Wall clock time and date at job start Mon Mar 30 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46921 * 2 1 4 4 H 1.09002 * 109.47356 * 55.00370 * 3 2 1 5 5 C 1.52999 * 109.47132 * 175.00204 * 3 2 1 6 6 N 1.46899 * 109.47272 * 294.99942 * 3 2 1 7 7 C 1.46956 * 110.99902 * 298.80220 * 6 3 2 8 8 C 1.53055 * 109.36416 * 176.81045 * 7 6 3 9 9 C 1.53008 * 109.48891 * 298.43579 * 8 7 6 10 10 C 1.52992 * 109.48994 * 178.36673 * 8 7 6 11 11 N 1.46963 * 109.36395 * 58.39725 * 8 7 6 12 12 C 1.46956 * 110.88015 * 300.68105 * 11 8 7 13 13 C 1.46950 * 111.00175 * 175.00022 * 6 3 2 14 14 H 1.09003 * 109.48721 * 63.22201 * 13 6 3 15 15 C 1.50708 * 109.50901 * 303.16881 * 13 6 3 16 16 H 1.07999 * 119.99374 * 0.09507 * 15 13 6 17 17 C 1.37877 * 119.99754 * 180.09662 * 15 13 6 18 18 N 1.31510 * 120.00312 * 359.97438 * 17 15 13 19 19 Si 1.86809 * 119.99402 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46876 * 60.00165 * 19 17 15 21 21 H 1.48501 * 109.46867 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47145 * 300.00208 * 19 17 15 23 23 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47533 * 299.99749 * 1 2 3 25 25 H 1.09002 * 109.47382 * 59.99753 * 1 2 3 26 26 H 1.08994 * 109.46794 * 240.00014 * 2 1 3 27 27 H 1.08997 * 109.46804 * 119.99845 * 2 1 3 28 28 H 1.09001 * 109.47197 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.46978 * 300.00016 * 5 3 2 30 30 H 1.09002 * 109.47340 * 59.99628 * 5 3 2 31 31 H 1.08994 * 109.48748 * 296.77590 * 7 6 3 32 32 H 1.09003 * 109.49140 * 56.82583 * 7 6 3 33 33 H 1.08997 * 109.47381 * 179.89242 * 9 8 7 34 34 H 1.09006 * 109.46796 * 299.88940 * 9 8 7 35 35 H 1.08994 * 109.47061 * 59.88825 * 9 8 7 36 36 H 1.08997 * 109.47437 * 300.11000 * 10 8 7 37 37 H 1.09006 * 109.46864 * 60.11364 * 10 8 7 38 38 H 1.09001 * 109.47185 * 180.10905 * 10 8 7 39 39 H 1.00894 * 110.99842 * 176.81230 * 11 8 7 40 40 H 1.09000 * 109.48237 * 179.28706 * 12 11 8 41 41 H 1.08994 * 109.48936 * 299.35244 * 12 11 8 42 42 H 0.97005 * 119.99848 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6513 2.0993 -1.2552 7 6 2.2438 1.4151 -2.4130 8 6 1.7522 2.0793 -3.7013 9 6 0.2306 1.9481 -3.7947 10 6 2.3991 1.3953 -4.9072 11 7 2.1217 3.5017 -3.6878 12 6 1.5292 4.1858 -2.5300 13 6 2.0208 3.5215 -1.2418 14 1 3.1048 3.6150 -1.1752 15 6 1.3841 4.1958 -0.0538 16 1 0.7677 3.6248 0.6248 17 6 1.5885 5.5414 0.1665 18 7 2.3395 6.2364 -0.6596 19 14 0.7986 6.3772 1.6387 20 1 1.2753 5.7324 2.8886 21 1 1.1712 7.8146 1.6505 22 1 -0.6779 6.2487 1.5475 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9280 2.4721 0.1261 29 1 3.8532 0.9570 1.0571 30 1 3.9994 0.9053 -0.7161 31 1 3.3302 1.4846 -2.3597 32 1 1.9458 0.3666 -2.4075 33 1 -0.1194 2.4229 -4.7113 34 1 -0.0431 0.8931 -3.8047 35 1 -0.2295 2.4348 -2.9348 36 1 3.4830 1.4882 -4.8396 37 1 2.1247 0.3403 -4.9169 38 1 2.0503 1.8698 -5.8244 39 1 1.8548 3.9527 -4.5499 40 1 1.8275 5.2342 -2.5354 41 1 0.4428 4.1162 -2.5833 42 1 2.4829 7.1832 -0.5047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251531676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:55 Heat of formation + Delta-G solvation = 0.203556 kcal Electronic energy + Delta-G solvation = -19403.595619 eV Core-core repulsion = 16804.216282 eV Total energy + Delta-G solvation = -2599.379337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.17754 -35.99628 -33.57285 -31.51245 -30.83952 -28.75839 -27.24084 -26.73494 -24.46186 -23.88766 -22.92697 -20.53867 -19.26660 -17.67629 -16.16342 -15.57531 -14.73360 -14.48221 -14.12454 -13.86335 -13.63443 -13.27181 -12.96245 -12.75511 -12.54325 -12.26293 -11.79981 -11.71834 -11.49627 -11.31857 -11.02705 -10.94711 -10.77253 -10.71461 -10.54233 -10.31122 -10.21021 -10.15579 -9.97357 -9.77187 -9.27450 -8.81636 -8.44716 -7.48519 -6.96159 -6.00658 -4.04968 3.31891 3.36739 3.39395 4.40922 4.98026 5.01205 5.32714 5.41707 5.44508 5.65493 5.70849 5.77431 5.87575 5.99343 6.07029 6.11693 6.12921 6.21053 6.26476 6.33669 6.38696 6.48029 6.49809 6.52894 6.54180 6.66132 6.73929 6.82332 6.89897 7.01013 7.07572 7.17656 7.49569 7.71282 7.81712 8.01864 8.22661 8.28306 8.44850 8.69827 9.03534 9.60114 11.05706 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.010509 C = 0.008217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.623870 B = 2663.855958 C = 3406.905816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.087 3.913 4 H 0.092 0.908 5 C -0.180 4.180 6 N -0.523 5.523 7 C 0.067 3.933 8 C 0.109 3.891 9 C -0.167 4.167 10 C -0.135 4.135 11 N -0.686 5.686 12 C 0.066 3.934 13 C 0.223 3.777 14 H 0.010 0.990 15 C -0.504 4.504 16 H 0.062 0.938 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.035 0.965 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.321 0.679 40 H 0.103 0.897 41 H 0.016 0.984 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 -9.287 -3.601 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.022 4.022 4 H 0.110 0.890 5 C -0.238 4.238 6 N -0.247 5.247 7 C -0.062 4.062 8 C 0.018 3.982 9 C -0.226 4.226 10 C -0.194 4.194 11 N -0.316 5.316 12 C -0.063 4.063 13 C 0.117 3.883 14 H 0.028 0.972 15 C -0.543 4.543 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.721 3.279 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.034 0.966 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.071 -9.215 -3.346 9.862 hybrid contribution -0.436 0.669 0.533 0.960 sum -1.507 -8.547 -2.813 9.123 Atomic orbital electron populations 1.21616 0.95765 0.99478 1.02781 1.21641 0.96435 0.96959 1.00390 1.21601 0.92412 0.93319 0.94838 0.88999 1.22392 0.98957 1.02475 1.00013 1.62388 1.57844 1.04630 0.99858 1.22071 0.96678 0.96743 0.90711 1.20907 0.92731 0.90211 0.94387 1.22387 0.97693 1.01031 1.01498 1.21794 1.01067 0.99343 0.97168 1.60940 1.63306 1.01178 1.06131 1.22318 0.95038 1.00323 0.88597 1.19209 0.94796 0.81455 0.92858 0.97202 1.21105 1.30409 0.93722 1.09102 0.91951 1.24934 0.95202 0.97416 0.96492 1.69874 1.38265 1.08094 1.36643 0.86638 0.79775 0.78324 0.83123 1.20376 1.21420 1.20321 0.94619 0.93288 0.91463 0.92770 0.93036 0.91513 0.93743 0.93730 0.95214 0.92140 0.94473 0.93540 0.90422 0.92401 0.92989 0.93241 0.86271 0.87866 0.96616 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.80 37.16 0.36 -1.77 16 2 C -0.12 -1.84 5.23 -26.73 -0.14 -1.98 16 3 C 0.09 1.67 2.10 -67.71 -0.14 1.53 16 4 H 0.09 1.97 6.12 -51.93 -0.32 1.65 16 5 C -0.18 -3.34 8.49 37.16 0.32 -3.02 16 6 N -0.52 -10.80 3.28 -219.94 -0.72 -11.52 16 7 C 0.07 1.24 3.53 -3.77 -0.01 1.23 16 8 C 0.11 1.92 0.94 -131.54 -0.12 1.80 16 9 C -0.17 -2.82 8.11 37.16 0.30 -2.52 16 10 C -0.14 -1.97 8.75 37.15 0.32 -1.64 16 11 N -0.69 -13.78 6.34 -99.83 -0.63 -14.41 16 12 C 0.07 1.55 5.37 -3.77 -0.02 1.53 16 13 C 0.22 5.47 1.58 -68.81 -0.11 5.36 16 14 H 0.01 0.29 6.60 -51.93 -0.34 -0.05 16 15 C -0.50 -13.35 7.87 -34.44 -0.27 -13.62 16 16 H 0.06 1.66 6.47 -52.49 -0.34 1.32 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.87 11.34 55.43 0.63 -24.24 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16 26 H 0.05 0.83 6.11 -51.93 -0.32 0.51 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.44 6.59 -51.93 -0.34 1.09 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.78 6.46 -51.93 -0.34 0.45 16 31 H 0.03 0.60 6.46 -51.93 -0.34 0.26 16 32 H 0.06 1.03 6.07 -51.93 -0.32 0.71 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.53 5.94 -51.93 -0.31 1.22 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.32 5.87 8.81 -39.30 -0.35 5.52 16 40 H 0.10 2.74 6.12 -51.93 -0.32 2.42 16 41 H 0.02 0.38 6.35 -51.93 -0.33 0.05 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -26.72 306.33 -8.03 -34.75 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.29 Total: 6.33 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 0.39 Total: -11.56 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.73 Total: -50.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.72 -8.03 -34.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251531676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.952 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds