Wall clock time and date at job start Mon Mar 30 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46921 * 2 1 4 4 H 1.09002 * 109.47356 * 55.00370 * 3 2 1 5 5 C 1.52999 * 109.47132 * 175.00204 * 3 2 1 6 6 N 1.46899 * 109.47272 * 294.99942 * 3 2 1 7 7 C 1.46956 * 110.99902 * 298.80220 * 6 3 2 8 8 C 1.53055 * 109.36416 * 176.81045 * 7 6 3 9 9 C 1.53008 * 109.48891 * 298.43579 * 8 7 6 10 10 C 1.52992 * 109.48994 * 178.36673 * 8 7 6 11 11 N 1.46963 * 109.36395 * 58.39725 * 8 7 6 12 12 C 1.46956 * 110.88015 * 300.68105 * 11 8 7 13 13 C 1.46950 * 111.00175 * 175.00022 * 6 3 2 14 14 H 1.09003 * 109.48721 * 63.22201 * 13 6 3 15 15 C 1.50708 * 109.50901 * 303.16881 * 13 6 3 16 16 H 1.07999 * 119.99374 * 0.09507 * 15 13 6 17 17 C 1.37877 * 119.99754 * 180.09662 * 15 13 6 18 18 N 1.31510 * 120.00312 * 359.97438 * 17 15 13 19 19 Si 1.86809 * 119.99402 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46876 * 60.00165 * 19 17 15 21 21 H 1.48501 * 109.46867 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47145 * 300.00208 * 19 17 15 23 23 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47533 * 299.99749 * 1 2 3 25 25 H 1.09002 * 109.47382 * 59.99753 * 1 2 3 26 26 H 1.08994 * 109.46794 * 240.00014 * 2 1 3 27 27 H 1.08997 * 109.46804 * 119.99845 * 2 1 3 28 28 H 1.09001 * 109.47197 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.46978 * 300.00016 * 5 3 2 30 30 H 1.09002 * 109.47340 * 59.99628 * 5 3 2 31 31 H 1.08994 * 109.48748 * 296.77590 * 7 6 3 32 32 H 1.09003 * 109.49140 * 56.82583 * 7 6 3 33 33 H 1.08997 * 109.47381 * 179.89242 * 9 8 7 34 34 H 1.09006 * 109.46796 * 299.88940 * 9 8 7 35 35 H 1.08994 * 109.47061 * 59.88825 * 9 8 7 36 36 H 1.08997 * 109.47437 * 300.11000 * 10 8 7 37 37 H 1.09006 * 109.46864 * 60.11364 * 10 8 7 38 38 H 1.09001 * 109.47185 * 180.10905 * 10 8 7 39 39 H 1.00894 * 110.99842 * 176.81230 * 11 8 7 40 40 H 1.09000 * 109.48237 * 179.28706 * 12 11 8 41 41 H 1.08994 * 109.48936 * 299.35244 * 12 11 8 42 42 H 0.97005 * 119.99848 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6513 2.0993 -1.2552 7 6 2.2438 1.4151 -2.4130 8 6 1.7522 2.0793 -3.7013 9 6 0.2306 1.9481 -3.7947 10 6 2.3991 1.3953 -4.9072 11 7 2.1217 3.5017 -3.6878 12 6 1.5292 4.1858 -2.5300 13 6 2.0208 3.5215 -1.2418 14 1 3.1048 3.6150 -1.1752 15 6 1.3841 4.1958 -0.0538 16 1 0.7677 3.6248 0.6248 17 6 1.5885 5.5414 0.1665 18 7 2.3395 6.2364 -0.6596 19 14 0.7986 6.3772 1.6387 20 1 1.2753 5.7324 2.8886 21 1 1.1712 7.8146 1.6505 22 1 -0.6779 6.2487 1.5475 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9280 2.4721 0.1261 29 1 3.8532 0.9570 1.0571 30 1 3.9994 0.9053 -0.7161 31 1 3.3302 1.4846 -2.3597 32 1 1.9458 0.3666 -2.4075 33 1 -0.1194 2.4229 -4.7113 34 1 -0.0431 0.8931 -3.8047 35 1 -0.2295 2.4348 -2.9348 36 1 3.4830 1.4882 -4.8396 37 1 2.1247 0.3403 -4.9169 38 1 2.0503 1.8698 -5.8244 39 1 1.8548 3.9527 -4.5499 40 1 1.8275 5.2342 -2.5354 41 1 0.4428 4.1162 -2.5833 42 1 2.4829 7.1832 -0.5047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251531676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:55 Heat of formation + Delta-G solvation = -17.173350 kcal Electronic energy + Delta-G solvation = -19404.349138 eV Core-core repulsion = 16804.216282 eV Total energy + Delta-G solvation = -2600.132856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78512 -37.48819 -35.45362 -33.18564 -32.44386 -30.26395 -29.01008 -28.03631 -26.04886 -25.77845 -24.34621 -22.23215 -20.77132 -19.39023 -18.12863 -17.24902 -16.36871 -16.17941 -15.71629 -15.48290 -15.22581 -14.71180 -14.47806 -14.28008 -14.09574 -13.86695 -13.38533 -13.06084 -12.93546 -12.80196 -12.69136 -12.59716 -12.45985 -12.28236 -12.07294 -11.90439 -11.80105 -11.62923 -11.55573 -11.49469 -10.89823 -10.69282 -10.49670 -9.13843 -8.68770 -8.08485 -6.19455 1.41507 1.42306 1.49854 2.42490 3.16838 3.41658 3.54282 4.02568 4.04597 4.31238 4.32935 4.37568 4.50725 4.59870 4.68224 4.76378 4.81161 4.86413 4.88116 4.92596 4.94798 5.01706 5.05948 5.13063 5.18121 5.21712 5.27073 5.30099 5.32411 5.52156 5.59996 5.64139 5.68396 5.76435 5.80144 6.23208 6.39262 6.51129 6.78859 6.90220 6.98898 7.49587 8.96658 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.010509 C = 0.008217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.623870 B = 2663.855958 C = 3406.905816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.082 3.918 4 H 0.063 0.937 5 C -0.170 4.170 6 N -0.522 5.522 7 C 0.067 3.933 8 C 0.103 3.897 9 C -0.157 4.157 10 C -0.127 4.127 11 N -0.692 5.692 12 C 0.082 3.918 13 C 0.235 3.765 14 H -0.035 1.035 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.014 0.986 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.333 0.667 40 H 0.069 0.931 41 H 0.004 0.996 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -11.572 -4.054 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C -0.027 4.027 4 H 0.081 0.919 5 C -0.229 4.229 6 N -0.245 5.245 7 C -0.062 4.062 8 C 0.012 3.988 9 C -0.216 4.216 10 C -0.185 4.185 11 N -0.323 5.323 12 C -0.047 4.047 13 C 0.127 3.873 14 H -0.017 1.017 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.198 1.198 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.150 0.850 40 H 0.087 0.913 41 H 0.022 0.978 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.792 -11.524 -3.808 12.268 hybrid contribution -0.186 1.334 0.664 1.502 sum -1.978 -10.189 -3.144 10.845 Atomic orbital electron populations 1.21567 0.95325 1.00883 1.01446 1.21570 0.96697 0.94166 1.01988 1.21665 0.92603 0.95253 0.93172 0.91900 1.22279 0.98631 1.00239 1.01706 1.62353 1.57890 1.02865 1.01439 1.22190 0.95665 0.97977 0.90330 1.21119 0.93757 0.88497 0.95449 1.22256 0.96552 1.02189 1.00642 1.21724 1.00381 1.00532 0.95867 1.60840 1.63236 1.02784 1.05421 1.21874 0.94124 0.98807 0.89934 1.18882 0.91721 0.84032 0.92676 1.01719 1.21361 1.30139 0.94080 1.09802 0.92531 1.25659 0.95741 0.98090 0.98939 1.70022 1.39407 1.08119 1.38085 0.85693 0.78996 0.77277 0.80139 1.19893 1.21138 1.19792 0.91766 0.94259 0.93228 0.91503 0.90971 0.95616 0.91428 0.92641 0.96779 0.89478 0.93177 0.91338 0.93692 0.92982 0.90472 0.91811 0.85020 0.91268 0.97762 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.80 71.98 0.71 -3.12 16 2 C -0.11 -3.09 5.23 30.59 0.16 -2.93 16 3 C 0.08 3.12 2.10 44.91 0.09 3.21 16 4 H 0.06 2.75 6.12 -2.39 -0.01 2.74 16 5 C -0.17 -6.31 8.49 71.98 0.61 -5.70 16 6 N -0.52 -21.68 3.28 -849.77 -2.78 -24.46 16 7 C 0.07 2.39 3.53 86.31 0.30 2.70 16 8 C 0.10 3.45 0.94 3.53 0.00 3.45 16 9 C -0.16 -4.99 8.11 71.98 0.58 -4.40 16 10 C -0.13 -3.28 8.75 71.98 0.63 -2.65 16 11 N -0.69 -27.92 6.34 -469.74 -2.98 -30.90 16 12 C 0.08 4.03 5.37 86.31 0.46 4.50 16 13 C 0.23 11.96 1.58 44.18 0.07 12.03 16 14 H -0.03 -2.05 6.60 -2.39 -0.02 -2.07 16 15 C -0.51 -28.32 7.87 25.60 0.20 -28.12 16 16 H 0.06 3.11 6.47 -2.91 -0.02 3.09 16 17 C 0.01 0.81 5.30 84.66 0.45 1.26 16 18 N -0.92 -53.29 11.34 21.45 0.24 -53.04 16 19 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.58 7.75 -2.39 -0.02 1.56 16 26 H 0.07 1.79 6.11 -2.39 -0.01 1.77 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.02 1.14 6.59 -2.39 -0.02 1.12 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.91 6.46 -2.39 -0.02 1.89 16 31 H 0.01 0.55 6.46 -2.39 -0.02 0.54 16 32 H 0.09 2.67 6.07 -2.39 -0.01 2.65 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.04 1.73 5.94 -2.39 -0.01 1.71 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.33 12.03 8.81 -89.70 -0.79 11.24 16 40 H 0.07 3.86 6.12 -2.39 -0.01 3.85 16 41 H 0.00 0.21 6.35 -2.39 -0.02 0.20 16 42 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 Total: -1.00 -60.38 306.33 0.98 -59.39 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.20 Total: 22.62 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.28 Total: -19.77 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -5.52 Total: -108.41 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.38 0.98 -59.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251531676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.221 kcal (2) G-P(sol) polarization free energy of solvation -60.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds