.12 16 2 C -0.14 -6.48 4.54 30.59 0.14 -6.34 16 3 C 0.18 8.81 1.50 44.17 0.07 8.88 16 4 H 0.11 5.60 4.16 -2.39 -0.01 5.59 16 5 C -0.49 -26.72 6.33 25.60 0.16 -26.56 16 6 H 0.05 2.57 5.86 -2.91 -0.02 2.55 16 7 C 0.01 0.51 5.32 84.65 0.45 0.96 16 8 N -0.91 -53.28 11.74 21.44 0.25 -53.03 16 9 Si 0.93 45.54 29.54 68.60 2.03 47.56 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 11 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 N -0.53 -21.42 4.22 -825.42 -3.48 -24.90 16 14 C 0.08 3.19 1.73 44.94 0.08 3.27 16 15 H 0.03 1.04 4.91 -2.39 -0.01 1.03 16 16 C -0.14 -5.71 7.31 71.98 0.53 -5.18 16 17 C -0.11 -3.29 5.37 30.65 0.16 -3.12 16 18 C -0.11 -2.80 6.00 30.68 0.18 -2.61 16 19 C -0.11 -2.88 5.26 30.65 0.16 -2.72 16 20 C 0.07 2.27 1.72 44.94 0.08 2.34 16 21 H 0.05 1.57 4.30 -2.39 -0.01 1.56 16 22 C 0.08 2.41 5.79 86.30 0.50 2.91 16 23 N -0.84 -27.22 5.52 -186.71 -1.03 -28.25 16 24 H 0.05 1.68 4.71 -2.39 -0.01 1.67 16 25 H 0.07 2.77 4.31 -2.39 -0.01 2.76 16 26 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.04 2.23 6.49 -2.39 -0.02 2.21 16 28 H 0.03 1.37 4.51 -2.39 -0.01 1.36 16 29 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 2.95 4.18 -2.39 -0.01 2.94 16 32 H 0.04 1.74 6.97 -2.39 -0.02 1.72 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.18 7.95 -2.39 -0.02 1.16 16 40 H 0.05 2.03 8.11 -2.39 -0.02 2.01 16 41 H 0.34 9.52 7.49 -89.69 -0.67 8.85 16 42 H 0.34 10.21 9.08 -89.69 -0.81 9.39 16 Total: -1.00 -60.82 287.70 0.40 -60.42 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.45 Total: 31.49 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 3.09 Total: -33.29 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.26 Total: -106.18 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -60.82 0.40 -60.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251402127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.821 kcal (2) G-P(sol) polarization free energy of solvation -60.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds