Wall clock time and date at job start Mon Mar 30 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47354 * 2 1 4 4 H 1.08994 * 109.46715 * 302.15210 * 3 2 1 5 5 C 1.50698 * 109.47113 * 182.15350 * 3 2 1 6 6 H 1.07993 * 120.00239 * 243.00598 * 5 3 2 7 7 C 1.37882 * 119.99682 * 63.00824 * 5 3 2 8 8 N 1.31514 * 120.00349 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99622 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47386 * 60.00174 * 9 7 5 11 11 H 1.48498 * 109.46990 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46891 * 299.99807 * 9 7 5 13 13 N 1.46896 * 109.47246 * 62.15209 * 3 2 1 14 14 C 1.46841 * 111.00032 * 208.83255 * 13 3 2 15 15 H 1.08996 * 109.46417 * 54.14855 * 14 13 3 16 16 C 1.52993 * 109.45672 * 294.17010 * 14 13 3 17 17 C 1.53040 * 109.52219 * 174.16233 * 14 13 3 18 18 C 1.53118 * 109.28127 * 59.18303 * 17 14 13 19 19 C 1.53129 * 109.15873 * 302.34478 * 18 17 14 20 20 C 1.46851 * 110.99747 * 84.62016 * 13 3 2 21 21 H 1.09001 * 109.44995 * 65.83277 * 20 13 3 22 22 C 1.52998 * 109.46677 * 305.85679 * 20 13 3 23 23 N 1.46901 * 109.46629 * 78.20599 * 22 20 13 24 24 H 1.08996 * 109.47157 * 184.85235 * 1 2 3 25 25 H 1.09001 * 109.47164 * 304.85758 * 1 2 3 26 26 H 1.09001 * 109.46847 * 64.85450 * 1 2 3 27 27 H 1.08996 * 109.47544 * 239.99386 * 2 1 3 28 28 H 1.09003 * 109.46788 * 119.99571 * 2 1 3 29 29 H 0.97000 * 120.00302 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47403 * 299.95778 * 16 14 13 31 31 H 1.09003 * 109.46675 * 59.95249 * 16 14 13 32 32 H 1.08994 * 109.47379 * 179.97438 * 16 14 13 33 33 H 1.09001 * 109.50549 * 299.23848 * 17 14 13 34 34 H 1.09006 * 109.50365 * 179.12499 * 17 14 13 35 35 H 1.08992 * 109.52565 * 182.44227 * 18 17 14 36 36 H 1.08994 * 109.57875 * 62.27642 * 18 17 14 37 37 H 1.09002 * 109.49968 * 297.71350 * 19 18 17 38 38 H 1.08997 * 109.50185 * 177.59372 * 19 18 17 39 39 H 1.08998 * 109.47209 * 318.20850 * 22 20 13 40 40 H 1.08996 * 109.47071 * 198.20356 * 22 20 13 41 41 H 1.00894 * 111.00257 * 43.95559 * 23 22 20 42 42 H 1.00905 * 110.99335 * 167.90270 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6456 1.9673 -0.8700 5 6 3.5461 1.4428 -0.0534 6 1 4.1154 1.8569 0.7655 7 6 4.1972 0.9143 -1.1479 8 7 3.5039 0.4105 -2.1455 9 14 6.0640 0.9140 -1.2137 10 1 6.5997 0.1363 -0.0678 11 1 6.5143 0.2950 -2.4862 12 1 6.5621 2.3111 -1.1400 13 7 1.5934 2.1199 1.2245 14 6 1.4360 3.5625 1.0004 15 1 0.7749 3.7279 0.1498 16 6 2.8033 4.1856 0.7121 17 6 0.8331 4.2112 2.2486 18 6 1.7551 3.9592 3.4448 19 6 1.9412 2.4502 3.6268 20 6 2.5120 1.8526 2.3387 21 1 3.4809 2.3047 2.1268 22 6 2.6809 0.3415 2.5090 23 7 3.6065 -0.1658 1.4873 24 1 -0.3633 -1.0239 0.0869 25 1 -0.3633 0.5874 0.8433 26 1 -0.3633 0.4367 -0.9303 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9620 0.0384 -2.9153 30 1 3.4645 4.0205 1.5628 31 1 3.2329 3.7236 -0.1768 32 1 2.6868 5.2563 0.5453 33 1 -0.1470 3.7774 2.4468 34 1 0.7309 5.2844 2.0876 35 1 1.3083 4.3822 4.3445 36 1 2.7232 4.4265 3.2646 37 1 0.9785 1.9888 3.8467 38 1 2.6307 2.2654 4.4505 39 1 1.7130 -0.1472 2.3972 40 1 3.0823 0.1302 3.5001 41 1 4.4090 0.4386 1.3942 42 1 3.8889 -1.1124 1.6934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251402129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:43 Heat of formation + Delta-G solvation = 38.453706 kcal Electronic energy + Delta-G solvation = -20010.039047 eV Core-core repulsion = 17412.318361 eV Total energy + Delta-G solvation = -2597.720686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09612 -36.86646 -34.89489 -33.51085 -32.36953 -31.56453 -28.57061 -27.93619 -25.47650 -24.88447 -23.25256 -22.05479 -20.99867 -19.46962 -17.88906 -17.17260 -16.43156 -16.00453 -15.52160 -15.37510 -15.36402 -14.69341 -14.24605 -14.07428 -13.71370 -13.54326 -13.25170 -13.07484 -12.86702 -12.75211 -12.62808 -12.47114 -12.33230 -12.14746 -11.93257 -11.54639 -11.38373 -11.09986 -10.95586 -10.83545 -10.63254 -10.30789 -9.96944 -8.63060 -8.56453 -7.69231 -5.55055 1.45019 1.48633 1.51702 2.61707 3.51897 3.53101 4.01790 4.09023 4.16997 4.36326 4.50850 4.65307 4.68544 4.75222 4.78819 4.84862 4.87556 4.93584 4.98620 5.08732 5.17127 5.19370 5.23305 5.26746 5.32508 5.37652 5.45112 5.51797 5.61676 5.65959 5.81615 5.89488 6.03857 6.30735 6.47833 6.52148 6.71280 6.86417 7.00455 7.17275 7.29550 7.82917 9.33667 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.011263 C = 0.010302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.311271 B = 2485.327249 C = 2717.202553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C 0.235 3.765 4 H -0.026 1.026 5 C -0.429 4.429 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.929 5.929 9 Si 0.916 3.084 10 H -0.268 1.268 11 H -0.308 1.308 12 H -0.287 1.287 13 N -0.520 5.520 14 C 0.081 3.919 15 H 0.048 0.952 16 C -0.172 4.172 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.108 4.108 20 C 0.088 3.912 21 H 0.034 0.966 22 C 0.070 3.930 23 N -0.803 5.803 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.012 0.988 27 H 0.035 0.965 28 H 0.101 0.899 29 H 0.244 0.756 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.341 0.659 42 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.417 4.368 11.861 12.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C 0.129 3.871 4 H -0.008 1.008 5 C -0.470 4.470 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.573 5.573 9 Si 0.746 3.254 10 H -0.193 1.193 11 H -0.235 1.235 12 H -0.214 1.214 13 N -0.244 5.244 14 C -0.028 4.028 15 H 0.066 0.934 16 C -0.231 4.231 17 C -0.139 4.139 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.021 4.021 21 H 0.051 0.949 22 C -0.060 4.060 23 N -0.340 5.340 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.161 0.839 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.425 4.199 11.346 12.574 hybrid contribution 2.620 0.008 -0.483 2.664 sum -0.804 4.207 10.864 11.678 Atomic orbital electron populations 1.21751 0.99600 0.98746 0.99234 1.21963 0.90852 0.98880 1.03082 1.18854 0.92204 0.91223 0.84865 1.00761 1.21418 0.92737 1.32144 1.00677 0.92158 1.25123 0.98662 0.97616 0.96623 1.70030 1.34907 1.43873 1.08506 0.86301 0.85270 0.77213 0.76639 1.19290 1.23481 1.21388 1.62526 1.47510 1.07737 1.06669 1.21588 0.95163 0.88799 0.97278 0.93353 1.22446 0.99029 0.99778 1.01814 1.21537 0.98925 0.99647 0.93819 1.21538 0.99530 0.95851 0.98148 1.21635 1.01288 0.95842 0.95880 1.21595 0.94549 0.94649 0.91278 0.94868 1.21833 0.97716 0.94915 0.91574 1.60962 1.21519 1.04653 1.46824 0.94765 0.92655 0.96923 0.94592 0.88139 0.94662 0.92788 0.93477 0.92945 0.91780 0.91081 0.90422 0.92630 0.91614 0.91212 0.91567 0.95802 0.83856 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 9.84 71.98 0.71 -5.00 16 2 C -0.11 -5.14 4.49 30.60 0.14 -5.00 16 3 C 0.24 11.18 1.34 44.17 0.06 11.24 16 4 H -0.03 -1.45 7.65 -2.39 -0.02 -1.47 16 5 C -0.43 -20.77 2.25 25.60 0.06 -20.71 16 6 H 0.06 2.83 3.66 -2.91 -0.01 2.82 16 7 C 0.02 0.80 5.12 84.66 0.43 1.23 16 8 N -0.93 -53.75 11.53 21.45 0.25 -53.51 16 9 Si 0.92 42.39 29.06 68.60 1.99 44.38 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.31 -14.99 7.11 99.48 0.71 -14.29 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.52 -20.20 3.63 -825.47 -3.00 -23.20 16 14 C 0.08 2.90 2.84 44.94 0.13 3.03 16 15 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 16 C -0.17 -6.28 7.57 71.98 0.54 -5.73 16 17 C -0.10 -2.79 5.61 30.65 0.17 -2.62 16 18 C -0.11 -2.79 5.69 30.68 0.17 -2.62 16 19 C -0.11 -2.92 5.29 30.65 0.16 -2.75 16 20 C 0.09 3.03 1.53 44.94 0.07 3.10 16 21 H 0.03 1.28 3.96 -2.39 -0.01 1.27 16 22 C 0.07 2.38 5.42 86.30 0.47 2.85 16 23 N -0.80 -30.90 4.44 -186.72 -0.83 -31.73 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 2.19 7.53 -2.39 -0.02 2.18 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.04 1.98 6.26 -2.39 -0.01 1.96 16 28 H 0.10 4.45 3.09 -2.39 -0.01 4.44 16 29 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.05 1.89 4.80 -2.39 -0.01 1.88 16 31 H 0.05 2.09 5.94 -2.39 -0.01 2.07 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.41 6.56 -2.39 -0.02 1.40 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 2.39 6.40 -2.39 -0.02 2.38 16 40 H 0.02 0.71 8.01 -2.39 -0.02 0.69 16 41 H 0.34 13.81 5.36 -89.70 -0.48 13.33 16 42 H 0.30 10.49 9.08 -89.69 -0.81 9.68 16 Total: -1.00 -56.53 286.62 1.26 -55.27 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.27 Total: 31.78 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 3.11 Total: -22.99 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -3.58 Total: -108.44 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.99 Total: 44.38 kcal Total: -56.53 1.26 -55.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251402129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.725 kcal (2) G-P(sol) polarization free energy of solvation -56.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds